#METABOLOMICS WORKBENCH schrodm_20230112_103651 DATATRACK_ID:3688 STUDY_ID:ST002441 ANALYSIS_ID:AN003978 PROJECT_ID:PR001572
VERSION             	1
CREATED_ON             	January 13, 2023, 7:27 am
#PROJECT
PR:PROJECT_TITLE                 	Impacts of interactions between environmental chemical exposures and diet on gut
PR:PROJECT_TITLE                 	microbiota and microbiota-derived metabolites in mothers and children
PR:PROJECT_TYPE                  	C18 Reversed-Phase Broad Spectrum Metabolomics
PR:PROJECT_SUMMARY               	This project is funded by the NIH Environmental influences on Child Health
PR:PROJECT_SUMMARY               	Outcomes (ECHO) OIF program, and uses data from two cohorts: MAAP and MARCH.
PR:PROJECT_SUMMARY               	This project will examine associations with PFAS exposures and gut microbiota
PR:PROJECT_SUMMARY               	form and function in mothers and children over time. Untargeted metabolomics
PR:PROJECT_SUMMARY               	will be used as a means to assess changes in microbiota-derived metabolites.
PR:INSTITUTE                     	NC HHEAR Hub
PR:DEPARTMENT                    	Untargeted Analysis
PR:LABORATORY                    	Sumner Lab
PR:LAST_NAME                     	Li
PR:FIRST_NAME                    	Yuanyuan
PR:ADDRESS                       	Nutrition Research Institute, UNC-CH, 500 Laureate Way, Kannapolis, NC 28081
PR:EMAIL                         	yuanyli4@unc.edu
PR:PHONE                         	984-377-0693
PR:FUNDING_SOURCE                	This research was supported by the Environmental influences on Child Health
PR:FUNDING_SOURCE                	Outcomes (ECHO) OIF program, Office of The Director, National Institutes of
PR:FUNDING_SOURCE                	Health. The content is solely the responsibility of the authors and does not
PR:FUNDING_SOURCE                	necessarily represent the official views of the National Institutes of Health.
PR:FUNDING_SOURCE                	MARCH is an ECHO cohort which is supported by the following ECHO Program
PR:FUNDING_SOURCE                	Collaborators: ECHO Coordinating Center: Duke Clinical Research Institute,
PR:FUNDING_SOURCE                	Durham, North Carolina: Smith PB, Newby KL, Benjamin DK; U2C OD023375; ECHO Data
PR:FUNDING_SOURCE                	Analysis Center: Johns Hopkins University Bloomberg School of Public Health,
PR:FUNDING_SOURCE                	Baltimore, Maryland: Jacobson LP; Research Triangle Institute, Durham, North
PR:FUNDING_SOURCE                	Carolina: Catellier.D  U24 OD023382; North Carolina Human Health Exposure
PR:FUNDING_SOURCE                	Analysis Resource Hub: Research Triangle Institute: Fennell T, University of
PR:FUNDING_SOURCE                	North Carolina at Chapel Hill: Sumner S, University of North Carolina at
PR:FUNDING_SOURCE                	Charlotte: Du X; U2C ES030857; Human Health Exposure Analysis Resource
PR:FUNDING_SOURCE                	Coordinating Center: Westat, Inc., Rockville, Maryland: O’Brien B; U24
PR:FUNDING_SOURCE                	ES026539
#STUDY
ST:STUDY_TITLE                   	Impacts of interactions between environmental chemical exposures and diet on gut
ST:STUDY_TITLE                   	microbiota and microbiota-derived metabolites in mothers and children (MARCH
ST:STUDY_TITLE                   	Cohort)
ST:STUDY_TYPE                    	Prospective Cohort Study
ST:STUDY_SUMMARY                 	MARCH is a prospective population based pregnancy cohort that recruited pregnant
ST:STUDY_SUMMARY                 	participants from 2017-2023 from 11 sites within Michigan. Women over 18 years
ST:STUDY_SUMMARY                 	of age were recruited at first prenatal visit and had 3 data collection points
ST:STUDY_SUMMARY                 	focused around each trimester of pregnancy. Blood, urine, and questionnaire data
ST:STUDY_SUMMARY                 	were collected at each prenatal visit. At birth placenta was collected and after
ST:STUDY_SUMMARY                 	birth, infants were assessed at 3 months, 9 months, and yearly. For more
ST:STUDY_SUMMARY                 	information on MARCH please contact Jean Kerver; kerverje@msu.edu This research
ST:STUDY_SUMMARY                 	was supported by the Environmental influences on Child Health Outcomes (ECHO)
