Summary of Study ST000523

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000386. The data can be accessed directly via it's Project DOI: 10.21228/M8559K This work is supported by NIH grant, U2C- DK119886.

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Study IDST000523
Study TitlePrenatal exposures and Metabolite and Lipid Profiles
Study SummaryOur goal is to examine relationships between prenatal exposures (to metals, BPA, and phthalates) and metabolite and lipid profiles using untargeted approaches in mother-infant pairs from the Michigan Mother Infant Pairs (MMIP) cohort. Three plasma samples will be analyzed from each family: two maternal samples (from first trimester and time of admission for labor and delivery) and one child sample (from cord blood). We are interested in differences/correlations between family samples over time, and also the extent to which maternal exposures impact the lipidomes and metabolomes of both family members.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2016-12-16
Num Groups09-13-2016
Total Subjects168
Num Males168
Raw Data AvailableYes
Raw Data File Type(s)d, wiff
Chear StudyYes
Analysis Type DetailLC-MS
Release Date2024-12-31
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8559K
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000386
Project DOI:doi: 10.21228/M8559K
Project Title:Metabolome and lipidome of mother-infant cohort
Project Summary:A pilot analysis of the metabolome and lipidome of mother-infant pairs from Michigan using three samples (two maternal and one child) from each pair. Interested in prenatal environmental exposures and how they alter the metabolome and lipidome
Institute:University of Michigan
Department:Environmental Health Sciences
Laboratory:Padmanabhan Lab
Last Name:Padmanabhan
First Name:Vasantha
Address:Ann Arbor, MI
Email:vasantha@umich.edu
Phone:734-647-0276

Subject:

Subject ID:SU000545
Subject Type:Animal
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Mammals

Factors:

Subject type: Animal; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Gender Timing of Sample Collection Type of Family Member
SA027289R000000098CHEAR_REFERENCE CHEAR_REFERENCE CHEAR_REFERENCE
SA027290S00024101Female 1st trimester mother
SA027291S00024100Female 1st trimester mother
SA027292S00024102Female 1st trimester mother
SA027293S00024103Female 1st trimester mother
SA027294S00024099Female 1st trimester mother
SA027295S00024104Female 1st trimester mother
SA027296S00024097Female 1st trimester mother
SA027297S00024094Female 1st trimester mother
SA027298S00024093Female 1st trimester mother
SA027299S00024095Female 1st trimester mother
SA027300S00024096Female 1st trimester mother
SA027301S00024105Female 1st trimester mother
SA027302S00024098Female 1st trimester mother
SA027303S00024107Female 1st trimester mother
SA027304S00024116Female 1st trimester mother
SA027305S00024115Female 1st trimester mother
SA027306S00024117Female 1st trimester mother
SA027307S00024118Female 1st trimester mother
SA027308S00024063Female 1st trimester mother
SA027309S00024114Female 1st trimester mother
SA027310S00024113Female 1st trimester mother
SA027311S00024108Female 1st trimester mother
SA027312S00024092Female 1st trimester mother
SA027313S00024109Female 1st trimester mother
SA027314S00024110Female 1st trimester mother
SA027315S00024111Female 1st trimester mother
SA027316S00024106Female 1st trimester mother
SA027317S00024112Female 1st trimester mother
SA027318S00024064Female 1st trimester mother
SA027319S00024071Female 1st trimester mother
SA027320S00024073Female 1st trimester mother
SA027321S00024074Female 1st trimester mother
SA027322S00024076Female 1st trimester mother
SA027323S00024075Female 1st trimester mother
SA027324S00024070Female 1st trimester mother
SA027325S00024069Female 1st trimester mother
SA027326S00024065Female 1st trimester mother
SA027327S00024091Female 1st trimester mother
SA027328S00024066Female 1st trimester mother
SA027329S00024067Female 1st trimester mother
SA027330S00024068Female 1st trimester mother
SA027331S00024077Female 1st trimester mother
SA027332S00024072Female 1st trimester mother
SA027333S00024087Female 1st trimester mother
SA027334S00024085Female 1st trimester mother
SA027335S00024088Female 1st trimester mother
SA027336S00024089Female 1st trimester mother
SA027337S00024090Female 1st trimester mother
SA027338S00024078Female 1st trimester mother
SA027339S00024084Female 1st trimester mother
SA027340S00024086Female 1st trimester mother
SA027341S00024083Female 1st trimester mother
SA027342S00024079Female 1st trimester mother
SA027343S00024081Female 1st trimester mother
SA027344S00024080Female 1st trimester mother
SA027345S00024082Female 1st trimester mother
SA027346S00024185Female term (birth) child
SA027347S00024184Female term (birth) child
SA027348S00024186Female term (birth) child
SA027349S00024193Female term (birth) child
SA027350S00024196Female term (birth) child
SA027351S00024195Female term (birth) child
SA027352S00024191Female term (birth) child
SA027353S00024177Female term (birth) child
SA027354S00024178Female term (birth) child
SA027355S00024197Female term (birth) child
SA027356S00024180Female term (birth) child
SA027357S00024181Female term (birth) child
SA027358S00024182Female term (birth) child
SA027359S00024183Female term (birth) child
SA027360S00024217Female term (birth) child
SA027361S00024223Female term (birth) child
SA027362S00024222Female term (birth) child
SA027363S00024224Female term (birth) child
SA027364S00024226Female term (birth) child
SA027365S00024228Female term (birth) child
SA027366S00024199Female term (birth) child
SA027367S00024216Female term (birth) child
SA027368S00024227Female term (birth) child
SA027369S00024204Female term (birth) child
SA027370S00024215Female term (birth) child
SA027371S00024205Female term (birth) child
SA027372S00024201Female term (birth) child
SA027373S00024210Female term (birth) child
SA027374S00024206Female term (birth) child
SA027375S00024167Female term (birth) mother
SA027376S00024168Female term (birth) mother
SA027377S00024166Female term (birth) mother
SA027378S00024165Female term (birth) mother
SA027379S00024169Female term (birth) mother
SA027380S00024164Female term (birth) mother
SA027381S00024173Female term (birth) mother
SA027382S00024163Female term (birth) mother
SA027383S00024174Female term (birth) mother
SA027384S00024172Female term (birth) mother
SA027385S00024171Female term (birth) mother
SA027386S00024170Female term (birth) mother
SA027387S00024150Female term (birth) mother
SA027388S00024139Female term (birth) mother
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Collection:

