Summary of Study ST000279
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000222. The data can be accessed directly via it's Project DOI: 10.21228/M8TP4R This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000279 |
| Study Title | Viral Effect on Metabolism (part II) |
| Study Type | Glycolysis/TCA/Nucleotide analysis (tissue/cells) |
| Study Summary | Small airway epithelial cell (SAEC) (Lonza Walkersville, Inc., MD) were grown according to the manufacturer's instructions in growth medium (SAGM) containing 0.03 mg/ml bovine pituitary extract (BPE), 0.5 µg/ml hydrocortisone, 0.5 ng/ml hEGF, 0.5 µg/ml epinephrine, 10 µg/ml transferrin, 5 µg/ml insulin, 0.1 ng/ml retinoic acid, 6.5ng/ml triiodothyronine, 50 µg/ml gentamicin and 50ng/ml Amphotericin-B, and 0.5 mg/ml bovine serum albumin (BSA, fatty acid free). When SAE grew to around 80 to 90% confluence, the cells were put into basal medium not supplemented with growth factors 3hours. Then the cell monolayers were infected with naïve hMPV at multiplicity of infection (MOI) of 3 to certain time. The supernatant was saved and cells were harvested and stored exactly according to the protocol provided by University of Michigan Metabolomics Core Facility for metabolomics analysis. 50mM ammonium acetate in water was used for rinse buffer. |
| Institute | University of Michigan |
| Department | Department of Pediatrics |
| Laboratory | Casola Lab (University of Texas Medical Branch) |
| Last Name | Zhao |
| First Name | Yanhua |
| Address | Galveston, TX |
| yazhao1@utmb.edu | |
| Phone | 409-443-1461 |
| Submit Date | 2015-02-05 |
| Num Groups | 4 |
| Total Subjects | 24 |
| Raw Data File Type(s) | d |
| Analysis Type Detail | GC-MS/LC-MS |
| Release Date | 2016-01-13 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | Time | Diseased |
|---|---|---|---|
| SA012255 | S00017199 | Naïve hMPV | 0hr |
| SA012256 | S00017200 | Naïve hMPV | 0hr |
| SA012257 | S00017201 | Naïve hMPV | 0hr |
| SA012258 | S00017206 | Naïve hMPV | 15hrs |
| SA012259 | S00017205 | Naïve hMPV | 15hrs |
| SA012260 | S00017207 | Naïve hMPV | 15hrs |
| SA012261 | S00017209 | Naïve hMPV | 24hrs |
| SA012262 | S00017210 | Naïve hMPV | 24hrs |
| SA012263 | S00017208 | Naïve hMPV | 24hrs |
| SA012264 | S00017203 | Naïve hMPV | 6hrs |
| SA012265 | S00017202 | Naïve hMPV | 6hrs |
| SA012266 | S00017204 | Naïve hMPV | 6hrs |
| SA012267 | S00017188 | RSV | 0hr |
| SA012268 | S00017189 | RSV | 0hr |
| SA012269 | S00017187 | RSV | 0hr |
| SA012270 | S00017195 | RSV | 15hrs |
| SA012271 | S00017193 | RSV | 15hrs |
| SA012272 | S00017194 | RSV | 15hrs |
| SA012273 | S00017198 | RSV | 24hrs |
| SA012274 | S00017197 | RSV | 24hrs |
| SA012275 | S00017196 | RSV | 24hrs |
| SA012276 | S00017190 | RSV | 6hrs |
| SA012277 | S00017192 | RSV | 6hrs |
| SA012278 | S00017191 | RSV | 6hrs |
| Showing results 1 to 24 of 24 |
