Data for Metabolomics analysis of multiple metabolic functions in the YjgF/YER057c/UK114 (Rid) protein family GCMS (part 2) (Study ST000118)
(Analysis AN000199)Values for each metabolite have been scaled by dividing by the mean across all factors Run Hierarchial cluster analysis on this study | Run Heatmap cluster analysis on this studyMetabolite | F1 | F2 | F3 | F4 | F5 |
---|---|---|---|---|---|
1,5-anhydroglucitol | 0.5536 | 0.5039 | 1.3121 | 1.4155 | 1.1405 |
1-monopalmitin | 1.0562 | 1.2206 | 0.9187 | 0.8399 | 0.9739 |
1-monostearin | 1.2099 | 1.0158 | 0.9777 | 0.9568 | 0.8748 |
2,5-dihydroxypyrazine NIST | 1.0487 | 1.3601 | 0.9608 | 0.6152 | 1.0232 |
2-hydroxybutanoic acid | 1.4706 | 1.5798 | 0.5728 | 1.0601 | 0.3951 |
2-hydroxyglutaric acid | 0.3494 | 0.3369 | 3.0718 | 0.8286 | 0.3049 |
2-isopropylmalic acid | 0.4737 | 0.7258 | 2.2089 | 1.2380 | 0.2659 |
3,6-anhydro-D-galactose | 0.9796 | 1.3078 | 1.1190 | 0.7891 | 0.8010 |
3-hydroxypalmitic acid | 1.6834 | 2.3367 | 0.3981 | 0.3575 | 0.3383 |
3-phosphoglycerate | 0.9347 | 0.9877 | 1.0607 | 1.0984 | 0.9076 |
4-aminobutyric acid | 2.7813 | 2.4820 | 0.0048 | 0.0232 | 0.0057 |
4-hydroxybenzoate | 1.5083 | 1.8019 | 0.4724 | 0.9665 | 0.3357 |
4-hydroxyphenylacetic acid | 1.1657 | 0.8140 | 1.1883 | 1.2061 | 0.6536 |
6-deoxyglucose | 1.2236 | 1.1397 | 0.9184 | 0.8921 | 0.8634 |
adenine | 0.9050 | 1.3138 | 0.7656 | 1.2369 | 0.7628 |
adenosine | 1.0085 | 1.2692 | 0.8584 | 1.1889 | 0.6764 |
adenosine-5-monophosphate | 1.2098 | 1.3021 | 0.9369 | 0.8497 | 0.7365 |
alanine | 0.5867 | 0.5444 | 1.0136 | 1.2837 | 1.5027 |
alanine-alanine | 2.1433 | 1.9816 | 0.2772 | 0.3671 | 0.4215 |
aminomalonate | 0.9320 | 0.7036 | 0.9729 | 1.7769 | 0.6033 |
arachidic acid | 1.0307 | 1.3441 | 0.8832 | 0.8302 | 0.9169 |
aspartic acid | 1.1332 | 0.9903 | 0.5820 | 0.9781 | 1.3386 |
benzoic acid | 1.2833 | 1.0690 | 0.9764 | 0.9662 | 0.7523 |
benzylalcohol | 0.8618 | 0.9039 | 1.0792 | 1.2837 | 0.8484 |
beta-alanine | 0.8636 | 0.9950 | 0.9119 | 1.2680 | 0.9388 |
bisphosphoglycerol NIST | 1.0410 | 1.1970 | 0.9796 | 0.8105 | 0.9787 |
butyrolactam NIST | 2.6875 | 2.4462 | 0.0499 | 0.0575 | 0.0402 |
capric acid | 1.2369 | 0.9871 | 0.7840 | 1.0471 | 0.9844 |
citramalic acid | 1.4782 | 2.3309 | 0.3991 | 0.5701 | 0.3015 |
citric acid | 2.6189 | 1.3627 | 0.4627 | 0.3153 | 0.5102 |
cyclohexylamine | 1.1784 | 0.6080 | 0.9622 | 1.4672 | 0.8138 |
cysteine | 0.3450 | 0.2601 | 0.5924 | 3.4597 | 0.2338 |
cysteine-glycine | 1.8403 | 2.4228 | 0.3415 | 0.1988 | 0.3366 |
cytidine-5-monophosphate | 0.8800 | 0.7718 | 1.0891 | 1.3271 | 0.9119 |
diacetone alcohol NIST | 1.0476 | 1.0522 | 0.9874 | 1.0447 | 0.8760 |
dodecanoic acid, isopropanol ester NIST | 1.6482 | 0.8248 | 1.0504 | 0.9006 | 0.6840 |
ethanolamine | 0.6029 | 0.6599 | 1.1020 | 1.1034 | 1.4656 |
ethanol phosphate NIST | 0.5311 | 0.4354 | 1.1029 | 1.5569 | 1.2955 |
ethylsuccinate NIST | 1.2681 | 1.8973 | 0.7250 | 0.6133 | 0.5410 |
