{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST003799","ANALYSIS_ID":"AN006245","PROJECT_ID":"PR002363","VERSION":"1","CREATED_ON":"March 18, 2025, 9:41 am"},

"PROJECT":{"PROJECT_TITLE":"Molecular fingerprint inference reveals bioactive lipids and microbial metabolites in colitis","PROJECT_SUMMARY":"Untargeted metabolomics provides a sensitive readout of small molecules in biofluids, but requires targeted approaches to resolve ~90% of features for which tandem mass spectra (MS/MS) are not collected. By training on a subset of verified metabolites and their profiles in LC-MS, we derive a probabilistic model to predict molecular fingerprints in human stool and blood samples. These predictions, which do not utilize MS/MS, were accurate for >44% (correct top ranked candidate) or >75% (correct within top 3) of test metabolites, drastically reducing the number of reference standards that would need to be to be tested. These predictions revealed markers and drivers of inflammation, including amino acid derivatives and lysophospholipids with herein demonstrated platelet-activating factor receptor (PAF-R) activity. Integration with bacterial culturomics facilitates tracking the source of inflammation-associated metabolites to their origins in the gut microbiome.","INSTITUTE":"Broad Institute of MIT and Harvard","LAST_NAME":"Avila-Pacheco","FIRST_NAME":"Julian","ADDRESS":"415 Main Street","EMAIL":"jravilap@broadinstitute.org","PHONE":"+1 (617) 714-1729"},

"STUDY":{"STUDY_TITLE":"Molecular fingerprint inference reveals bioactive lipids and microbial metabolites in colitis. Study 2.","STUDY_TYPE":"Bacterial cell cultures","STUDY_SUMMARY":"Untargeted metabolomics provides a sensitive readout of small molecules in biofluids, but requires targeted approaches to resolve ~90% of features for which tandem mass spectra (MS/MS) are not collected. By training on a subset of verified metabolites and their profiles in LC-MS, we derive a probabilistic model to predict molecular fingerprints in human stool and blood samples. These predictions, which do not utilize MS/MS, were accurate for >44% (correct top ranked candidate) or >75% (correct within top 3) of test metabolites, drastically reducing the number of reference standards that would need to be to be tested. These predictions revealed markers and drivers of inflammation, including amino acid derivatives and lysophospholipids with herein demonstrated platelet-activating factor receptor (PAF-R) activity. Integration with bacterial culturomics facilitates tracking the source of inflammation-associated metabolites to their origins in the gut microbiome.","INSTITUTE":"Broad Institute of MIT and Harvard","LAST_NAME":"Avila-Pacheco","FIRST_NAME":"Julian","ADDRESS":"415 Main Street","EMAIL":"jravilap@broadinstitute.org","PHONE":"(617) 714-1729"},

"SUBJECT":{"SUBJECT_TYPE":"Bacteria","SUBJECT_SPECIES":"Dorea longicatena","TAXONOMY_ID":"88431","GENOTYPE_STRAIN":"Flavonifractor plautii, Dorea longicatena, Turicibacter sanguinis, Clostridium bolteae, Clostridium symbiosum, Clostridium innocuum, Clostridium clostridioforme, Streptococcus parasanguinis"},
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"2","RAW_FILE_NAME(C8-POS)":"B0055_XAV_Rachele_GutBacteria_CP-CI-R2_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0055_XAV_Rachele_GutBacteria_HP-CI-R2_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0055_XAV_Rachele_GutBacteria_HN-CI-R2_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0055_XAV_Rachele_GutBacteria_CN-CI-R2_CHG_24h"}
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"2","RAW_FILE_NAME(C8-POS)":"B0060_XAV_Rachele_GutBacteria_CP-CI-R1_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0060_XAV_Rachele_GutBacteria_HP-CI-R1_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0060_XAV_Rachele_GutBacteria_HN-CI-R1_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0060_XAV_Rachele_GutBacteria_CN-CI-R1_CHG_24h"}
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{
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{
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.91","RAW_FILE_NAME(C8-POS)":"B0057_XAV_Rachele_GutBacteria_CP-CI-R1_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0057_XAV_Rachele_GutBacteria_HP-CI-R1_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0057_XAV_Rachele_GutBacteria_HN-CI-R1_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0057_XAV_Rachele_GutBacteria_CN-CI-R1_CHG_48h"}
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{
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{
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{
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{
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{
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{
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.52","RAW_FILE_NAME(C8-POS)":"B0054_XAV_Rachele_GutBacteria_CP-DL-R2_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0054_XAV_Rachele_GutBacteria_HP-DL-R2_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0054_XAV_Rachele_GutBacteria_HN-DL-R2_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0054_XAV_Rachele_GutBacteria_CN-DL-R2_CHG_48h"}
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{
"Subject ID":"-",
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},
{
"Subject ID":"-",
"Sample ID":"FP-R1_CHG_6h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.35","RAW_FILE_NAME(C8-POS)":"B0042_XAV_Rachele_GutBacteria_CP-FP-R1_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0042_XAV_Rachele_GutBacteria_HP-FP-R1_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0042_XAV_Rachele_GutBacteria_HN-FP-R1_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0042_XAV_Rachele_GutBacteria_CN-FP-R1_CHG_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_CHG_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.35","RAW_FILE_NAME(C8-POS)":"B0044_XAV_Rachele_GutBacteria_CP-FP-R3_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0044_XAV_Rachele_GutBacteria_HP-FP-R3_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0044_XAV_Rachele_GutBacteria_HN-FP-R3_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0044_XAV_Rachele_GutBacteria_CN-FP-R3_CHG_6h"}
},
{
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"Sample ID":"FP-R3_CHG_24h",
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{
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.52","RAW_FILE_NAME(C8-POS)":"B0041_XAV_Rachele_GutBacteria_CP-FP-R1_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0041_XAV_Rachele_GutBacteria_HP-FP-R1_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0041_XAV_Rachele_GutBacteria_HN-FP-R1_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0041_XAV_Rachele_GutBacteria_CN-FP-R1_CHG_24h"}
},
{
