Summary of Study ST000727

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000524. The data can be accessed directly via it's Project DOI: 10.21228/M8XQ1W This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

Perform statistical analysis  |  Show all samples  |  Show named metabolites  |  Download named metabolite data  
Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data files (Contains raw data)
Study IDST000727
Study TitleBariatric surgery and breast cancer
Study TypeMS analysis
Study SummaryThis is a double blind study, to measure short chain fatty acids in colons of mouse that have gone through bariatric surgery and the mouse that have gone through sham surgery (as control group). We would like to get a ratio of different types of fatty acids in the colons of these animals. This project looks at the effects of bariatric surgery on short chain fatty acids produced by microbiota ultimately the effects on the growth and suppression of breast cancer.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups2
Total Subjects27
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailGC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8XQ1W
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000524
Project DOI:doi: 10.21228/M8XQ1W
Project Title:Bariatric Surgery and Breast Cancer
Project Type:MS analysis
Project Summary:Measure Short chain Fatty Acids in colon
Institute:University of Michigan
Department:Surgery
Laboratory:Seeley Lab
Last Name:Seeley
First Name:Randy
Address:Ann Arbor, MI
Email:seeleyrj@umich.edu
Phone:734-615-2880

Subject:

Subject ID:SU000750
Subject Type:Mouse
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal

Factors:

Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Treatment
SA040821S00020253Sham
SA040822S00020252Sham
SA040823S00020254Sham
SA040824S00020243Sham
SA040825S00020257Sham
SA040826S00020251Sham
SA040827S00020255Sham
SA040828S00020256Sham
SA040829S00020244Sham
SA040830S00020250Sham
SA040831S00020246Sham
SA040832S00020245Sham
SA040833S00020247Sham
SA040834S00020249Sham
SA040835S00020248Sham
SA040836S00020267VSG
SA040837S00020266VSG
SA040838S00020269VSG
SA040839S00020265VSG
SA040840S00020268VSG
SA040841S00020261VSG
SA040842S00020259VSG
SA040843S00020258VSG
SA040844S00020260VSG
SA040845S00020262VSG
SA040846S00020263VSG
SA040847S00020264VSG
Showing results 1 to 27 of 27

Collection:

Collection ID:CO000744
Collection Summary:-

Treatment:

Treatment ID:TR000764
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000757
Sampleprep Summary:-
Sampleprep Protocol Filename:A007_-_Short_Chain_Fatty_Acids.pdf

Combined analysis:

Analysis ID AN001140
Analysis type MS
Chromatography type GC
Chromatography system Agilent 7890N
Column Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
MS Type EI
MS instrument type Single quadrupole
MS instrument name Agilent 5975
Ion Mode POSITIVE
Units pmol/mg

Chromatography:

Chromatography ID:CH000800
Instrument Name:Agilent 7890N
Column Name:Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um)
Chromatography Type:GC

MS:

MS ID:MS001035
Analysis ID:AN001140
Instrument Name:Agilent 5975
Instrument Type:Single quadrupole
MS Type:EI
Ion Mode:POSITIVE
Analysis Protocol File:A007_-_Short_Chain_Fatty_Acids.pdf
  logo