Summary of Study ST001478

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001002. The data can be accessed directly via it's Project DOI: 10.21228/M85T2G This work is supported by NIH grant, U2C- DK119886.

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Study IDST001478
Study TitleNMR spectroscopy analysis reveals altered metabolic homeostasis in Arabidopsis seedlings treated with a cytokinesis inhibitor
Study SummaryIn plant cytokinesis, de novo formation of a cell plate that evolves into the new cell wall, partitions the cytoplasm of the dividing cell. Cell plate formation involves highly orchestrated vesicle accumulation, fusion, and membrane network maturation supported by the temporary integration of elastic and pliable callose. The small molecule, Endosidin 7 (ES7), arrests late cytokinesis in Arabidopsis by inhibiting callose deposition at the cell plate. Its effect is specific, as it does not broadly affect endomembrane trafficking or cytoskeletal organization. It has emerged as a very valuable tool for dissecting this essential plant process. In order to gain deeper insights regarding its mode of action and the effects of cytokinesis inhibition on overall plant growth, we investigated the effect of ES7 through a nuclear magnetic resonance (NMR) spectroscopy metabolomics approach. In this case study, profiles of Arabidopsis leaf and root tissues were analyzed at different growth stages and ES7 exposure levels. The results show tissue-specific changes in the plant metabolic profile across a developmental gradient, and the effect that ES7 treatment has on the corresponding metabolome. The ES7 induced profile suggests metabolic compensations in central metabolism pathways in response to cytokinesis inhibition. Further, this study shows that long-term treatment of ES7 disrupts the homeostasis of primary metabolism in Arabidopsis seedlings, likely via alteration of hormonal regulation.
Institute
California State University Fresno
Last NameKrishnan
First NameKrish
AddressDepartment of Chemistry
Emailkrish@csufresno.edu
Phone559-278-7944
Submit Date2020-06-25
Raw Data AvailableYes
Raw Data File Type(s)fid
Analysis Type DetailNMR
Release Date2021-06-28
Release Version1
Krish Krishnan Krish Krishnan
https://dx.doi.org/10.21228/M85T2G
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR001002
Project DOI:doi: 10.21228/M85T2G
Project Title:NMR spectroscopy analysis reveals an altered metabolic homeostasis in Arabidopsis seedlings treated with a cytokinesis inhibitor
Project Type:NMR metabolimics
Project Summary:In plant cytokinesis, de novo formation of a cell plate that evolves into the new cell wall, partitions the cytoplasm of the dividing cell. Cell plate formation involves highly orchestrated vesicle accumulation, fusion, and membrane network maturation supported by the temporary integration of elastic and pliable callose. The small molecule, Endosidin 7 (ES7), arrests late cytokinesis in Arabidopsis by inhibiting callose deposition at the cell plate. Its effect is specific, as it does not broadly affect endomembrane trafficking or cytoskeletal organization. It has emerged as a very valuable tool for dissecting this essential plant process. In order to gain deeper insights regarding its mode of action and the effects of cytokinesis inhibition on overall plant growth, we investigated the effect of ES7 through a nuclear magnetic resonance (NMR) spectroscopy metabolomics approach. In this case study, profiles of Arabidopsis leaf and root tissues were analyzed at different growth stages and ES7 exposure levels. The results show tissue-specific changes in the plant metabolic profile across a developmental gradient, and the effect that ES7 treatment has on the corresponding metabolome. The ES7 induced profile suggests metabolic compensations in central metabolism pathways in response to cytokinesis inhibition. Further, this study shows that long-term treatment of ES7 disrupts the homeostasis of primary metabolism in Arabidopsis seedlings, likely via alteration of hormonal regulation
Institute:California State University Fresno;University of California Davis
Department:Chemistry
Last Name:Krishnan
First Name:Krish
Address:SB-70 Department of Chemistry
Email:krish@csufresno.edu
Phone:559-278-7944

Subject:

Subject ID:SU001552
Subject Type:Plant
Subject Species:Arabidopsis thaliana
Taxonomy ID:3702

Factors:

Subject type: Plant; Subject species: Arabidopsis thaliana (Factor headings shown in green)