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.51","RAW_FILE_NAME(C8-POS)":"B0045_XAV_Rachele_GutBacteria_CP-FP-R2_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0045_XAV_Rachele_GutBacteria_HP-FP-R2_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0045_XAV_Rachele_GutBacteria_HN-FP-R2_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0045_XAV_Rachele_GutBacteria_CN-FP-R2_CHG_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"CHG","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.87","RAW_FILE_NAME(C8-POS)":"B0037_XAV_Rachele_GutBacteria_CP-FP-R3_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0037_XAV_Rachele_GutBacteria_HP-FP-R3_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0037_XAV_Rachele_GutBacteria_HN-FP-R3_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0037_XAV_Rachele_GutBacteria_CN-FP-R3_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"CHG","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.86","RAW_FILE_NAME(C8-POS)":"B0040_XAV_Rachele_GutBacteria_CP-FP-R2_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0040_XAV_Rachele_GutBacteria_HP-FP-R2_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0040_XAV_Rachele_GutBacteria_HN-FP-R2_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0040_XAV_Rachele_GutBacteria_CN-FP-R2_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.86","RAW_FILE_NAME(C8-POS)":"B0043_XAV_Rachele_GutBacteria_CP-FP-R1_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0043_XAV_Rachele_GutBacteria_HP-FP-R1_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0043_XAV_Rachele_GutBacteria_HN-FP-R1_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0043_XAV_Rachele_GutBacteria_CN-FP-R1_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_CHG_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"CHG","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.57","RAW_FILE_NAME(C8-POS)":"B0002_XAV_Rachele_GutBacteria_CP-SP-R3_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0002_XAV_Rachele_GutBacteria_HP-SP-R3_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0002_XAV_Rachele_GutBacteria_HN-SP-R3_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0002_XAV_Rachele_GutBacteria_CN-SP-R3_CHG_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_CHG_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.56","RAW_FILE_NAME(C8-POS)":"B0005_XAV_Rachele_GutBacteria_CP-SP-R2_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0005_XAV_Rachele_GutBacteria_HP-SP-R2_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0005_XAV_Rachele_GutBacteria_HN-SP-R2_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0005_XAV_Rachele_GutBacteria_CN-SP-R2_CHG_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R1_CHG_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.56","RAW_FILE_NAME(C8-POS)":"B0009_XAV_Rachele_GutBacteria_CP-SP-R1_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0009_XAV_Rachele_GutBacteria_HP-SP-R1_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0009_XAV_Rachele_GutBacteria_HN-SP-R1_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0009_XAV_Rachele_GutBacteria_CN-SP-R1_CHG_6h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.55","RAW_FILE_NAME(C8-POS)":"B0001_XAV_Rachele_GutBacteria_CP-SP-R1_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0001_XAV_Rachele_GutBacteria_HP-SP-R1_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0001_XAV_Rachele_GutBacteria_HN-SP-R1_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0001_XAV_Rachele_GutBacteria_CN-SP-R1_CHG_24h"}
},
{
"Subject ID":"-",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.55","RAW_FILE_NAME(C8-POS)":"B0003_XAV_Rachele_GutBacteria_CP-SP-R3_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0003_XAV_Rachele_GutBacteria_HP-SP-R3_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0003_XAV_Rachele_GutBacteria_HN-SP-R3_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0003_XAV_Rachele_GutBacteria_CN-SP-R3_CHG_24h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"CHG","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.55","RAW_FILE_NAME(C8-POS)":"B0004_XAV_Rachele_GutBacteria_CP-SP-R2_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0004_XAV_Rachele_GutBacteria_HP-SP-R2_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0004_XAV_Rachele_GutBacteria_HN-SP-R2_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0004_XAV_Rachele_GutBacteria_CN-SP-R2_CHG_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"CHG","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.55","RAW_FILE_NAME(C8-POS)":"B0006_XAV_Rachele_GutBacteria_CP-SP-R2_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0006_XAV_Rachele_GutBacteria_HP-SP-R2_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0006_XAV_Rachele_GutBacteria_HN-SP-R2_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0006_XAV_Rachele_GutBacteria_CN-SP-R2_CHG_48h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.56","RAW_FILE_NAME(C8-POS)":"B0007_XAV_Rachele_GutBacteria_CP-SP-R1_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0007_XAV_Rachele_GutBacteria_HP-SP-R1_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0007_XAV_Rachele_GutBacteria_HN-SP-R1_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0007_XAV_Rachele_GutBacteria_CN-SP-R1_CHG_48h"}
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{
"Subject ID":"-",
"Sample ID":"SP-R3_CHG_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.57","RAW_FILE_NAME(C8-POS)":"B0008_XAV_Rachele_GutBacteria_CP-SP-R3_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0008_XAV_Rachele_GutBacteria_HP-SP-R3_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0008_XAV_Rachele_GutBacteria_HN-SP-R3_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0008_XAV_Rachele_GutBacteria_CN-SP-R3_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_CHG_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.5","RAW_FILE_NAME(C8-POS)":"B0011_XAV_Rachele_GutBacteria_CP-TB-R2_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0011_XAV_Rachele_GutBacteria_HP-TB-R2_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0011_XAV_Rachele_GutBacteria_HN-TB-R2_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0011_XAV_Rachele_GutBacteria_CN-TB-R2_CHG_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_CHG_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.49","RAW_FILE_NAME(C8-POS)":"B0014_XAV_Rachele_GutBacteria_CP-TB-R1_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0014_XAV_Rachele_GutBacteria_HP-TB-R1_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0014_XAV_Rachele_GutBacteria_HN-TB-R1_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0014_XAV_Rachele_GutBacteria_CN-TB-R1_CHG_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_CHG_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.51","RAW_FILE_NAME(C8-POS)":"B0018_XAV_Rachele_GutBacteria_CP-TB-R3_CHG_6h","RAW_FILE_NAME(HILIC-POS)":"B0018_XAV_Rachele_GutBacteria_HP-TB-R3_CHG_6h","RAW_FILE_NAME(HILIC-NEG)":"B0018_XAV_Rachele_GutBacteria_HN-TB-R3_CHG_6h","RAW_FILE_NAME(C18-NEG)":"B0018_XAV_Rachele_GutBacteria_CN-TB-R3_CHG_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_CHG_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.13","RAW_FILE_NAME(C8-POS)":"B0012_XAV_Rachele_GutBacteria_CP-TB-R3_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0012_XAV_Rachele_GutBacteria_HP-TB-R3_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0012_XAV_Rachele_GutBacteria_HN-TB-R3_