Summary of study ST000044

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000043. The data can be accessed directly via it's Project DOI: 10.21228/M8J017 This work is supported by NIH grant, U2C- DK119886.

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Study IDST000044
Study TitlePilot experiment looking for the existence of certain molecules in pancreatic cancer cells
Study SummaryPilot experiment looking for the existence of certain molecules in pancreatic cancer cells
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Email mkachman@umich.edu
Submit Date2014-03-22
Num Groups3
Total Subjects6
Raw Data AvailableYes
Raw Data File Type(s).stg,.bin,.xml,.cG,.cd
Uploaded File Size2.1 G
Analysis Type DetailLC-MS
Release Date2014-04-21
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8J017
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000043
Project DOI:doi: 10.21228/M8J017
Project Title:Pancreas Cancer Studies
Project Type:MS study
Project Summary:Studies with Pancreatic cancer tissues
Institute:University of Michigan
Department:Internal Medicine
Laboratory:Burant Lab
Last Name:Beecher
First Name:Chris
Email:chrisbee@med.umich.edu
Phone:734-232-0815

Subject:

Subject ID:SU000061
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Pancreas tissue type
SA001879S00010704Normal area of the pancreas with tumor
SA001880S00010702Normal area of the pancreas with tumor
SA001881S00010705Normal pancreas
SA001882S00010706Normal pancreas
SA001883S00010703Pancreas tumor
SA001884S00010701Pancreas tumor
Showing results 1 to 6 of 6

Collection:

Collection ID:CO000044
Sample Type:Tissues

Treatment:

Treatment ID:TR000062

Sample Preparation:

Sampleprep ID:SP000057
Sampleprep Protocol Filename:EX00189-Sample_preparation_protocol.pdf

Combined analysis:

Analysis ID AN000068 AN000069
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent 1200 Agilent 1200
Column Waters Acquity HSS T3 Waters Acquity HSS T3
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode POSITIVE NEGATIVE
Units Counts Counts

Chromatography:

Chromatography ID:CH000045
Methods ID:AQM003:AQM004
Methods Filename:Column1_jetstream_grad9.m.zip
Instrument Name:Agilent 1200
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase

MS:

MS ID:MS000049
Analysis ID:AN000068
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
  
MS ID:MS000050
Analysis ID:AN000069
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
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