Collection ID:CO000539
Collection Summary:None
Sample Type:Plasma

Treatment:

Treatment ID:TR000559
Treatment Summary:None

Sample Preparation:

Sampleprep ID:SP000552
Sampleprep Summary:None
Sampleprep Protocol Filename:EX00616-Sample_preparation_protocol.pdf

Combined analysis:

Analysis ID AN000798 AN000799 AN000800 AN000801
Analysis type MS MS MS MS
Chromatography type Reversed phase Reversed phase Reversed phase Reversed phase
Chromatography system Agilent 1290 Infinity Agilent 1290 Infinity Agilent 1290 Infinity Agilent 1290 Infinity
Column Waters Acquity HSS T3 Waters Acquity HSS T3 Waters Acquity HSS T3 Waters Acquity HSS T3
MS Type ESI ESI ESI ESI
MS instrument type QTOF QTOF Triple TOF Triple TOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode POSITIVE NEGATIVE POSITIVE NEGATIVE
Units Peak area Peak area Peak area Peak area

Chromatography:

Chromatography ID:CH000573
Methods Filename:RP Pos Untargeted_2016_Agilent_460ulmin_2mm.m
Chromatography Comments:DQM0272
Instrument Name:Agilent 1290 Infinity
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase
  
Chromatography ID:CH000574
Methods Filename:RP Neg Untargeted_2016_460ulmin_Agilent.m
Chromatography Comments:DQM0441
Instrument Name:Agilent 1290 Infinity
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase
  
Chromatography ID:CH000575
Methods Filename:LIP_15min_MSMS_Jenny_new_20min_Positive.zip
Chromatography Comments:DQM0460
Instrument Name:Agilent 1290 Infinity
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase
  
Chromatography ID:CH000576
Methods Filename:LIP_15min_MSMS_Jenny_New_20min_Negative.zip
Chromatography Comments:DQM0459
Instrument Name:Agilent 1290 Infinity
Column Name:Waters Acquity HSS T3
Chromatography Type:Reversed phase

MS:

MS ID:MS000705
Analysis ID:AN000798
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:EX00616-Data_analysis.pdf
  
MS ID:MS000706
Analysis ID:AN000799
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:EX00616-Data_analysis.pdf
  
MS ID:MS000707
Analysis ID:AN000800
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:EX00616-Data_analysis.pdf
  
MS ID:MS000708
Analysis ID:AN000801
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:Triple TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:EX00616-Data_analysis.pdf
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