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0012_XAV_Rachele_GutBacteria_CN-TB-R3_CHG_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_CHG_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.14","RAW_FILE_NAME(C8-POS)":"B0013_XAV_Rachele_GutBacteria_CP-TB-R2_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0013_XAV_Rachele_GutBacteria_HP-TB-R2_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0013_XAV_Rachele_GutBacteria_HN-TB-R2_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0013_XAV_Rachele_GutBacteria_CN-TB-R2_CHG_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_CHG_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.14","RAW_FILE_NAME(C8-POS)":"B0015_XAV_Rachele_GutBacteria_CP-TB-R1_CHG_24h","RAW_FILE_NAME(HILIC-POS)":"B0015_XAV_Rachele_GutBacteria_HP-TB-R1_CHG_24h","RAW_FILE_NAME(HILIC-NEG)":"B0015_XAV_Rachele_GutBacteria_HN-TB-R1_CHG_24h","RAW_FILE_NAME(C18-NEG)":"B0015_XAV_Rachele_GutBacteria_CN-TB-R1_CHG_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.15","RAW_FILE_NAME(C8-POS)":"B0010_XAV_Rachele_GutBacteria_CP-TB-R1_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0010_XAV_Rachele_GutBacteria_HP-TB-R1_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0010_XAV_Rachele_GutBacteria_HN-TB-R1_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0010_XAV_Rachele_GutBacteria_CN-TB-R1_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.15","RAW_FILE_NAME(C8-POS)":"B0016_XAV_Rachele_GutBacteria_CP-TB-R3_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0016_XAV_Rachele_GutBacteria_HP-TB-R3_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0016_XAV_Rachele_GutBacteria_HN-TB-R3_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0016_XAV_Rachele_GutBacteria_CN-TB-R3_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_CHG_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"CHG","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.15","RAW_FILE_NAME(C8-POS)":"B0017_XAV_Rachele_GutBacteria_CP-TB-R2_CHG_48h","RAW_FILE_NAME(HILIC-POS)":"B0017_XAV_Rachele_GutBacteria_HP-TB-R2_CHG_48h","RAW_FILE_NAME(HILIC-NEG)":"B0017_XAV_Rachele_GutBacteria_HN-TB-R2_CHG_48h","RAW_FILE_NAME(C18-NEG)":"B0017_XAV_Rachele_GutBacteria_CN-TB-R2_CHG_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R3_Gifu_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.47","RAW_FILE_NAME(C8-POS)":"B0310_RI_B0190_XAV_Rachele_GutBacteria_CP-CB-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0190_XAV_Rachele_GutBacteria_HP-CB-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0190_XAV_Rachele_GutBacteria_HN-CB-R3_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0190_XAV_Rachele_GutBacteria_CN-CB-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R1_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.49","RAW_FILE_NAME(C8-POS)":"B0311_RI_B0191_XAV_Rachele_GutBacteria_CP-CB-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0191_XAV_Rachele_GutBacteria_HP-CB-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0191_XAV_Rachele_GutBacteria_HN-CB-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0191_XAV_Rachele_GutBacteria_CN-CB-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.48","RAW_FILE_NAME(C8-POS)":"B0313_RI_B0193_XAV_Rachele_GutBacteria_CP-CB-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0193_XAV_Rachele_GutBacteria_HP-CB-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0193_XAV_Rachele_GutBacteria_HN-CB-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0193_XAV_Rachele_GutBacteria_CN-CB-R2_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.41","RAW_FILE_NAME(C8-POS)":"B0307_RI_B0187_XAV_Rachele_GutBacteria_CP-CB-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0187_XAV_Rachele_GutBacteria_HP-CB-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0187_XAV_Rachele_GutBacteria_HN-CB-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0187_XAV_Rachele_GutBacteria_CN-CB-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R3_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.39","RAW_FILE_NAME(C8-POS)":"B0314_RI_B0194_XAV_Rachele_GutBacteria_CP-CB-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0194_XAV_Rachele_GutBacteria_HP-CB-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0194_XAV_Rachele_GutBacteria_HN-CB-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0194_XAV_Rachele_GutBacteria_CN-CB-R3_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R1_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.41","RAW_FILE_NAME(C8-POS)":"B0315_RI_B0195_XAV_Rachele_GutBacteria_CP-CB-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0195_XAV_Rachele_GutBacteria_HP-CB-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0195_XAV_Rachele_GutBacteria_HN-CB-R1_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0195_RI_RI_XAV_Rachele_GutBacteria_CN-CB-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R1_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.43","RAW_FILE_NAME(C8-POS)":"B0308_RI_B0188_XAV_Rachele_GutBacteria_CP-CB-R1_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0188_XAV_Rachele_GutBacteria_HP-CB-R1_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0188_XAV_Rachele_GutBacteria_HN-CB-R1_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0188_XAV_Rachele_GutBacteria_CN-CB-R1_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R3_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.44","RAW_FILE_NAME(C8-POS)":"B0309_RI_B0189_XAV_Rachele_GutBacteria_CP-CB-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0189_XAV_Rachele_GutBacteria_HP-CB-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0189_XAV_Rachele_GutBacteria_HN-CB-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0189_XAV_Rachele_GutBacteria_CN-CB-R3_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R2_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.44","RAW_FILE_NAME(C8-POS)":"B0312_RI_B0192_XAV_Rachele_GutBacteria_CP-CB-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0192_XAV_Rachele_GutBacteria_HP-CB-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0192_XAV_Rachele_GutBacteria_HN-CB-R2_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0192_XAV_Rachele_GutBacteria_CN-CB-R2_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R1_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.31","RAW_FILE_NAME(C8-POS)":"B0178_XAV_Rachele_GutBacteria_CP-CC-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0178_XAV_Rachele_GutBacteria_HP-CC-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0178_XAV_Rachele_GutBacteria_HN-CC-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0178_XAV_Rachele_GutBacteria_CN-CC-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.3","RAW_FILE_NAME(C8-POS)":"B0180_XAV_Rachele_GutBacteria_CP-CC-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0180_XAV_Rachele_GutBacteria_HP-CC-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0180_XAV_Rachele_GutBacteria_HN-CC-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0180_XAV_Rachele_GutBacteria_CN-CC-R2_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R3_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.3","RAW_FILE_NAME(C8-POS)":"B0184