Summary of study ST001512

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001019. The data can be accessed directly via it's Project DOI: 10.21228/M80408 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

Show all samples  |  Download mwTab file (text)   |  Download mwTab file(JSON)   |  Download data (Contains raw data)
Study IDST001512
Study TitleDiel investments in phytoplankton metabolite production influenced by associated heterotrophic bacteria
Study TypeIncubation experiment
Study SummaryOrganic substrate transfer between photoautotrophic and heterotrophic microbes in the surface ocean is a central but poorly understood process in the global carbon cycle. This study developed a co-culture system of marine diatom Thalassiosira pseudonana and heterotrophic bacterium Ruegeria pomeroyi, and addressed diel changes in phytoplankton endometabolite production using nuclear magnetic resonance (NMR) and bacterial metabolite consumption using gene expression. Here we deposit data for NMR analysis from the study. Samples were collected every 6 hours over two days under a diel light cycle. During the course of the study, we observed an increase in some phytoplankton endometabolites presumably due to the effects of the associated bacteria. We introduced an additional experiment and tested this possibility by comparing phytoplankton endometabolite accumulation between axenic treatments and bacteria coculture treatments.
Institute
University of Georgia
DepartmentDepartment of Marine Sciences; Complex Carbohydrate Research Center
LaboratoryMoran Lab; Edison Lab
Last NameUchimiya
First NameMario
Address315 Riverbend Rd, Athens, GA 30602
Emailmario.uchimiya@uga.edu
Phone‭(706) 542-8387‬
Submit Date2020-10-18
Raw Data AvailableYes
Raw Data File Type(s)pdata, scon2, .par
Analysis Type DetailNMR
Release Date2020-11-02
Release Version1
Mario Uchimiya Mario Uchimiya
https://dx.doi.org/10.21228/M80408
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR001019
Project DOI:doi: 10.21228/M80408
Project Title:Diel investments in phytoplankton metabolite production influenced by associated heterotrophic bacteria
Institute:University of Georgia
Department:Department of Marine Sciences; Complex Carbohydrate Research Center
Laboratory:Moran Lab; Edison Lab
Last Name:Uchimiya
First Name:Mario
Address:315 Riverbend Rd, Athens, GA 30602
Email:mario.uchimiya@uga.edu
Phone:‭(706) 542-8387‬
Funding Source:The Gordon and Betty Moore Foundation (5503); NSF (IOS-1656311); The Simons Foundation (542391); JSPS (Research Fellowship for Young Scientists and Grant-in-Aid for JSPS Fellows); Swedish Research Council (2018-06571)
  logo