fructose | 1.8607 | 2.3376 | 0.1761 | 0.5733 | 0.1958 |
fructose-1-phosphate | 0.5469 | 0.4918 | 1.2481 | 1.3961 | 1.2415 |
fructose-6-phosphate | 0.6369 | 0.9341 | 1.1221 | 1.4127 | 0.8338 |
fumaric acid | 1.2157 | 1.1546 | 1.0474 | 0.8725 | 0.7458 |
galactose-6-phosphate | 0.6825 | 1.0287 | 1.6312 | 0.6128 | 0.9919 |
gamma-aminobutyric acid | 2.7826 | 2.4198 | 0.0336 | 0.0336 | 0.0275 |
gluconic acid | 0.7393 | 0.7752 | 1.1825 | 1.5856 | 0.6739 |
glucose | 0.9330 | 0.8840 | 1.2047 | 1.4560 | 0.5112 |
glucose-1-phosphate | 2.2690 | 1.9926 | 0.3276 | 0.4053 | 0.2170 |
glucose-6-phosphate | 0.5697 | 0.6587 | 1.4109 | 1.4455 | 0.8435 |
glutamic acid | 0.8792 | 0.4191 | 0.9373 | 1.3998 | 1.3446 |
glutamine | 2.3185 | 1.4217 | 0.1069 | 0.1168 | 1.2558 |
glutathione | 0.7385 | 2.0168 | 0.8630 | 0.4835 | 0.8545 |
glyceric acid | 0.2154 | 0.1644 | 1.2413 | 2.0194 | 1.2287 |
glycerol-alpha-phosphate | 0.9279 | 0.8402 | 1.0530 | 1.2946 | 0.8722 |
glycine | 0.5815 | 0.5248 | 1.0612 | 2.2896 | 0.4731 |
glycolic acid | 0.9368 | 0.8129 | 1.2207 | 1.0691 | 0.9499 |
guanine | 0.0649 | 0.0541 | 1.2423 | 1.4193 | 2.0635 |
guanosine | 0.1654 | 0.1261 | 1.2559 | 1.1129 | 2.2007 |
heptadecanoic acid | 1.1541 | 1.1738 | 0.9851 | 0.8998 | 0.8128 |
hexose | 1.2190 | 1.1998 | 1.0139 | 0.8759 | 0.7279 |
hexose-6-phosphate | 0.8606 | 0.7683 | 1.2178 | 1.3256 | 0.8044 |
homoserine | 1.6891 | 1.5978 | 0.5585 | 0.6159 | 0.6536 |
hydroxycarbamate NIST | 1.2618 | 0.8904 | 1.0281 | 0.9949 | 0.8684 |
hydroxylamine | 1.0122 | 0.7807 | 1.0505 | 1.2376 | 0.9211 |
hypoxanthine | 0.1871 | 0.2560 | 1.2865 | 1.6819 | 1.4530 |
inosine | 0.2540 | 0.3222 | 1.3219 | 1.5258 | 1.4517 |
inosine 5^-monophosphate | 0.4022 | 0.2582 | 2.3010 | 1.5771 | 0.3619 |
isoleucine | 0.3609 | 0.5031 | 1.5949 | 1.7204 | 0.7142 |
lactic acid | 0.3570 | 0.3620 | 2.7005 | 0.8600 | 0.6133 |
lauric acid | 1.7640 | 2.2568 | 0.3202 | 0.3628 | 0.4235 |
leucine | 1.1505 | 1.1165 | 0.8823 | 1.2643 | 0.6114 |
levoglucosan | 1.9608 | 1.9958 | 0.4548 | 0.4482 | 0.3005 |
lysine | 1.8564 | 2.3004 | 0.2633 | 0.3360 | 0.3866 |
malic acid | 1.3756 | 1.5156 | 0.7875 | 0.8600 | 0.5239 |
maltose | 1.1077 | 1.3871 | 0.6849 | 1.3460 | 0.4922 |
maltotriose | 1.4120 | 1.4927 | 0.5517 | 1.2320 | 0.3803 |
mannose | 1.5407 | 1.3362 | 0.6485 | 0.9343 | 0.6304 |
mannose-6-phosphate NIST | 0.5520 | 0.6604 | 1.2468 | 1.1015 | 1.3646 |
methionine | 0.8551 | 0.6136 | 1.0649 | 1.5468 | 0.8955 |
methyl O-D-galactopyranoside | 0.7105 | 0.7419 | 1.1962 | 1.1133 | 1.1898 |
myristic acid | 1.0200 | 1.1344 | 1.0508 | 0.9444 | 0.8537 |
N-acetylaspartic acid | 2.1137 | 2.9732 | 0.0253 | 0.0329 | 0.0405 |
N-carbamoylaspartate | 3.0092 | 2.0138 | 0.0969 | 0.1168 | 0.0981 |
nicotinamide | 1.7068 | 1.2853 | 0.6487 | 0.8748 | 0.6022 |
nicotinic acid | 0.1022 | 0.0877 | 1.4373 | 1.7991 | 1.4241 |
N-methylalanine | 1.8319 | 2.4527 | 0.2495 | 0.4096 | 0.1949 |
norleucine | 1.9468 | 2.8476 | 0.0927 | 0.0755 | 0.1952 |