_XAV_Rachele_GutBacteria_CP-CC-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0184_XAV_Rachele_GutBacteria_HP-CC-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0184_XAV_Rachele_GutBacteria_HN-CC-R3_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0184_XAV_Rachele_GutBacteria_CN-CC-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.38","RAW_FILE_NAME(C8-POS)":"B0181_XAV_Rachele_GutBacteria_CP-CC-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0181_XAV_Rachele_GutBacteria_HP-CC-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0181_XAV_Rachele_GutBacteria_HN-CC-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0181_XAV_Rachele_GutBacteria_CN-CC-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R3_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.39","RAW_FILE_NAME(C8-POS)":"B0183_XAV_Rachele_GutBacteria_CP-CC-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0183_XAV_Rachele_GutBacteria_HP-CC-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0183_XAV_Rachele_GutBacteria_HN-CC-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0183_XAV_Rachele_GutBacteria_CN-CC-R3_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R1_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.38","RAW_FILE_NAME(C8-POS)":"B0185_XAV_Rachele_GutBacteria_CP-CC-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0185_XAV_Rachele_GutBacteria_HP-CC-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0185_XAV_Rachele_GutBacteria_HN-CC-R1_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0185_XAV_Rachele_GutBacteria_CN-CC-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R1_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.66","RAW_FILE_NAME(C8-POS)":"B0179_XAV_Rachele_GutBacteria_CP-CC-R1_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0179_XAV_Rachele_GutBacteria_HP-CC-R1_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0179_XAV_Rachele_GutBacteria_HN-CC-R1_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0179_XAV_Rachele_GutBacteria_CN-CC-R1_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R2_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.66","RAW_FILE_NAME(C8-POS)":"B0182_XAV_Rachele_GutBacteria_CP-CC-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0182_XAV_Rachele_GutBacteria_HP-CC-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0182_XAV_Rachele_GutBacteria_HN-CC-R2_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0182_XAV_Rachele_GutBacteria_CN-CC-R2_Gifu_48h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.67","RAW_FILE_NAME(C8-POS)":"B0186_XAV_Rachele_GutBacteria_CP-CC-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0186_XAV_Rachele_GutBacteria_HP-CC-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0186_XAV_Rachele_GutBacteria_HN-CC-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0186_XAV_Rachele_GutBacteria_CN-CC-R3_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.28","RAW_FILE_NAME(C8-POS)":"B0142_XAV_Rachele_GutBacteria_CP-CS-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0142_XAV_Rachele_GutBacteria_HP-CS-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0142_XAV_Rachele_GutBacteria_HN-CS-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0142_XAV_Rachele_GutBacteria_CN-CS-R2_Gifu_6h"}
},
{
"Subject ID":"-",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.27","RAW_FILE_NAME(C8-POS)":"B0143_XAV_Rachele_GutBacteria_CP-CS-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0143_XAV_Rachele_GutBacteria_HP-CS-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0143_XAV_Rachele_GutBacteria_HN-CS-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0143_XAV_Rachele_GutBacteria_CN-CS-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R3_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.27","RAW_FILE_NAME(C8-POS)":"B0147_XAV_Rachele_GutBacteria_CP-CS-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0147_XAV_Rachele_GutBacteria_HP-CS-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0200x_B0147_XAV_Rachele_GutBacteria_HN-CS-R3_Gifu_6h-re","RAW_FILE_NAME(C18-NEG)":"B0147_XAV_Rachele_GutBacteria_CN-CS-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R3_Gifu_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.11","RAW_FILE_NAME(C8-POS)":"B0145_XAV_Rachele_GutBacteria_CP-CS-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0145_XAV_Rachele_GutBacteria_HP-CS-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0145_XAV_Rachele_GutBacteria_HN-CS-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0145_XAV_Rachele_GutBacteria_CN-CS-R3_Gifu_24h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.12","RAW_FILE_NAME(C8-POS)":"B0146_XAV_Rachele_GutBacteria_CP-CS-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0146_XAV_Rachele_GutBacteria_HP-CS-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0200w_B0146_XAV_Rachele_GutBacteria_HN-CS-R1_Gifu_24h-re","RAW_FILE_NAME(C18-NEG)":"B0146_XAV_Rachele_GutBacteria_CN-CS-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.11","RAW_FILE_NAME(C8-POS)":"B0149_XAV_Rachele_GutBacteria_CP-CS-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0149_XAV_Rachele_GutBacteria_HP-CS-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0149_XAV_Rachele_GutBacteria_HN-CS-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0149_XAV_Rachele_GutBacteria_CN-CS-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R3_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.18","RAW_FILE_NAME(C8-POS)":"B0144_XAV_Rachele_GutBacteria_CP-CS-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0144_XAV_Rachele_GutBacteria_HP-CS-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0144_XAV_Rachele_GutBacteria_HN-CS-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0144_XAV_Rachele_GutBacteria_CN-CS-R3_Gifu_48h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.18","RAW_FILE_NAME(C8-POS)":"B0148_XAV_Rachele_GutBacteria_CP-CS-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0148_XAV_Rachele_GutBacteria_HP-CS-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0200y_B0148_XAV_Rachele_GutBacteria_HN-CS-R2_Gifu_48h-re","RAW_FILE_NAME(C18-NEG)":"B0148_XAV_Rachele_GutBacteria_CN-CS-R2_Gifu_48h"}
},
{
