Summary of Study ST001752
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001123. The data can be accessed directly via it's Project DOI: 10.21228/M8JD7N This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001752 |
| Study Title | Dual RNA regulator VcdRP in V. cholerae modulates central metabolism |
| Study Summary | Bacterial small RNAs (sRNAs) are well-known to modulate gene expression by base-pairing with trans-coded transcripts and are typically considered to be non-coding. However, several sRNAs have been reported to also contain an open reading frame and thus are considered dual-function regulators. We discovered a dual-function regulator from Vibrio cholerae, called VcdRP, harboring a 29 amino acid protein (VcdP), as well as a base-pairing sequence. In this study, we measured the metabolite abundance of glycolytic and citric acid cycle intermediates using LC-MS. |
| Institute | Helmholtz Centre for Environmental Research |
| Department | Molecular Systems Biology |
| Laboratory | Functional Metabolomics |
| Last Name | Engelmann |
| First Name | Beatrice |
| Address | Permoserstraße 15, Leipzig, Saxony, 03418, Germany |
| beatrice.engelmann@ufz.de | |
| Phone | 00493412351099 |
| Submit Date | 2021-04-14 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | wiff |
| Analysis Type Detail | LC-MS |
| Release Date | 2021-05-01 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
| Analysis ID | AN002855 |
|---|---|
| Analysis type | MS |
| Chromatography type | Ion pair |
| Chromatography system | Agilent 1290 Infinity II |
| Column | Waters XSelect HSS T3 XP (150 x 2.1mm,2.5um) |
| MS Type | ESI |
| MS instrument type | Triple quadrupole |
| MS instrument name | AB Sciex 6500+ QTRAP |
| Ion Mode | NEGATIVE |
| Units | relative abundance |
MS:
| MS ID: | MS002648 |
| Analysis ID: | AN002855 |
| Instrument Name: | AB Sciex 6500+ QTRAP |
| Instrument Type: | Triple quadrupole |
| MS Type: | ESI |
| MS Comments: | MS acquisition as well as data processing software was Analyst vs 1.7.0 |
| Ion Mode: | NEGATIVE |