norvaline | 2.4035 | 2.7824 | 0.0122 | 0.0134 | 0.0225 |
O-acetylserine | 1.5103 | 0.6567 | 1.4601 | 1.1774 | 0.2807 |
octanol NIST | 1.0483 | 0.8544 | 0.9709 | 1.2144 | 0.9200 |
oleic acid | 1.1352 | 1.0568 | 0.8980 | 0.8505 | 1.0820 |
ornithine 4tms | 1.8964 | 1.7670 | 0.5262 | 0.5044 | 0.4553 |
orotic acid | 2.4550 | 2.6692 | 0.0363 | 0.0602 | 0.0218 |
oxalic acid | 1.3131 | 0.7591 | 1.0921 | 1.0142 | 0.8737 |
oxoproline | 1.0665 | 1.1017 | 0.8737 | 1.0120 | 0.9572 |
palmitic acid | 1.0037 | 0.9929 | 1.0509 | 1.0407 | 0.9123 |
palmitoleic acid | 0.4898 | 0.4681 | 1.3032 | 1.3340 | 1.3198 |
pantothenic acid | 2.4511 | 1.5198 | 0.4182 | 0.4817 | 0.3709 |
p-cresol | 1.0047 | 0.9603 | 1.0079 | 1.3069 | 0.7210 |
pelargonic acid | 1.3563 | 0.7368 | 0.7998 | 0.9683 | 1.1982 |
pentadecanoic acid | 1.0456 | 1.1129 | 0.9960 | 1.0541 | 0.7990 |
phenol | 0.9847 | 0.9877 | 1.0420 | 1.0947 | 0.8884 |
phenylacetic acid | 1.0400 | 1.0499 | 0.9443 | 1.0810 | 0.8915 |
phenylalanine | 1.0998 | 1.1602 | 0.9478 | 1.0309 | 0.7780 |
phosphate | 0.9891 | 0.9285 | 1.0990 | 1.0919 | 0.8898 |
phosphoethanolamine | 0.9511 | 1.1376 | 1.1728 | 0.7968 | 0.9336 |
proline | 1.2164 | 0.9647 | 0.8502 | 1.0087 | 0.9961 |
propane-1,3-diol NIST | 1.0512 | 0.9408 | 1.0419 | 1.0912 | 0.8835 |
putrescine | 1.2740 | 1.4937 | 1.0523 | 0.5658 | 0.6598 |
pyrophosphate | 1.6378 | 1.3952 | 0.7221 | 0.6925 | 0.6588 |
pyruvic acid | 2.0345 | 0.7725 | 0.7294 | 1.2862 | 0.3498 |
ribose | 0.1186 | 0.1836 | 1.4220 | 1.9012 | 1.2278 |
ribose-5-phosphate | 0.3669 | 0.3424 | 1.6272 | 1.9253 | 0.6327 |
serine | 1.1914 | 0.6254 | 1.0865 | 1.4608 | 0.6677 |
shikimic acid | 0.7510 | 0.7950 | 1.0951 | 0.7958 | 1.5217 |
spermidine | 1.1715 | 0.5243 | 1.5454 | 0.7077 | 1.0796 |
stearic acid | 1.0455 | 1.1087 | 1.0001 | 0.9780 | 0.8752 |
succinic acid | 1.6500 | 1.5976 | 0.7199 | 0.7121 | 0.4287 |
sucrose | 0.9184 | 0.8085 | 1.0653 | 1.1162 | 1.0780 |
threonine | 0.8321 | 0.7695 | 1.2154 | 1.3192 | 0.8357 |
thymidine | 0.5768 | 1.1998 | 1.0905 | 0.9477 | 1.1147 |
thymidine-5-phosphate | 2.0454 | 2.1014 | 0.3804 | 0.3269 | 0.3201 |
thymine | 1.7493 | 1.7829 | 0.5339 | 0.5949 | 0.4639 |
tryptophan | 0.5695 | 0.6752 | 1.4769 | 1.5857 | 0.6210 |
tyrosine | 1.2834 | 1.3284 | 0.7777 | 0.7693 | 0.8885 |
UDP-glucuronic acid | 0.9670 | 0.9712 | 1.2566 | 0.8600 | 0.9396 |
UDP-N-acetylglucosamine | 2.3732 | 2.0167 | 0.3166 | 0.2996 | 0.2228 |
uracil | 0.8011 | 0.8957 | 0.9915 | 1.3549 | 0.9237 |
valine | 0.0949 | 0.1014 | 1.5144 | 1.3031 | 1.8353 |
xanthine | 1.9807 | 2.3303 | 0.3026 | 0.4051 | 0.1446 |
xylose | 0.9983 | 0.9860 | 1.2160 | 1.0414 | 0.7580 |
xylulose NIST | 0.3425 | 0.4419 | 1.3620 | 1.5798 | 1.1642 |
Factors:
F1 | Strain:E. coli | Genotype:WT E. coli |
F2 | Strain:E. coli | Genotype:yjeF KO |
F3 | Strain:S. enterica | Genotype:single RidA KO |
F4 | Strain:S. enterica | Genotype:triple RidA KO |
F5 | Strain:S. enterica | Genotype:WT S. enterica |