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"Sample ID":"CS-R1_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.18","RAW_FILE_NAME(C8-POS)":"B0150_XAV_Rachele_GutBacteria_CP-CS-R1_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0150_XAV_Rachele_GutBacteria_HP-CS-R1_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0150_XAV_Rachele_GutBacteria_HN-CS-R1_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0150_XAV_Rachele_GutBacteria_CN-CS-R1_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.08","RAW_FILE_NAME(C8-POS)":"B0126_XAV_Rachele_GutBacteria_CP-DL-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0126_XAV_Rachele_GutBacteria_HP-DL-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0126_XAV_Rachele_GutBacteria_HN-DL-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0126_XAV_Rachele_GutBacteria_CN-DL-R2_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R1_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.09","RAW_FILE_NAME(C8-POS)":"B0130_XAV_Rachele_GutBacteria_CP-DL-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0130_XAV_Rachele_GutBacteria_HP-DL-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0130_XAV_Rachele_GutBacteria_HN-DL-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0130_XAV_Rachele_GutBacteria_CN-DL-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R3_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.08","RAW_FILE_NAME(C8-POS)":"B0132_XAV_Rachele_GutBacteria_CP-DL-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0132_XAV_Rachele_GutBacteria_HP-DL-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0132_XAV_Rachele_GutBacteria_HN-DL-R3_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0132_XAV_Rachele_GutBacteria_CN-DL-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R3_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.8","RAW_FILE_NAME(C8-POS)":"B0125_XAV_Rachele_GutBacteria_CP-DL-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0125_XAV_Rachele_GutBacteria_HP-DL-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0125_XAV_Rachele_GutBacteria_HN-DL-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0125_XAV_Rachele_GutBacteria_CN-DL-R3_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R1_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.82","RAW_FILE_NAME(C8-POS)":"B0128_XAV_Rachele_GutBacteria_CP-DL-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0128_XAV_Rachele_GutBacteria_HP-DL-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0128_XAV_Rachele_GutBacteria_HN-DL-R1_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0128_XAV_Rachele_GutBacteria_CN-DL-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.82","RAW_FILE_NAME(C8-POS)":"B0131_XAV_Rachele_GutBacteria_CP-DL-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0131_XAV_Rachele_GutBacteria_HP-DL-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0131_XAV_Rachele_GutBacteria_HN-DL-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0131_XAV_Rachele_GutBacteria_CN-DL-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R2_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.51","RAW_FILE_NAME(C8-POS)":"B0124_XAV_Rachele_GutBacteria_CP-DL-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0124_XAV_Rachele_GutBacteria_HP-DL-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0124_XAV_Rachele_GutBacteria_HN-DL-R2_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0124_XAV_Rachele_GutBacteria_CN-DL-R2_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R3_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.52","RAW_FILE_NAME(C8-POS)":"B0127_XAV_Rachele_GutBacteria_CP-DL-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0127_XAV_Rachele_GutBacteria_HP-DL-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0127_XAV_Rachele_GutBacteria_HN-DL-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0127_XAV_Rachele_GutBacteria_CN-DL-R3_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R1_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.52","RAW_FILE_NAME(C8-POS)":"B0129_XAV_Rachele_GutBacteria_CP-DL-R1_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0129_XAV_Rachele_GutBacteria_HP-DL-R1_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0129_XAV_Rachele_GutBacteria_HN-DL-R1_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0129_XAV_Rachele_GutBacteria_CN-DL-R1_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.36","RAW_FILE_NAME(C8-POS)":"B0136_XAV_Rachele_GutBacteria_CP-FP-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0136_XAV_Rachele_GutBacteria_HP-FP-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0136_XAV_Rachele_GutBacteria_HN-FP-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0136_XAV_Rachele_GutBacteria_CN-FP-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.35","RAW_FILE_NAME(C8-POS)":"B0137_XAV_Rachele_GutBacteria_CP-FP-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0137_XAV_Rachele_GutBacteria_HP-FP-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0137_XAV_Rachele_GutBacteria_HN-FP-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0137_XAV_Rachele_GutBacteria_CN-FP-R2_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.36","RAW_FILE_NAME(C8-POS)":"B0138_XAV_Rachele_GutBacteria_CP-FP-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0138_XAV_Rachele_GutBacteria_HP-FP-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0138_XAV_Rachele_GutBacteria_HN-FP-R3_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0138_XAV_Rachele_GutBacteria_CN-FP-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.95","RAW_FILE_NAME(C8-POS)":"B0134_XAV_Rachele_GutBacteria_CP-FP-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0134_XAV_Rachele_GutBacteria_HP-FP-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0134_XAV_Rachele_GutBacteria_HN-FP-R1_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0134_XAV_Rachele_GutBacteria_CN-FP-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.95","RAW_FILE_NAME(C8-POS)":"B0135_XAV_Rachele_GutBacteria_CP-FP-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0135_XAV_Rachele_GutBacteria_HP-FP-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0135_XAV_Rachele_GutBacteria_HN-FP-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0135_XAV_Rachele_GutBacteria_CN-FP-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.94","RAW_FILE_NAME(C8-POS)":"B0141_XAV_Rachele_GutBacteria_CP-FP-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0141_XAV_Rachele_GutBacteria_HP-FP-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0141_XAV_Rachele_GutBacteria_HN-FP-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0141_XAV_Rachele_GutBacteria_CN-FP-R3_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.5","RAW_FILE_NAME(C8-POS)":"B0133_XAV_Rachele_GutBacteria_CP-FP-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0133_XAV_Rachele_GutBacteria_HP-FP-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0133_XAV_Rachele_GutBacteria_HN-FP-R2_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0133_XAV_Rachele_GutBacteria_CN-FP-R2_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.49","RAW_FILE_NAME(C8-POS)":"B0139_XAV_Rachele_GutBacteria_CP-FP-R1_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0139_XAV_Rachele_GutBacteria_HP-FP-R1_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0139_XAV_Rachele_GutBacteria_HN-FP-R1_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0139_XAV_Rachele_GutBacteria_CN-FP-R1_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Flavonifractor