Summary of Study ST001119

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000750. The data can be accessed directly via it's Project DOI: 10.21228/M8QX2G This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001119
Study TitleQuantification of microenvironmental metabolites in murine cancers reveals determinants of tumor nutrient availability
Study SummaryCancer cell metabolism is heavily influenced by microenvironmental factors, including nutrient availability. Therefore, knowledge of microenvironmental nutrient levels is essential to understand tumor metabolism. To measure the extracellular nutrient levels available to tumors, we developed a quantitative metabolomics method to measure the absolute concentrations of >118 metabolites in plasma and tumor interstitial fluid, the extracellular fluid that perfuses tumors. Comparison of nutrient levels in tumor interstitial fluid and plasma revealed that the nutrients available to tumors differ from those present in circulation. Further, by comparing interstitial fluid nutrient levels between autochthonous and transplant models of murine pancreatic and lung adenocarcinoma, we found that tumor type, anatomical location and animal diet affect local nutrient availability. These data provide a comprehensive characterization of the nutrients present in the tumor microenvironment of widely used models of lung and pancreatic cancer and identify factors that influence metabolite levels in tumors.
Institute
University of Chicago
Last NameMuir
First NameAlexander
Address929 E 57th St. W GCIS 306, Chicago, Illinois, 60637, USA
Emailmuir.alexander@gmail.com
Phone5104950975
Submit Date2019-01-03
Raw Data AvailableYes
Raw Data File Type(s)raw(Thermo)
Analysis Type DetailLC-MS
Release Date2019-03-06
Release Version1
Alexander Muir Alexander Muir
https://dx.doi.org/10.21228/M8QX2G
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Factors:

Subject type: Mammal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Sample Type
SA0776801234 KPK 3 TIFKeap1_mutant_lung_subcutaneous
SA0776811234 KPK 4 TIFKeap1_mutant_lung_subcutaneous
SA0776821234 KPK 5 TIFKeap1_mutant_lung_subcutaneous
SA0776831234 KPK 1 TIFKeap1_mutant_lung_subcutaneous
SA0776841233 KPK 1 TIFKeap1_mutant_lung_subcutaneous
SA0776851233 KPK 6 TIFKeap1_mutant_lung_subcutaneous
SA0776861233 KPK 5 TIFKeap1_mutant_lung_subcutaneous
SA0776871234 KPK 6 TIFKeap1_mutant_lung_subcutaneous
SA0776881233 KP 5 TIFlung_subcutaneous
SA0776891233 KP 6 TIFlung_subcutaneous
SA0776901234 KP 1 TIFlung_subcutaneous
SA0776911233 KP 4 TIFlung_subcutaneous
SA0776921234 KP 2 TIFlung_subcutaneous
SA0776931233 KP 3 TIFlung_subcutaneous
SA0776941234 KP 4 TIFlung_subcutaneous
SA0776951234 KP 3 TIFlung_subcutaneous
SA0776961234 KP 5 TIFlung_subcutaneous
SA0776971234 KP 6 TIFlung_subcutaneous
SA0776985197 TIF repeatpancreatic ductal adenocarcinoma
SA07769958 TIFpancreatic ductal adenocarcinoma
SA077700172 TIF repeatpancreatic ductal adenocarcinoma
SA077701AL1 TIF repeatpancreatic ductal adenocarcinoma
SA077702268 TIF repeatpancreatic ductal adenocarcinoma
SA0777031339 TIF repeatpancreatic ductal adenocarcinoma
SA077704142 TIF repeatpancreatic ductal adenocarcinoma
SA077705922 TIFpancreatic ductal adenocarcinoma
SA077706142 TIFpancreatic ductal adenocarcinoma
SA077707268 TIFpancreatic ductal adenocarcinoma
SA077708AL1 TIFpancreatic ductal adenocarcinoma
SA0777095197 TIFpancreatic ductal adenocarcinoma
SA077710172 TIFpancreatic ductal adenocarcinoma
SA0777111339 TIFpancreatic ductal adenocarcinoma
SA077712TBt0 plasma 711pancreatic ductal adenocarcinoma plasma
SA077713TBt0 plasma 712pancreatic ductal adenocarcinoma plasma
SA077714TBt0 plasma 705pancreatic ductal adenocarcinoma plasma
SA077715TBt0 plasma 710pancreatic ductal adenocarcinoma plasma
SA077716TBt0 plasma 707pancreatic ductal adenocarcinoma plasma
SA077717TBt0 plasma 708pancreatic ductal adenocarcinoma plasma
SA0777184198_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA0777194300_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077720X3_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077721X4_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA0777223731_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077723B0_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077724X2_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077725B2_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077726B1_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077727A1_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077728A0_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA07772958_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA0777305197_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077731AL1_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077732172_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077733922_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077734142_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077735268_Plasmapancreatic ductal adenocarcinoma plasma cardiac puncture
SA077736X2 TIFpancreatic ductal adenocarcinoma subcutaneous
SA077737X1 TIFpancreatic ductal adenocarcinoma subcutaneous
SA077738X4 TIFpancreatic ductal adenocarcinoma subcutaneous
SA077739X5 TIFpancreatic ductal adenocarcinoma subcutaneous
SA077740X3 TIFpancreatic ductal adenocarcinoma subcutaneous
Showing results 1 to 61 of 61
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