Summary of study ST000591

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000432. The data can be accessed directly via it's Project DOI: 10.21228/M86W3V This work is supported by NIH grant, U2C- DK119886.

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Study IDST000591
Study TitleMetablomic profiling in acc1-5 mutant and wild type arabidiopsis
Study SummaryThis experiment tests the metabolic consequence of a mutation at the ACC1 gene (At1g36160). The allele of acc1-5 bearing an EMS mutation, which cause a single amino acid substitution from aspartic acid to asparagine. Seedlings from both the acc1-5 mutant and the wild type were harvested and analyzed via HILIC LC-MS. Of particular interest are metabolites which would be affected by depletion of malonyl-CoA pools (flavenoids) and primary metabolites.
Institute
Agriculture and Agri-Food Canada
DepartmentLondon Research and Development Centre
LaboratoryRenaud
Last NameRenaud
First NameJustin
Address1391 Sandford street, London, Ontario, Canada
Emailjustin.renaud@agr.gc.ca
Phone519-953-6698
Submit Date2017-03-12
PublicationsChen, Chen, et al. "Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis." Nature Plants (2017): 1.
Raw Data AvailableYes
Raw Data File Type(s).raw
Analysis Type DetailLC-MS
Release Date2017-10-25
Release Version1
Justin Renaud Justin Renaud
https://dx.doi.org/10.21228/M86W3V
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000432
Project DOI:doi: 10.21228/M86W3V
Project Title:Understanding the effects of acetyl-CoA carboxylase (ACC1) upon the metabolite profiles of Arabidopsis
Project Type:Single gene knockout impact on Arabidopsis metabolites
Project Summary:The arabidopsis gene, acetyl-CoA carboxylase1 (ACC1) catalyzes the carboxylation of acetyl-CoA to malonyl-CoA. When this gene malfunctions, there are elevated levels of acetyl-CoA which have been shown to increase levels of histone acetylation. This project aims to understand how a malfunctioning ACC1 effects the levels of primary metabolites by comparing to metabolite profiles of wild type Arabidopsis grown under identical conditions.
Institute:Agriculture and Agri-Food Canada
Department:Chemistry
Laboratory:Renaud
Last Name:Renaud
First Name:Justin
Address:1391 Sandford Street
Email:justin.renaud@agr.gc.ca
Phone:519-953-6698
Funding Source:Natural Science and Engineering Research Council of Canada (R4019A01) and Agriculture and Agri-Food Canada A-base
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