Summary of Study ST001794

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001138. The data can be accessed directly via it's Project DOI: 10.21228/M8M68K This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001794
Study TitleMetabolomics Analysis of Time-Series Gastrointestinal Lumen Samples
Study SummarySamples were retrieved from a human small intestine samples over 8 hours. Metabolomics analysis followed resulting in many annotated metabolites. Intensity profiles gives insight into gastrointestinal functions.
Institute
University of California, Davis
Last NameFolz
First NameJacob
Address451 Health Science Drive
Emailjfolz@ucdavis.edu
Phone7155636311
Submit Date2021-05-17
Total Subjects1
Num Males1
Raw Data AvailableYes
Raw Data File Type(s)mzML
Analysis Type DetailLC-MS
Release Date2021-06-01
Release Version1
Jacob Folz Jacob Folz
https://dx.doi.org/10.21228/M8M68K
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:


Project:

Project ID:PR001138
Project DOI:doi: 10.21228/M8M68K
Project Title:Metabolomics Analysis of Time-Series Gastrointestinal Lumen Samples
Project Type:Exploratory
Project Summary:Samples were retrieved from a human small intestine samples over 8 hours. Metabolomics analysis followed resulting in many annotated metabolites. Intensity profiles gives insight into gastrointestinal functions.
Institute:University of California, Davis
Last Name:Folz
First Name:Jacob
Address:451 Health Science Drive
Email:jfolz@ucdavis.edu
Phone:7155636311

Subject:

Subject ID:SU001871
Subject Type:Human
Subject Species:Homo sapiens
Taxonomy ID:9606

Factors:

Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Factor
SA167125QC_01QC
SA167126QC_03QC
SA167127QC_02QC
SA167128QC_04QC
SA167129Sa_01Time point 1
SA167130Sa_10Time point 10
SA167131Sa_11Time point 11
SA167132Sa_12Time point 12
SA167133Sa_13Time point 13
SA167134Sa_14Time point 14
SA167135Sa_15Time point 15
SA167136Sa_16Time point 16
SA167137Sa_17Time point 17
SA167138Sa_18Time point 18
SA167139Sa_19Time point 19
SA167140Sa_02Time point 2
SA167141Sa_20Time point 20
SA167142Sa_03Time point 3
SA167143Sa_04Time point 4
SA167144Sa_05Time point 5
SA167145Sa_06Time point 6
SA167146Sa_07Time point 7
SA167147Sa_08Time point 8
SA167148Sa_09Time point 9
Showing results 1 to 24 of 24

Collection:

Collection ID:CO001864
Collection Summary:Samples were retrieved from the lumen of the jejunum of a human subject over 8 hours collected at approximately 30 minute intervals.
Sample Type:Jejunum

Treatment:

Treatment ID:TR001884
Treatment Summary:Diet and acetaminophen consumption were recorded throughout the collection period.

Sample Preparation:

Sampleprep ID:SP001877
Sampleprep Summary:20 uL of jejunum supernatant was extracted using a biphasic liquid liquid extraction for HILIC and CSH LC-MS/MS analysis as in doi: 10.3390/metabo9050101

Combined analysis:

Analysis ID AN002911 AN002912 AN002913 AN002914
Analysis type MS MS MS MS
Chromatography type HILIC HILIC Reversed phase Reversed phase
Chromatography system Thermo Vanquish Thermo Vanquish Thermo Vanquish Thermo Vanquish
Column Waters Acquity BEH Amide (150 x 2.1mm, 1.7um) Waters Acquity BEH Amide (150 x 2.1mm, 1.7um) Waters Acquity CSH C18 (100 x 2.1mm, 1.7um) Waters Acquity CSH C18 (100 x 2.1mm, 1.7um)
MS Type ESI ESI ESI ESI
MS instrument type Orbitrap Orbitrap Orbitrap Orbitrap
MS instrument name Thermo Q Exactive Plus Orbitrap Thermo Q Exactive Plus Orbitrap Thermo Q Exactive Plus Orbitrap Thermo Q Exactive Plus Orbitrap
Ion Mode POSITIVE NEGATIVE POSITIVE NEGATIVE
Units Peak Height Intensity Peak Height Intensity Peak Height Intensity Peak Height Intensity

Chromatography:

Chromatography ID:CH002157
Chromatography Summary:HILIC
Instrument Name:Thermo Vanquish
Column Name:Waters Acquity BEH Amide (150 x 2.1mm, 1.7um)
Column Temperature:45
Flow Gradient:The gradient started at 100% B, was held at 100% B from 0-2 minutes, decreased to 70% B between 2-7.7 minutes, decreased to 40% between 7.7 and 9.5 minutes, was held at 40% B from 9.5-12.75 minutes, returned to 100% B between 12.75-12.85 minutes, and was held at 100% B from 12.85-17 minutes.
Flow Rate:0.4 ml/min
Sample Injection:3 uL
Solvent A:water + 0.1% formic acid and 10 mM ammonium formate
Solvent B:95:5 acetonitrile/water + 0.1% formic acid and 10 mM ammonium formate
Chromatography Type:HILIC
  
Chromatography ID:CH002158
Chromatography Summary:CSH
Instrument Name:Thermo Vanquish
Column Name:Waters Acquity CSH C18 (100 x 2.1mm, 1.7um)
Column Temperature:65
Flow Gradient:The LC gradient started at 15% B, increased to 30% B from 0-2 minutes, increased to 48% B from 2-2.5 minutes, increased to 82% B from 2.5-11 minutes, increased to 99% B from 11-11.5 minutes, held at 99% B from 11.5-12 minutes, returned to 15% B from 12-12.1 minutes and held at 15% B from 12.1-15 minutes.
Flow Rate:0.6 ml/min
Sample Injection:4 uL
Solvent A:6:4 acetonitrile/ water; 10mM ammonium formate and 0.1% formic acid for positive mode ionization, and 10mM ammonium acetate for negative mode ionization.
Solvent B:9:1 isopropanol acetonitrile (v/v); 10mM ammonium formate and 0.1% formic acid for positive mode ionization, and 10mM ammonium acetate for negative mode ionization.
Chromatography Type:Reversed phase

MS:

MS ID:MS002703
Analysis ID:AN002911
Instrument Name:Thermo Q Exactive Plus Orbitrap
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling.
Ion Mode:POSITIVE
  
MS ID:MS002704
Analysis ID:AN002912
Instrument Name:Thermo Q Exactive Plus Orbitrap
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling.
Ion Mode:NEGATIVE
  
MS ID:MS002705
Analysis ID:AN002913
Instrument Name:Thermo Q Exactive Plus Orbitrap
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling.
Ion Mode:POSITIVE
  
MS ID:MS002706
Analysis ID:AN002914
Instrument Name:Thermo Q Exactive Plus Orbitrap
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS/MS data was processed using open source software MS-DIAL (version 4.24) which performed peak picking, deisotoping, automated peak annotation, alignment and gap filling.
Ion Mode:NEGATIVE
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