ST:STUDY_SUMMARY                 	OIF program, Office of The Director, National Institutes of Health. The content
ST:STUDY_SUMMARY                 	is solely the responsibility of the authors and does not necessarily represent
ST:STUDY_SUMMARY                 	the official views of the National Institutes of Health. MARCH is an ECHO cohort
ST:STUDY_SUMMARY                 	which is supported by the following ECHO Program Collaborators: ECHO
ST:STUDY_SUMMARY                 	Coordinating Center: Duke Clinical Research Institute, Durham, North Carolina:
ST:STUDY_SUMMARY                 	Smith PB, Newby KL, Benjamin DK; U2C OD023375 ECHO Data Analysis Center: Johns
ST:STUDY_SUMMARY                 	Hopkins University Bloomberg School of Public Health, Baltimore, Maryland:
ST:STUDY_SUMMARY                 	Jacobson LP; Research Triangle Institute, Durham, North Carolina: Catellier.D 
ST:STUDY_SUMMARY                 	U24 OD023382 North Carolina Human Health Exposure Analysis Resource Hub:
ST:STUDY_SUMMARY                 	Research Triangle Institute: Fennell T, University of North Carolina at Chapel
ST:STUDY_SUMMARY                 	Hill: Sumner S, University of North Carolina at Charlotte: Du X; U2C ES030857
ST:STUDY_SUMMARY                 	Human Health Exposure Analysis Resource Coordinating Center: Westat, Inc.,
ST:STUDY_SUMMARY                 	Rockville, Maryland: O’Brien B; U24 ES026539
ST:INSTITUTE                     	Wayne State University
ST:DEPARTMENT                    	Pharmacology
ST:LAST_NAME                     	Petriello
ST:FIRST_NAME                    	Michael
ST:ADDRESS                       	6135 Woodward Ave, Detroit, MI 48202
ST:EMAIL                         	michael.petriello@wayne.edu
ST:PHONE                         	313-577-1089
ST:TOTAL_SUBJECTS                	65
ST:STUDY_COMMENTS                	ECHO Project EC0549, HHEAR Project E020-0012
#SUBJECT
SU:SUBJECT_TYPE                  	Human
SU:SUBJECT_SPECIES               	Homo sapiens
SU:TAXONOMY_ID                   	9606
#SUBJECT_SAMPLE_FACTORS:         	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_1	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_1
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_2	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_2
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_3	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_3
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_4	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_4
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_5	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_5
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_6	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_6
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_HHEAR_7	Sample Type:HHEAR Pool	RAW_FILE_NAME=MARCH_HHEAR_7
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_NIST_1	Sample Type:NIST Pool	RAW_FILE_NAME=MARCH_NIST_1
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_NIST_2	Sample Type:NIST Pool	RAW_FILE_NAME=MARCH_NIST_2
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_NIST_3	Sample Type:NIST Pool	RAW_FILE_NAME=MARCH_NIST_3
SUBJECT_SAMPLE_FACTORS           	EO-37YQ9-P-00-12902	MARCH_S_1	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_1
SUBJECT_SAMPLE_FACTORS           	EO-38729-P-00-12902	MARCH_S_2	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_2
SUBJECT_SAMPLE_FACTORS           	EO-38612-P-00-12902	MARCH_S_3	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_3
SUBJECT_SAMPLE_FACTORS           	EO-37YA4-P-00-12902	MARCH_S_4	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_4
SUBJECT_SAMPLE_FACTORS           	EO-38BP2-P-00-12902	MARCH_S_5	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_5
SUBJECT_SAMPLE_FACTORS           	EO-385Y5-P-00-12902	MARCH_S_6	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_6
SUBJECT_SAMPLE_FACTORS           	EO-37XJ5-P-00-12902	MARCH_S_7	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_7
SUBJECT_SAMPLE_FACTORS           	EO-389Q9-P-00-12902	MARCH_S_8	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_8
SUBJECT_SAMPLE_FACTORS           	EO-383F9-P-00-12902	MARCH_S_9	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_9
