Summary of Study ST001041

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000697. The data can be accessed directly via it's Project DOI: 10.21228/M8KH4V This work is supported by NIH grant, U2C- DK119886.


This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001041
Study TitleDevelopment of a weaned pig model of enterotoxigenic E.coli-induced environmental enteropathy
Study TypeAnimal Model
Study SummaryEnvironmental Enteropathy (EE) is a subclinical condition primarily effecting developing countries believed to be caused by chronic fecal-oral contamination. The condition is characterized by chronic gut inflammation, malabsorption, stunting of growth, stunted villi, and reduced efficacy of oral vaccines. Due to the similarity of the gastrointestinal tract and immune response of swine and humans, the piglet is an attractive model for studying this condition. In this present study, piglets were challenged with either a chronic or acute dose of pathogenic E.coli in an attempt to mimic the symptoms of EE over a 7 day trial period. Throughout the study a number of biological samples were collected for analysis and are presented here, including feces for untargeted metabolomics analysis.
Texas A&M University
DepartmentAnimal Science
LaboratoryGill Lab
Last NameBoeckman
First NameJustin
Address400 Bizzell Street
Submit Date2018-08-21
Num Groups3
Total Subjects24
PublicationsIn progress
Analysis Type DetailGC-MS
Release Date2018-10-10
Release Version1
Justin Boeckman Justin Boeckman application/zip

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Subject type: Mammal; Subject species: Sus scrofa (Factor headings shown in green)

mb_sample_id local_sample_id Day Treatment
SA070221354505-1 Acute
SA070222354507-1 Acute
SA070223354506-1 Acute
SA0702323545101 Acute
SA0702333545111 Acute
SA0702343545081 Acute
SA0702353545091 Acute
SA070224354522-1 Chronic
SA070225354552-1 Chronic
SA070226354523-1 Chronic
SA070227354521-1 Chronic
SA0702363545261 Chronic
SA0702373545251 Chronic
SA0702383545271 Chronic
SA0702393545241 Chronic
SA070228354537-1 Control
SA070229354553-1 Control
SA070230354539-1 Control
SA070231354538-1 Control
SA0702403545411 Control
SA0702413545431 Control
SA0702423545421 Control
SA0702433545401 Control
SA0702443545123 Acute
SA0702453545133 Acute
SA0702463545153 Acute
SA0702473545143 Acute
SA0702483545303 Chronic
SA0702493545313 Chronic
SA0702503545293 Chronic
SA0702513545283 Chronic
SA0702523545463 Control
SA0702533545473 Control
SA0702543545453 Control
SA0702553545443 Control
SA0702563545166 Acute
SA0702573545176 Acute
SA0702583545196 Acute
SA0702593545186 Acute
SA0702603545336 Chronic
SA0702613545326 Chronic
SA0702623545356 Chronic
SA0702633545346 Chronic
SA0702643545486 Control
SA0702653545516 Control
SA0702663545506 Control
SA0702673545496 Control
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