mb_sample_id local_sample_id Sample Type Concentration Sample Source Germination Replicates
SA124906Con:u00:Le:d04:aControl 0.0 ug Leaves day 04 a
SA124907Con:u00:Le:d04:bControl 0.0 ug Leaves day 04 b
SA124908Con:u00:Le:d04:cControl 0.0 ug Leaves day 04 c
SA124909Con:u00:Le:d05:aControl 0.0 ug Leaves day 05 a
SA124910Con:u00:Le:d05:bControl 0.0 ug Leaves day 05 b
SA124911Con:u00:Le:d05:cControl 0.0 ug Leaves day 05 c
SA124912Con:u00:Le:d06:aControl 0.0 ug Leaves day 06 a
SA124913Con:u00:Le:d06:bControl 0.0 ug Leaves day 06 b
SA124914Con:u00:Le:d06:cControl 0.0 ug Leaves day 06 c
SA124915Con:u00:Le:d07:aControl 0.0 ug Leaves day 07 a
SA124916Con:u00:Le:d07:bControl 0.0 ug Leaves day 07 b
SA124917Con:u00:Le:d07:cControl 0.0 ug Leaves day 07 c
SA124918Con:u00:Ro:d04:aControl 0.0 ug Roots day 04 a
SA124919Con:u00:Ro:d04:bControl 0.0 ug Roots day 04 b
SA124920Con:u00:Ro:d04:cControl 0.0 ug Roots day 04 c
SA124921Con:u00:Ro:d05:aControl 0.0 ug Roots day 05 a
SA124922Con:u00:Ro:d05:cControl 0.0 ug Roots day 05 c
SA124923Con:u00:Ro:d05:dControl 0.0 ug Roots day 05 d
SA124924Con:u00:Ro:d06:aControl 0.0 ug Roots day 06 a
SA124925Con:u00:Ro:d06:bControl 0.0 ug Roots day 06 b
SA124926Con:u00:Ro:d06:cControl 0.0 ug Roots day 06 c
SA124927Con:u00:Ro:d07:aControl 0.0 ug Roots day 07 a
SA124928Con:u00:Ro:d07:bControl 0.0 ug Roots day 07 b
SA124929Con:u00:Ro:d07:cControl 0.0 ug Roots day 07 c
SA124930ES7:u10:Le:d10:aES7 Treated 10.0 ug Leaves day 10 a
SA124931ES7:u10:Le:d10:bES7 Treated 10.0 ug Leaves day 10 b
SA124932ES7:u10:Le:d10:cES7 Treated 10.0 ug Leaves day 10 c
SA124933ES7:u10:Ro:d10:aES7 Treated 10.0 ug Roots day 10 a
SA124934ES7:u10:Ro:d10:bES7 Treated 10.0 ug Roots day 10 b
SA124935ES7:u10:Ro:d10:cES7 Treated 10.0 ug Roots day 10 c
SA124936ES7:u03:Le:d06:aES7 Treated 3.0 ug Leaves day 06 a
SA124937ES7:u03:Le:d06:bES7 Treated 3.0 ug Leaves day 06 b
SA124938ES7:u03:Le:d06:cES7 Treated 3.0 ug Leaves day 06 c
SA124939ES7:u03:Le:d10:aES7 Treated 3.0 ug Leaves day 10 a
SA124940ES7:u03:Le:d10:bES7 Treated 3.0 ug Leaves day 10 b
SA124941ES7:u03:Le:d10:cES7 Treated 3.0 ug Leaves day 10 c
SA124942ES7:u03:Ro:d06:aES7 Treated 3.0 ug Roots day 06 a
SA124943ES7:u03:Ro:d06:bES7 Treated 3.0 ug Roots day 06 b
SA124944ES7:u03:Ro:d06:cES7 Treated 3.0 ug Roots day 06 c
SA124945ES7:u03:Ro:d10:aES7 Treated 3.0 ug Roots day 10 a
SA124946ES7:u03:Ro:d10:bES7 Treated 3.0 ug Roots day 10 b
SA124947ES7:u03:Ro:d10:cES7 Treated 3.0 ug Roots day 10 c
SA124948ES7:u05:Le:d06:aES7 Treated 5.0 ug Leaves day 06 a
SA124949ES7:u05:Le:d06:bES7 Treated 5.0 ug Leaves day 06 b
SA124950ES7:u05:Le:d10:aES7 Treated 5.0 ug Leaves day 10 a
SA124951ES7:u05:Le:d10:bES7 Treated 5.0 ug Leaves day 10 b
SA124952ES7:u05:Le:d10:cES7 Treated 5.0 ug Leaves day 10 c
SA124953ES7:u05:Ro:d06:aES7 Treated 5.0 ug Roots day 06 a
SA124954ES7:u05:Ro:d06:bES7 Treated 5.0 ug Roots day 06 b
SA124955ES7:u05:Ro:d06:cES7 Treated 5.0 ug Roots day 06 c
SA124956ES7:u05:Ro:d06:rES7 Treated 5.0 ug Roots day 06 r
SA124957ES7:u05:Ro:d10:aES7 Treated 5.0 ug Roots day 10 a
SA124958ES7:u05:Ro:d10:bES7 Treated 5.0 ug Roots day 10 b
SA124959ES7:u05:Ro:d10:cES7 Treated 5.0 ug Roots day 10 c
Showing results 1 to 54 of 54

Collection:

Collection ID:CO001547
Collection Summary:Metabolomics data from leaves and roots as a function of treatment and time
Sample Type:Plant

Treatment:

Treatment ID:TR001567
Treatment Summary:Collected data

Sample Preparation:

Sampleprep ID:SP001560
Sampleprep Summary:NMR samples

Analysis:

Analysis ID:AN002454
Analysis Type:NMR
Num Factors:54
Num Metabolites:53
Units:mM

NMR:

NMR ID:NM000184
Analysis ID:AN002454
Instrument Name:Bruker
Instrument Type:FT-NMR
NMR Experiment Type:1D-1H
Spectrometer Frequency:800 MHz
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