SUBJECT_SAMPLE_FACTORS           	EO-37YM8-P-00-12902	MARCH_S_10	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_10
SUBJECT_SAMPLE_FACTORS           	EO-38EH7-P-00-12902	MARCH_S_11	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_11
SUBJECT_SAMPLE_FACTORS           	EO-38430-P-00-12902	MARCH_S_12	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_12
SUBJECT_SAMPLE_FACTORS           	EO-38BQ0-P-00-12902	MARCH_S_13	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_13
SUBJECT_SAMPLE_FACTORS           	EO-38406-P-00-12902	MARCH_S_14	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_14
SUBJECT_SAMPLE_FACTORS           	EO-38984-P-00-12902	MARCH_S_15	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_15
SUBJECT_SAMPLE_FACTORS           	EO-382F0-P-00-12902	MARCH_S_16	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_16
SUBJECT_SAMPLE_FACTORS           	EO-38885-P-00-12902	MARCH_S_17	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_17
SUBJECT_SAMPLE_FACTORS           	EO-38182-P-00-12902	MARCH_S_18	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_18
SUBJECT_SAMPLE_FACTORS           	EO-380N4-P-00-12902	MARCH_S_19	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_19
SUBJECT_SAMPLE_FACTORS           	EO-387X5-P-00-12902	MARCH_S_20	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_20
SUBJECT_SAMPLE_FACTORS           	EO-387L2-P-00-12902	MARCH_S_21	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_21
SUBJECT_SAMPLE_FACTORS           	EO-380P0-P-00-12902	MARCH_S_22	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_22
SUBJECT_SAMPLE_FACTORS           	EO-384N0-P-00-12902	MARCH_S_23	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_23
SUBJECT_SAMPLE_FACTORS           	EO-37ZE4-P-00-12902	MARCH_S_24	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_24
SUBJECT_SAMPLE_FACTORS           	EO-38018-P-00-12902	MARCH_S_25	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_25
SUBJECT_SAMPLE_FACTORS           	EO-385L4-P-00-12902	MARCH_S_26	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_26
SUBJECT_SAMPLE_FACTORS           	EO-38CX3-P-00-12902	MARCH_S_27	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_27
SUBJECT_SAMPLE_FACTORS           	EO-383B8-P-00-12902	MARCH_S_28	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_28
SUBJECT_SAMPLE_FACTORS           	EO-38EJ2-P-00-12902	MARCH_S_29	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_29
SUBJECT_SAMPLE_FACTORS           	EO-38BM9-P-00-12902	MARCH_S_30	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_30
SUBJECT_SAMPLE_FACTORS           	EO-38356-P-00-12902	MARCH_S_31	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_31
SUBJECT_SAMPLE_FACTORS           	EO-37Z42-P-00-12902	MARCH_S_32	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_32
SUBJECT_SAMPLE_FACTORS           	EO-38CL0-P-00-12902	MARCH_S_33	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_33
SUBJECT_SAMPLE_FACTORS           	EO-381Y9-P-00-12902	MARCH_S_34	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_34
SUBJECT_SAMPLE_FACTORS           	EO-387U2-P-00-12902	MARCH_S_35	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_35
SUBJECT_SAMPLE_FACTORS           	EO-38BD8-P-00-12902	MARCH_S_36	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_36
SUBJECT_SAMPLE_FACTORS           	EO-381R5-P-00-12902	MARCH_S_37	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_37
SUBJECT_SAMPLE_FACTORS           	EO-38BS5-P-00-12902	MARCH_S_38	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_38
SUBJECT_SAMPLE_FACTORS           	EO-38083-P-00-12902	MARCH_S_39	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_39
SUBJECT_SAMPLE_FACTORS           	EO-383Q5-P-00-12902	MARCH_S_40	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_40
SUBJECT_SAMPLE_FACTORS           	EO-38B36-P-00-12902	MARCH_S_41	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_41
SUBJECT_SAMPLE_FACTORS           	EO-37Y27-P-00-12902	MARCH_S_42	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_42
SUBJECT_SAMPLE_FACTORS           	EO-383R3-P-00-12902	MARCH_S_43	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_43
SUBJECT_SAMPLE_FACTORS           	EO-389R7-P-00-12902	MARCH_S_44	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_44
