Summary of Study ST002412
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001552. The data can be accessed directly via it's Project DOI: 10.21228/M8342Z This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST002412 |
| Study Title | Metabolic effects of the protein kinase R |
| Study Type | Biomedical research |
| Study Summary | Spleen-derived macrophage from WT or Eif2ak2-/- (gene encoding PKR protein kinase) mice are treated with a synthetic RNA mimetic (polyinosinic:polycytidylic acid) to activate the kinase and metabolites were collected for analysis. The data identified 325 putative metabolites in the cell extracts, with a large number of significant differences between the Eif2ak2- /- and WT sample groups. Metabolite levels are predominantly suppressed in the WT compared to the Eif2ak2-/- cells, with depletion of specific metabolites in amino acid, carbohydrate, lipid and nucleotide pathways, while several amino acid metabolites were significantly elevated in the WT cells compared to the Eif2ak2-/-. The changes appear to delineate a pseudo-starvation response in the WT cells. Phosphate energy metabolism is altered with decreased creatine and phosphocreatine and a compensatory increase in phosphorylated guanidinoacetate in the WT compared to the Eif2ak2- /- cells. There appears to be a constraint in glycolysis in the WT cells, most clearly in the pentose phosphate pathway. |
| Institute | Hudson Institute of Medical Research |
| Department | CIIID |
| Laboratory | Molecular Immunology |
| Last Name | Sadler |
| First Name | Anthony |
| Address | 27-31 Wright st, Clayton, VIC 3168 |
| Anthony.sadler@hudson.org.au | |
| Phone | +61 4 85722722 |
| Submit Date | 2022-12-15 |
| Num Groups | 2 |
| Total Subjects | NA |
| Num Males | NA |
| Num Females | NA |
| Study Comments | KO vs WT |
| Publications | Suppression of the nucleic acid precursor ribose 5-phosphate by RNA-mediated antiviral immunity |
| Raw Data Available | Yes |
| Raw Data File Type(s) | raw(Thermo) |
| Analysis Type Detail | LC-MS |
| Release Date | 2023-01-04 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Cultured cells; Subject species: Mus musculus (Factor headings shown in green)
| mb_sample_id | local_sample_id | treatment |
|---|---|---|
| SA241922 | C220181610_Extr_blank_1 | Extraction blank |
| SA241933 | C220181016_Blank_2 | injection blank |
| SA241934 | C220181016_Blank_4 | injection blank |
| SA241935 | C220181016_Blank_3 | injection blank |
| SA241936 | C220181016_Blank_1 | injection blank |
| SA241923 | C220181610_PKR_Null_3 | PKR knockout |
| SA241924 | C220181610_PKR_Null_4 | PKR knockout |
| SA241925 | C220181610_PKR_Null_2 | PKR knockout |
| SA241926 | C220181610_PKR_Null_5 | PKR knockout |
| SA241927 | C220181610_PKR_Null_1 | PKR knockout |
| SA241937 | C220181016_QC_3 | pooled QC |
| SA241938 | C220181016_QC_1 | pooled QC |
| SA241939 | C220181016_QC_2 | pooled QC |
| SA241940 | C220181016_QC_4 | pooled QC |
| SA241928 | C220181610_WT_5 | WT |
| SA241929 | C220181610_WT_3 | WT |
| SA241930 | C220181610_WT_1 | WT |
| SA241931 | C220181610_WT_2 | WT |
| SA241932 | C220181610_WT_4 | WT |
| Showing results 1 to 19 of 19 |
