Summary of Study ST001129

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000703. The data can be accessed directly via it's Project DOI: 10.21228/M8T10P This work is supported by NIH grant, U2C- DK119886.

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Study IDST001129
Study TitleP4HA1 knockdown in the breast cell line MDA231 (part III)
Study Typeisotope tracer
Study SummaryDetermine the effect of knocking down P4HA1 in the MDA231 cell line (including alterations to metabolic pathways).Control versus knockdown
Institute
University of Kentucky
DepartmentMarkey Cancer Center
Last NameXiong
First NameGaofeng
AddressBBSRC361, 741 South Limestone, Lexington, KY 40536, USA
Emailgaofeng.xiong@uky.edu
Phone000-000-0000
Submit Date2019-01-30
Study CommentsFor additional comments about the study, like listing a publication.
Raw Data AvailableYes
Raw Data File Type(s)fid
Analysis Type DetailNMR
Release Date2019-03-06
Release Version1
Gaofeng Xiong Gaofeng Xiong
https://dx.doi.org/10.21228/M8T10P
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Project:

Project ID:PR000703
Project DOI:doi: 10.21228/M8T10P
Project Title:P4HA1 knockdown in the breast cell line MDA231
Project Summary:Determine the effect of knocking down P4HA1 in the MDA231 cell line (including alterations to metabolic pathways).
Institute:University of Kentucky
Department:Markey Cancer Center
Last Name:Xu
First Name:Ren
Address:BBSRC361, 741 South Limestone, Lexington, KY 40536, USA
Email:ren.xu2010@uky.edu
Phone:000-000-0000

Subject:

Subject ID:SU001200
Subject Type:Animal
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: Animal; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id protocol.id
SA0782751_MDA231_12CGlc_shCTL_rep1-cells-polar_NMR_A12CGlc_shCTL
SA0782764_MDA231_12CGlc_shP4HA1_rep1-cells-polar_NMR_A12CGlc_shP4HA1
SA0782773_MDA231_13CGlc_shCTL_rep2-cells-polar_NMR_A13CGlc_shCTL
SA0782782_MDA231_13CGlc_shCTL_rep1-cells-polar_NMR_A13CGlc_shCTL
SA0782796_MDA231_13CGlc_shP4HA1_rep2-cells-polar_NMR_A13CGlc_shP4HA1
SA0782805_MDA231_13CGlc_shP4HA1_rep1-cells-polar_NMR_A13CGlc_shP4HA1
Showing results 1 to 6 of 6

Collection:

Collection ID:CO001194
Collection Summary:Collection and quench of cells in culture
Collection Protocol ID:cell_quench_collection
Collection Protocol Filename:3A_Cells_Quench_Cell_Fan_20170412.pdf
Sample Type:cultured cells

Treatment:

Treatment ID:TR001215
Treatment Summary:Cells grown in unlabeled glucose and infected with empty vector. Cells grown in unlabeled glucose and infected with shP4HA1 lentivirus. Cells grown in labeled glucose and infected with empty vector. Cells grown in labeled glucose and infected with shP4HA1 lentivirus.
Treatment Protocol ID:12CGlc_shCTL 12CGlc_shP4HA1 13CGlc_shCTL 13CGlc_shP4HA1

Sample Preparation:

Sampleprep ID:SP001208
Sampleprep Summary:Polar extraction from cells. Protein extraction and quantification.
Sampleprep Protocol ID:polar_extraction protein_extraction
Sampleprep Protocol Filename:4B_Extract_Polar_Lipid_Prot_Fan_070417.pdf
4D_17Jun4_Fan_Prot_Quant.pdf

Analysis:

Analysis ID:AN001866
Analysis Type:NMR
Num Factors:4
Num Metabolites:175
Units:normalized peak area

NMR:

NMR ID:NM000144
Analysis ID:AN001866
Instrument Name:Agilent 600
Instrument Type:FT-NMR
NMR Experiment Type:PRESAT (1H1D)
Standard Concentration:0.5 mM
Spectrometer Frequency:600 MHz
NMR Probe:cryogenic triple resonance HCN
NMR Solvent:D20
NMR Tube Size:1.7 mm
Shimming Method:gradient shimming
Pulse Sequence:PRESAT
Water Suppression:presaturation
Chemical Shift Ref Cpd:DSS
Temperature:15 celsius
Acquisition Time:2 s
Relaxation Delay:4 s
Baseline Correction Method:Bernstein Polynomial
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