Summary of study ST001442

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000992. The data can be accessed directly via it's Project DOI: 10.21228/M8G68B This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001442
Study TitleHuman Optic Nerve Glaucoma and Control Lipidomes
Study SummaryWe collected optic nerve samples from either glaucoma or control patients and performed lipidomics analysis on the optic nerve.
Institute
University of Miami
Last NameBhattacharya
First NameSanjoy
Address1638 NW 10th Avenue, Miami, Florida, 33136, USA
Emailsbhattacharya@med.miami.edu
Phone3054824103
Submit Date2019-12-18
PublicationsChauhan et al PMID: 31022733 PMCID: PMC6485987 doi: 10.1167/iovs.18-25802 Milbeck et al doi:https://doi.org/10.1167/iovs.61.6.60
Raw Data AvailableYes
Raw Data File Type(s).raw
Analysis Type DetailMS
Release Date2020-08-20
Release Version1
Sanjoy Bhattacharya Sanjoy Bhattacharya
https://dx.doi.org/10.21228/M8G68B
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR000992
Project DOI:doi: 10.21228/M8G68B
Project Title:Human Optic Nerve Glaucoma and Control Lipidomes
Project Summary:We performed a lipidomics analysis of patient with either glaucoma or control with various causes of death.
Institute:University of Miami
Department:Bascom Palmer Eye Institute
Laboratory:Sanjoy Bhattacharya Lab
Last Name:Bhattacharya
First Name:Sanjoy
Address:1638 NW 10th Avenue, Miami, Florida, 33136, USA
Email:sbhattacharya@med.miami.edu
Phone:3054824103

Subject:

Subject ID:SU001516
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Group
SA1223918NControl
SA12239210NControl
SA1223931NControl
SA1223947NControl
SA12239511NControl
SA1223969NControl
SA1223976NControl
SA1223982NControl
SA1223994NControl
SA1224003NControl
SA1224015NControl
SA1224029GGlaucoma
SA12240310GGlaucoma
SA12240412GGlaucoma
SA1224058GGlaucoma
SA12240611GGlaucoma
SA1224071GGlaucoma
SA1224083GGlaucoma
SA1224092GGlaucoma
SA1224104GGlaucoma
SA1224115GGlaucoma
SA1224126GGlaucoma
SA1224137GGlaucoma
Showing results 1 to 23 of 23

Collection:

Collection ID:CO001511
Collection Summary:Samples were collected from the optic nerve and processed via LC-MS/MS. The optic nerve always came from diseased patients.
Sample Type:Eye tissue

Treatment:

Treatment ID:TR001531
Treatment Summary:No Treatment

Sample Preparation:

Sampleprep ID:SP001524
Sampleprep Summary:Samples were collected via the Bligh-Diar method to extract lipids. Samples were speed-vacuumed and re-suspended in 1:1 chloroform-methanol.

Combined analysis:

Analysis ID AN002410
Analysis type MS
Chromatography type None (Direct infusion)
Chromatography system none
Column none
MS Type ESI
MS instrument type Orbitrap
MS instrument name Thermo Q Exactive Orbitrap
Ion Mode POSITIVE
Units peak area

Chromatography:

Chromatography ID:CH001771
Instrument Name:none
Column Name:none
Flow Rate:400
Chromatography Type:None (Direct infusion)

MS:

MS ID:MS002251
Analysis ID:AN002410
Instrument Name:Thermo Q Exactive Orbitrap
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:Resolution was 17,500 The loop count was 10 Top ten method was used for peak finding.
Ion Mode:POSITIVE
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