SUBJECT_SAMPLE_FACTORS           	EO-37YX3-P-00-12902	MARCH_S_45	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_45
SUBJECT_SAMPLE_FACTORS           	EO-387J6-P-00-12902	MARCH_S_46	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_46
SUBJECT_SAMPLE_FACTORS           	EO-388U1-P-00-12902	MARCH_S_47	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_47
SUBJECT_SAMPLE_FACTORS           	EO-38BF4-P-00-12902	MARCH_S_48	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_48
SUBJECT_SAMPLE_FACTORS           	EO-386Q2-P-00-12902	MARCH_S_49	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_49
SUBJECT_SAMPLE_FACTORS           	EO-386D0-P-00-12902	MARCH_S_50	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_50
SUBJECT_SAMPLE_FACTORS           	EO-38794-P-00-12902	MARCH_S_51	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_51
SUBJECT_SAMPLE_FACTORS           	EO-38075-P-00-12902	MARCH_S_52	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_52
SUBJECT_SAMPLE_FACTORS           	EO-38BX4-P-00-12902	MARCH_S_53	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_53
SUBJECT_SAMPLE_FACTORS           	EO-380M7-P-00-12902	MARCH_S_54	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_54
SUBJECT_SAMPLE_FACTORS           	EO-38A78-P-00-12902	MARCH_S_55	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_55
SUBJECT_SAMPLE_FACTORS           	EO-37XU1-P-00-12902	MARCH_S_56	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_56
SUBJECT_SAMPLE_FACTORS           	EO-382T9-P-00-12902	MARCH_S_57	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_57
SUBJECT_SAMPLE_FACTORS           	EO-38AN7-P-00-12902	MARCH_S_58	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_58
SUBJECT_SAMPLE_FACTORS           	EO-38DM7-P-00-12902	MARCH_S_59	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_59
SUBJECT_SAMPLE_FACTORS           	EO-382B9-P-00-12902	MARCH_S_60	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_60
SUBJECT_SAMPLE_FACTORS           	EO-384A9-P-00-12902	MARCH_S_61	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_61
SUBJECT_SAMPLE_FACTORS           	EO-385C4-P-00-12902	MARCH_S_62	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_62
SUBJECT_SAMPLE_FACTORS           	EO-38687-P-00-12902	MARCH_S_63	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_63
SUBJECT_SAMPLE_FACTORS           	EO-38BC1-P-00-12902	MARCH_S_64	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_64
SUBJECT_SAMPLE_FACTORS           	EO-38DQ8-P-00-12902	MARCH_S_65	Sample Type:Study Sample	RAW_FILE_NAME=MARCH_S_65
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_1	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_1
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_2	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_2
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_3	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_3
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_4	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_4
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_5	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_5
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_6	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_6
SUBJECT_SAMPLE_FACTORS           	N/A	MARCH_SP_7	Sample Type:Study Pool	RAW_FILE_NAME=MARCH_SP_7
#COLLECTION
CO:COLLECTION_SUMMARY            	MARCH is a prospective population based pregnancy cohort that recruited pregnant
CO:COLLECTION_SUMMARY            	participants from 2017-2023 from 11 sites within Michigan. Women over 18 years
CO:COLLECTION_SUMMARY            	of age were recruited at first prenatal visit and had 3 data collection points
CO:COLLECTION_SUMMARY            	focused around each trimester of pregnancy. Blood, urine, and questionnaire data
CO:COLLECTION_SUMMARY            	were collected at each prenatal visit. At birth placenta was collected and after
CO:COLLECTION_SUMMARY            	birth, infants were assessed at 3 months, 9 months, and yearly. For more
CO:COLLECTION_SUMMARY            	information on MARCH please contact Jean Kerver; kerverje@msu.edu
CO:SAMPLE_TYPE                   	Blood (plasma)
CO:STORAGE_CONDITIONS            	-80℃
#TREATMENT