plautii","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.49","RAW_FILE_NAME(C8-POS)":"B0140_XAV_Rachele_GutBacteria_CP-FP-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0140_XAV_Rachele_GutBacteria_HP-FP-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0140_XAV_Rachele_GutBacteria_HN-FP-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0140_XAV_Rachele_GutBacteria_CN-FP-R3_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"1.6","RAW_FILE_NAME(C8-POS)":"B0161_XAV_Rachele_GutBacteria_CP-SP-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0161_XAV_Rachele_GutBacteria_HP-SP-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0161_XAV_Rachele_GutBacteria_HN-SP-R3_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0161_XAV_Rachele_GutBacteria_CN-SP-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R1_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"1.6","RAW_FILE_NAME(C8-POS)":"B0164_XAV_Rachele_GutBacteria_CP-SP-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0164_XAV_Rachele_GutBacteria_HP-SP-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0164_XAV_Rachele_GutBacteria_HN-SP-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0164_XAV_Rachele_GutBacteria_CN-SP-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"1.58","RAW_FILE_NAME(C8-POS)":"B0168_XAV_Rachele_GutBacteria_CP-SP-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0168_XAV_Rachele_GutBacteria_HP-SP-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0168_XAV_Rachele_GutBacteria_HN-SP-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0168_XAV_Rachele_GutBacteria_CN-SP-R2_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R1_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.41","RAW_FILE_NAME(C8-POS)":"B0162_XAV_Rachele_GutBacteria_CP-SP-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0162_XAV_Rachele_GutBacteria_HP-SP-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0162_XAV_Rachele_GutBacteria_HN-SP-R1_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0162_XAV_Rachele_GutBacteria_CN-SP-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.42","RAW_FILE_NAME(C8-POS)":"B0165_XAV_Rachele_GutBacteria_CP-SP-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0165_XAV_Rachele_GutBacteria_HP-SP-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0165_XAV_Rachele_GutBacteria_HN-SP-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0165_XAV_Rachele_GutBacteria_CN-SP-R3_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.41","RAW_FILE_NAME(C8-POS)":"B0166_XAV_Rachele_GutBacteria_CP-SP-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0166_XAV_Rachele_GutBacteria_HP-SP-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0166_XAV_Rachele_GutBacteria_HN-SP-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0166_XAV_Rachele_GutBacteria_CN-SP-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.47","RAW_FILE_NAME(C8-POS)":"B0160_XAV_Rachele_GutBacteria_CP-SP-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0160_XAV_Rachele_GutBacteria_HP-SP-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0160_XAV_Rachele_GutBacteria_HN-SP-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0160_XAV_Rachele_GutBacteria_CN-SP-R3_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.48","RAW_FILE_NAME(C8-POS)":"B0167_XAV_Rachele_GutBacteria_CP-SP-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0167_XAV_Rachele_GutBacteria_HP-SP-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0167_XAV_Rachele_GutBacteria_HN-SP-R2_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0167_XAV_Rachele_GutBacteria_CN-SP-R2_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.88","RAW_FILE_NAME(C8-POS)":"B0154_XAV_Rachele_GutBacteria_CP-TB-R2_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0154_XAV_Rachele_GutBacteria_HP-TB-R2_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0154_XAV_Rachele_GutBacteria_HN-TB-R2_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0154_XAV_Rachele_GutBacteria_CN-TB-R2_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.86","RAW_FILE_NAME(C8-POS)":"B0157_XAV_Rachele_GutBacteria_CP-TB-R3_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0157_XAV_Rachele_GutBacteria_HP-TB-R3_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0157_XAV_Rachele_GutBacteria_HN-TB-R3_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0157_XAV_Rachele_GutBacteria_CN-TB-R3_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_Gifu_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.87","RAW_FILE_NAME(C8-POS)":"B0158_XAV_Rachele_GutBacteria_CP-TB-R1_Gifu_6h","RAW_FILE_NAME(HILIC-POS)":"B0158_XAV_Rachele_GutBacteria_HP-TB-R1_Gifu_6h","RAW_FILE_NAME(HILIC-NEG)":"B0158_XAV_Rachele_GutBacteria_HN-TB-R1_Gifu_6h","RAW_FILE_NAME(C18-NEG)":"B0158_XAV_Rachele_GutBacteria_CN-TB-R1_Gifu_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.22","RAW_FILE_NAME(C8-POS)":"B0152_XAV_Rachele_GutBacteria_CP-TB-R2_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0152_XAV_Rachele_GutBacteria_HP-TB-R2_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0152_XAV_Rachele_GutBacteria_HN-TB-R2_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0152_XAV_Rachele_GutBacteria_CN-TB-R2_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.2","RAW_FILE_NAME(C8-POS)":"B0155_XAV_Rachele_GutBacteria_CP-TB-R1_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0155_XAV_Rachele_GutBacteria_HP-TB-R1_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0155_XAV_Rachele_GutBacteria_HN-TB-R1_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0155_XAV_Rachele_GutBacteria_CN-TB-R1_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_Gifu_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.2","RAW_FILE_NAME(C8-POS)":"B0156_XAV_Rachele_GutBacteria_CP-TB-R3_Gifu_24h","RAW_FILE_NAME(HILIC-POS)":"B0156_XAV_Rachele_GutBacteria_HP-TB-R3_Gifu_24h","RAW_FILE_NAME(HILIC-NEG)":"B0156_XAV_Rachele_GutBacteria_HN-TB-R3_Gifu_24h","RAW_FILE_NAME(C18-NEG)":"B0156_XAV_Rachele_GutBacteria_CN-TB-R3_Gifu_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.61","RAW_FILE_NAME(C8-POS)":"B0151_XAV_Rachele_GutBacteria_CP-TB-R1_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0151_XAV_Rachele_GutBacteria_HP-TB-R1_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0151_XAV_Rachele_GutBacteria_HN-TB-R1_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0151_XAV_Rachele_GutBacteria_CN-TB-R1_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.6","RAW_FILE_NAME(C8-POS)":"B0153_XAV_Rachele_GutBacteria_CP-TB-R3_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0153_XAV_Rachele_GutBacteria_HP-TB-R3_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0153_XAV_Rachele_GutBacteria_HN-TB-R3_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0153_XAV_Rachele_GutBacteria_CN-TB-R3_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_Gifu_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Gifu","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.6","RAW_FILE_NAME(C8-POS)":"B0159_XAV_Rachele_GutBacteria_CP-TB-R2_Gifu_48h","RAW_FILE_NAME(HILIC-POS)":"B0159_XAV_Rachele_GutBacteria_HP-TB-R2_Gifu_48h","RAW_FILE_NAME(HILIC-NEG)":"B0159_XAV_Rachele_GutBacteria_HN-TB-R2_Gifu_48h","RAW_FILE_NAME(C18-NEG)":"B0159_XAV_Rachele_GutBacteria_CN-TB-R2_Gifu_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R2_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0073_XAV_Rachele_GutBacteria_CP-Control-CHG_R2_0h","RAW_FILE_NAME(HILIC-POS)":"B0073_XAV_Rachele_GutBacteria_HP-Control-CHG_R2_0h","RAW_FILE_NAME(HILIC-NEG)":"B0073_XAV_Rachele_GutBacteria_HN-Control-CHG_R2_0h","RAW_FILE_NAME(C18-NEG)":"B0073_XAV_Rachele_GutBacteria_CN-Control-CHG_R2_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R3_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