Metabolomics Structure Database

 
MW REGNO: 43237
Common Name:Cytarabine
Systematic Name:4-amino-1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,2-dihydropyrimidin-2-one
RefMet Name:Cytarabine
Synonyms: [PubChem Synonyms]
Exact Mass:
243.0855 (neutral)    Calculate m/z:
Formula:C9H13N3O5
InChIKey:UHDGCWIWMRVCDJ-CCXZUQQUSA-N
ClassyFire superclass:Nucleosides, nucleotides, and analogues [C0000289]
ClassyFire class:Pyrimidine nucleosides [C0000480]
ClassyFire subclass:Pyrimidine nucleosides [C0000480]
ClassyFire direct parent:Aromatic heteromonocyclic compounds
MoNA MS spectra:View MS spectra
NP-MRD NMR spectra:View NMR spectra
SMILES:c1cn([C@H]2[C@H]([C@@H]([C@@H](CO)O2)O)O)c(=O)nc1N
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:6253
CHEBI ID:28680
HMDB ID:HMDB0015122
KEGG ID:C02961
Chemspider ID:6017
NP-MRD ID(NMR):NP0000033
EPA CompTox DB:DTXCID80196738

Calculated physicochemical properties (?):

Heavy Atoms: 17  
Rings: 2  
Aromatic Rings: 1  
Rotatable Bonds: 2  
van der Waals Molecular volume: 197.67 Å3 molecule-1  
Toplogical Polar Sufrace Area: 132.90 Å2 molecule-1  
Hydrogen Bond Donors: 4  
Hydrogen Bond Acceptors: 7  
logP: -0.52  
Molar Refractivity: 58.05  
Fraction sp3 Carbons: 0.56  
sp3 Carbons: 5  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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