TR:TREATMENT_SUMMARY             	N/A
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY            	Study samples (500 µL aliquots) were shipped from Wayne State University to the
SP:SAMPLEPREP_SUMMARY            	NC HHEAR Hub on dry ice. The NC HHEAR Hub thawed and aliquoted the study samples
SP:SAMPLEPREP_SUMMARY            	at 50 µL per aliquot. An additional 10 µL was taken from each study sample,
SP:SAMPLEPREP_SUMMARY            	mixed, and distributed at 50 µL per aliquot, which were used as QC study pools
SP:SAMPLEPREP_SUMMARY            	throughout the study. HHEAR reference plasma (50 µL each) and NIST plasma
SP:SAMPLEPREP_SUMMARY            	(1950) reference material (50 µL each) were provided by the NC HHEAR Hub. LC-MS
SP:SAMPLEPREP_SUMMARY            	grade water (50 µL) was used as blank. All samples were thawed at 4°C
SP:SAMPLEPREP_SUMMARY            	overnight before the preparation. Samples, including study samples, study pool
SP:SAMPLEPREP_SUMMARY            	samples, HHEAR reference plasma, NIST reference plasma, and blanks were mixed
SP:SAMPLEPREP_SUMMARY            	with 400 µL methanol containing 500 ng/mL tryptophan-d5 as internal standard
SP:SAMPLEPREP_SUMMARY            	and vortexed by a multiple tube vortex mixer for 2 min at 5000 rpm at room
SP:SAMPLEPREP_SUMMARY            	temperature. All samples were centrifuged at 16,000 rcf for 10 min at 4°C. The
SP:SAMPLEPREP_SUMMARY            	supernatant (350 µL) was transferred into a pre-labeled 2.0 mL Lo-bind
SP:SAMPLEPREP_SUMMARY            	Eppendorf tube, dried by a SpeedVac overnight, and stored at -80° C. For
SP:SAMPLEPREP_SUMMARY            	immediate analysis, 100 µL of water-methanol solution (95:5, v/v) was used to
SP:SAMPLEPREP_SUMMARY            	reconstitute the dried extracts. Samples were thoroughly mixed on a multiple
SP:SAMPLEPREP_SUMMARY            	tube vortex mixer for 10 min at 5000 rpm at room temperature and then
SP:SAMPLEPREP_SUMMARY            	centrifuged at 4°C for 10 min at 16,000 rcf. The supernatant was transferred to
SP:SAMPLEPREP_SUMMARY            	pre-labeled autosampler vials for data acquisition by LC-MS.
SP:PROCESSING_STORAGE_CONDITIONS 	On ice
SP:EXTRACTION_METHOD             	Vortex with methanol containing 500ng/ml tryptophan-d5 as internal standard
SP:EXTRACT_STORAGE               	-80℃
SP:SAMPLE_RESUSPENSION           	Water-Methanol (95:5, v/v)
SP:SAMPLE_SPIKING                	Tryptophan-d5 stock solution at 500 ng/mL
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE           	Reversed phase
CH:INSTRUMENT_NAME               	Thermo Vanquish
CH:COLUMN_NAME                   	Waters ACQUITY UPLC HSS T3 (100 x 2.1mm,1.8um)
CH:SOLVENT_A                     	100% water; 0.1% formic acid
CH:SOLVENT_B                     	100% methanol; 0.1% formic acid
CH:FLOW_GRADIENT                 	Time(min) Flow Rate %A %B Curve 1. 0 0.4 99.0 1.0 5 2. 1.00 0.4 99.0 1.0 5 3.
CH:FLOW_GRADIENT                 	16.00 0.4 1.0 99.0 5 4. 19.00 0.4 1.0 99.0 5 5. 19.50 0.4 99.0 1.0 5 6. 22.00
CH:FLOW_GRADIENT                 	0.4 99.0 1.0 5
CH:FLOW_RATE                     	0.4 mL/min
CH:COLUMN_TEMPERATURE            	50
CH:COLUMN_PRESSURE               	6000-10000 psi
CH:INJECTION_TEMPERATURE         	8
CH:INTERNAL_STANDARD             	Tryptophan-d5
CH:ANALYTICAL_TIME               	22 min
CH:WEAK_WASH_SOLVENT_NAME        	10:90 Methanol:Water with 0.1% FA solution
CH:STRONG_WASH_SOLVENT_NAME      	75:25 2-Propanol:Water with 0.1% FA solution
#ANALYSIS
AN:ANALYSIS_TYPE                 	MS
#MS
MS:INSTRUMENT_NAME               	Thermo Q Exactive HF-X Orbitrap
MS:INSTRUMENT_TYPE               	Orbitrap
MS:MS_TYPE                       	ESI
MS:ION_MODE                      	POSITIVE
MS:MS_COMMENTS                   	Xcalibur 4.1.31.9 for data acquisition; Progenesis QI 2.4 for data preprocessing
MS:CAPILLARY_TEMPERATURE         	320 °C
MS:CAPILLARY_VOLTAGE             	3.5 kV
MS:COLLISION_ENERGY              	20-45, ramp
MS:COLLISION_GAS                 	N2
MS:DRY_GAS_TEMP                  	400°C
MS:FRAGMENTATION_METHOD          	CID
MS:DESOLVATION_GAS_FLOW          	55
MS:MS_RESULTS_FILE               	ST002441_AN003978_Results.txt	UNITS:Peak area	Has m/z:Yes	Has RT:Yes	RT units:Minutes
#END