0080_XAV_Rachele_GutBacteria_CP-Control-CHG_R3_0h","RAW_FILE_NAME(HILIC-POS)":"B0080_XAV_Rachele_GutBacteria_HP-Control-CHG_R3_0h","RAW_FILE_NAME(HILIC-NEG)":"B0080_XAV_Rachele_GutBacteria_HN-Control-CHG_R3_0h","RAW_FILE_NAME(C18-NEG)":"B0080_XAV_Rachele_GutBacteria_CN-Control-CHG_R3_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R1_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0081_XAV_Rachele_GutBacteria_CP-Control-CHG_R1_0h","RAW_FILE_NAME(HILIC-POS)":"B0081_XAV_Rachele_GutBacteria_HP-Control-CHG_R1_0h","RAW_FILE_NAME(HILIC-NEG)":"B0081_XAV_Rachele_GutBacteria_HN-Control-CHG_R1_0h","RAW_FILE_NAME(C18-NEG)":"B0081_XAV_Rachele_GutBacteria_CN-Control-CHG_R1_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R1_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0075_XAV_Rachele_GutBacteria_CP-Control-CHG_R1_6h","RAW_FILE_NAME(HILIC-POS)":"B0075_XAV_Rachele_GutBacteria_HP-Control-CHG_R1_6h","RAW_FILE_NAME(HILIC-NEG)":"B0075_XAV_Rachele_GutBacteria_HN-Control-CHG_R1_6h","RAW_FILE_NAME(C18-NEG)":"B0075_XAV_Rachele_GutBacteria_CN-Control-CHG_R1_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R3_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0082_XAV_Rachele_GutBacteria_CP-Control-CHG_R3_6h","RAW_FILE_NAME(HILIC-POS)":"B0082_XAV_Rachele_GutBacteria_HP-Control-CHG_R3_6h","RAW_FILE_NAME(HILIC-NEG)":"B0082_XAV_Rachele_GutBacteria_HN-Control-CHG_R3_6h","RAW_FILE_NAME(C18-NEG)":"B0082_XAV_Rachele_GutBacteria_CN-Control-CHG_R3_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R2_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0083_XAV_Rachele_GutBacteria_CP-Control-CHG_R2_6h","RAW_FILE_NAME(HILIC-POS)":"B0083_XAV_Rachele_GutBacteria_HP-Control-CHG_R2_6h","RAW_FILE_NAME(HILIC-NEG)":"B0083_XAV_Rachele_GutBacteria_HN-Control-CHG_R2_6h","RAW_FILE_NAME(C18-NEG)":"B0083_XAV_Rachele_GutBacteria_CN-Control-CHG_R2_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R2_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0074_XAV_Rachele_GutBacteria_CP-Control-CHG_R2_24h","RAW_FILE_NAME(HILIC-POS)":"B0074_XAV_Rachele_GutBacteria_HP-Control-CHG_R2_24h","RAW_FILE_NAME(HILIC-NEG)":"B0074_XAV_Rachele_GutBacteria_HN-Control-CHG_R2_24h","RAW_FILE_NAME(C18-NEG)":"B0074_XAV_Rachele_GutBacteria_CN-Control-CHG_R2_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R3_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0079_XAV_Rachele_GutBacteria_CP-Control-CHG_R3_24h","RAW_FILE_NAME(HILIC-POS)":"B0079_XAV_Rachele_GutBacteria_HP-Control-CHG_R3_24h","RAW_FILE_NAME(HILIC-NEG)":"B0079_XAV_Rachele_GutBacteria_HN-Control-CHG_R3_24h","RAW_FILE_NAME(C18-NEG)":"B0079_XAV_Rachele_GutBacteria_CN-Control-CHG_R3_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R1_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0084_XAV_Rachele_GutBacteria_CP-Control-CHG_R1_24h","RAW_FILE_NAME(HILIC-POS)":"B0084_XAV_Rachele_GutBacteria_HP-Control-CHG_R1_24h","RAW_FILE_NAME(HILIC-NEG)":"B0084_XAV_Rachele_GutBacteria_HN-Control-CHG_R1_24h","RAW_FILE_NAME(C18-NEG)":"B0084_XAV_Rachele_GutBacteria_CN-Control-CHG_R1_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R3_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0076_XAV_Rachele_GutBacteria_CP-Control-CHG_R3_48h","RAW_FILE_NAME(HILIC-POS)":"B0076_XAV_Rachele_GutBacteria_HP-Control-CHG_R3_48h","RAW_FILE_NAME(HILIC-NEG)":"B0076_XAV_Rachele_GutBacteria_HN-Control-CHG_R3_48h","RAW_FILE_NAME(C18-NEG)":"B0076_XAV_Rachele_GutBacteria_CN-Control-CHG_R3_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R1_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0077_XAV_Rachele_GutBacteria_CP-Control-CHG_R1_48h","RAW_FILE_NAME(HILIC-POS)":"B0077_XAV_Rachele_GutBacteria_HP-Control-CHG_R1_48h","RAW_FILE_NAME(HILIC-NEG)":"B0077_XAV_Rachele_GutBacteria_HN-Control-CHG_R1_48h","RAW_FILE_NAME(C18-NEG)":"B0077_XAV_Rachele_GutBacteria_CN-Control-CHG_R1_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-CHG_R2_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control CHG","Replicate":"CHG"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0078_XAV_Rachele_GutBacteria_CP-Control-CHG_R2_48h","RAW_FILE_NAME(HILIC-POS)":"B0078_XAV_Rachele_GutBacteria_HP-Control-CHG_R2_48h","RAW_FILE_NAME(HILIC-NEG)":"B0078_XAV_Rachele_GutBacteria_HN-Control-CHG_R2_48h","RAW_FILE_NAME(C18-NEG)":"B0078_XAV_Rachele_GutBacteria_CN-Control-CHG_R2_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R1_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0113_XAV_Rachele_GutBacteria_CP-Control-Gifu_R1_0h","RAW_FILE_NAME(HILIC-POS)":"B0113_XAV_Rachele_GutBacteria_HP-Control-Gifu_R1_0h","RAW_FILE_NAME(HILIC-NEG)":"B0113_XAV_Rachele_GutBacteria_HN-Control-Gifu_R1_0h","RAW_FILE_NAME(C18-NEG)":"B0113_XAV_Rachele_GutBacteria_CN-Control-Gifu_R1_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R2_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0115_XAV_Rachele_GutBacteria_CP-Control-Gifu_R2_0h","RAW_FILE_NAME(HILIC-POS)":"B0115_XAV_Rachele_GutBacteria_HP-Control-Gifu_R2_0h","RAW_FILE_NAME(HILIC-NEG)":"B0115_XAV_Rachele_GutBacteria_HN-Control-Gifu_R2_0h","RAW_FILE_NAME(C18-NEG)":"B0115_XAV_Rachele_GutBacteria_CN-Control-Gifu_R2_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R3_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0118_XAV_Rachele_GutBacteria_CP-Control-Gifu_R3_0h","RAW_FILE_NAME(HILIC-POS)":"B0118_XAV_Rachele_GutBacteria_HP-Control-Gifu_R3_0h","RAW_FILE_NAME(HILIC-NEG)":"B0118_XAV_Rachele_GutBacteria_HN-Control-Gifu_R3_0h","RAW_FILE_NAME(C18-NEG)":"B0118_XAV_Rachele_GutBacteria_CN-Control-Gifu_R3_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R1_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0114_XAV_Rachele_GutBacteria_CP-Control-Gifu_R1_6h","RAW_FILE_NAME(HILIC-POS)":"B0114_XAV_Rachele_GutBacteria_HP-Control-Gifu_R1_6h","RAW_FILE_NAME(HILIC-NEG)":"B0114_XAV_Rachele_GutBacteria_HN-Control-Gifu_R1_6h","RAW_FILE_NAME(C18-NEG)":"B0114_XAV_Rachele_GutBacteria_CN-Control-Gifu_R1_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R3_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0119_XAV_Rachele_GutBacteria_CP-Control-Gifu_R3_6h","RAW_FILE_NAME(HILIC-POS)":"B0119_XAV_Rachele_GutBacteria_HP-Control-Gifu_R3_6h","RAW_FILE_NAME(HILIC-NEG)":"B0119_XAV_Rachele_GutBacteria_HN-Control-Gifu_R3_6h","RAW_FILE_NAME(C18-NEG)":"B0119_XAV_Rachele_GutBacteria_CN-Control-Gifu_R3_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R2_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0122_XAV_Rachele_GutBacteria_CP-Control-Gifu_R2_6h","RAW_FILE_NAME(HILIC-POS)":"B0122_XAV_Rachele_GutBacteria_HP-Control-Gifu_R2_6h","RAW_FILE_NAME(HILIC-NEG)":"B0122_XAV_Rachele_GutBacteria_HN-Control-Gifu_R2_6h","RAW_FILE_NAME(C18-NEG)":"B0122_XAV_Rachele_GutBacteria_CN-Control-Gifu_R2_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R1_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0116_XAV_Rachele_GutBacteria_CP-Control-Gifu_R1_24h","RAW_FILE_NAME(HILIC-POS)":"B0116_XAV_Rachele_GutBacteria_HP-Control-Gifu_R1_24h","RAW_FILE_NAME(HILIC-NEG)":"B0116_XAV_Rachele_GutBacteria_HN-Control-Gifu_R1_24h","RAW_FILE_NAME(C18-NEG)":"B0116_XAV_Rachele_GutBacteria_CN-Control-Gifu_R1_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R3_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0121_XAV_Rachele_GutBacteria_CP-Control-Gifu_R3_24h","RAW_FILE_NAME(HILIC-POS)":"B0121_XAV_Rachele_GutBacteria_HP-Control-Gifu_R3_24h","RAW_FILE_NAME(HILIC-NEG)":"B0121_XAV_Rachele_GutBacteria_HN-Control-Gifu_R3_24h","RAW_FILE_NAME(C18-NEG)":"B0121_XAV_Rachele_GutBacteria_CN-Control-Gifu_R3_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R2_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0123_XAV_Rachele_GutBacteria_CP-Control-Gifu_R2_24h","RAW_FILE_NAME(HILIC-POS)":"B0123_XAV_Rachele_GutBacteria_HP-Control-Gifu_R2_24h","RAW_FILE_NAME(HILIC-NEG)":"B0123_XAV_Rachele_GutBacteria_HN-Control-Gifu_R2_24h","RAW_FILE_NAME(C18-NEG)":"B0123_XAV_Rachele_GutBacteria_CN-Control-Gifu_R2_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R1_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0112_XAV_Rachele_GutBacteria_CP-Control-Gifu_R1_48h","RAW_FILE_NAME(HILIC-POS)":"B0112_XAV_Rachele_GutBacteria_HP-Control-Gifu_R1_48h","RAW_FILE_NAME(HILIC-NEG)":"B0112_XAV_Rachele_GutBacteria_HN-Control-Gifu_R1_48h","RAW_FILE_NAME(C18-NEG)":"B0112_XAV_Rachele_GutBacteria_CN-Control-Gifu_R1_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R2_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0117_XAV_Rachele_GutBacteria_CP-Control-Gifu_R2_48h","RAW_FILE_NAME(HILIC-POS)":"B0117_XAV_Rachele_GutBacteria_HP-Control-Gifu_R2_48h","RAW_FILE_NAME(HILIC-NEG)":"B0117_XAV_Rachele_GutBacteria_HN-Control-Gifu_R2_48h","RAW_FILE_NAME(C18-NEG)":"B0117_XAV_Rachele_GutBacteria_CN-Control-Gifu_R2_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Gifu_R3_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Gifu","Replicate":"Gifu"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0120_XAV_Rachele_GutBacteria_CP-Control-Gifu_R3_48h","RAW_FILE_NAME(HILIC-POS)":"B0120_XAV_Rachele_GutBacteria_HP-Control-Gifu_R3_48h","RAW_FILE_NAME(HILIC-NEG)":"B0120_XAV_Rachele_GutBacteria_HN-Control-Gifu_R3_48h","RAW_FILE_NAME(C18-NEG)":"B0120_XAV_Rachele_GutBacteria_CN-Control-Gifu_R3_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R1_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0225_XAV_Rachele_GutBacteria_CP-Control-Mega_R1_0h","RAW_FILE_NAME(HILIC-POS)":"B0225_XAV_Rachele_GutBacteria_HP-Control-Mega_R1_0h","RAW_FILE_NAME(HILIC-NEG)":"B0225_XAV_Rachele_GutBacteria_HN-Control-Mega_R1_0h","RAW_FILE_NAME(C18-NEG)":"B0225_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R1_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R2_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0228_XAV_Rachele_GutBacteria_CP-Control-Mega_R2_0h","RAW_FILE_NAME(HILIC-POS)":"B0228_XAV_Rachele_GutBacteria_HP-Control-Mega_R2_0h","RAW_FILE_NAME(HILIC-NEG)":"B0228_XAV_Rachele_GutBacteria_HN-Control-Mega_R2_0h","RAW_FILE_NAME(C18-NEG)":"B0228_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R2_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R3_0h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"0","Sample_type":"Sample","Time.h":"0h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0232_XAV_Rachele_GutBacteria_CP-Control-Mega_R3_0h","RAW_FILE_NAME(HILIC-POS)":"B0232_XAV_Rachele_GutBacteria_HP-Control-Mega_R3_0h","RAW_FILE_NAME(HILIC-NEG)":"B0232_XAV_Rachele_GutBacteria_HN-Control-Mega_R3_0h","RAW_FILE_NAME(C18-NEG)":"B0232_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R3_0h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R3_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0223_XAV_Rachele_GutBacteria_CP-Control-Mega_R3_6h","RAW_FILE_NAME(HILIC-POS)":"B0223_XAV_Rachele_GutBacteria_HP-Control-Mega_R3_6h","RAW_FILE_NAME(HILIC-NEG)":"B0223_XAV_Rachele_GutBacteria_HN-Control-Mega_R3_6h","RAW_FILE_NAME(C18-NEG)":"B0223_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R3_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R2_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0227_XAV_Rachele_GutBacteria_CP-Control-Mega_R2_6h","RAW_FILE_NAME(HILIC-POS)":"B0227_XAV_Rachele_GutBacteria_HP-Control-Mega_R2_6h","RAW_FILE_NAME(HILIC-NEG)":"B0227_XAV_Rachele_GutBacteria_HN-Control-Mega_R2_6h","RAW_FILE_NAME(C18-NEG)":"B0227_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R2_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R1_6h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0230_XAV_Rachele_GutBacteria_CP-Control-Mega_R1_6h","RAW_FILE_NAME(HILIC-POS)":"B0230_XAV_Rachele_GutBacteria_HP-Control-Mega_R1_6h","RAW_FILE_NAME(HILIC-NEG)":"B0230_XAV_Rachele_GutBacteria_HN-Control-Mega_R1_6h","RAW_FILE_NAME(C18-NEG)":"B0230_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R1_6h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R3_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0224_XAV_Rachele_GutBacteria_CP-Control-Mega_R3_24h","RAW_FILE_NAME(HILIC-POS)":"B0224_XAV_Rachele_GutBacteria_HP-Control-Mega_R3_24h","RAW_FILE_NAME(HILIC-NEG)":"B0224_XAV_Rachele_GutBacteria_HN-Control-Mega_R3_24h","RAW_FILE_NAME(C18-NEG)":"B0224_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R3_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R2_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0231_XAV_Rachele_GutBacteria_CP-Control-Mega_R2_24h","RAW_FILE_NAME(HILIC-POS)":"B0231_XAV_Rachele_GutBacteria_HP-Control-Mega_R2_24h","RAW_FILE_NAME(HILIC-NEG)":"B0231_XAV_Rachele_GutBacteria_HN-Control-Mega_R2_24h","RAW_FILE_NAME(C18-NEG)":"B0231_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R2_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R1_24h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0234_XAV_Rachele_GutBacteria_CP-Control-Mega_R1_24h","RAW_FILE_NAME(HILIC-POS)":"B0234_XAV_Rachele_GutBacteria_HP-Control-Mega_R1_24h","RAW_FILE_NAME(HILIC-NEG)":"B0234_XAV_Rachele_GutBacteria_HN-Control-Mega_R1_24h","RAW_FILE_NAME(C18-NEG)":"B0234_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R1_24h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R1_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0226_XAV_Rachele_GutBacteria_CP-Control-Mega_R1_48h","RAW_FILE_NAME(HILIC-POS)":"B0226_XAV_Rachele_GutBacteria_HP-Control-Mega_R1_48h","RAW_FILE_NAME(HILIC-NEG)":"B0226_XAV_Rachele_GutBacteria_HN-Control-Mega_R1_48h","RAW_FILE_NAME(C18-NEG)":"B0226_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R1_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R3_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0229_XAV_Rachele_GutBacteria_CP-Control-Mega_R3_48h","RAW_FILE_NAME(HILIC-POS)":"B0229_XAV_Rachele_GutBacteria_HP-Control-Mega_R3_48h","RAW_FILE_NAME(HILIC-NEG)":"B0229_XAV_Rachele_GutBacteria_HN-Control-Mega_R3_48h","RAW_FILE_NAME(C18-NEG)":"B0229_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R3_48h"}
},
{
"Subject ID":"-",
"Sample ID":"Control-Mega_R2_48h",
"Factors":{"Sample source":"Culture","Species":"None","Media":"Media control Mega","Replicate":"Mega"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0233_XAV_Rachele_GutBacteria_CP-Control-Mega_R2_48h","RAW_FILE_NAME(HILIC-POS)":"B0233_XAV_Rachele_GutBacteria_HP-Control-Mega_R2_48h","RAW_FILE_NAME(HILIC-NEG)":"B0233_XAV_Rachele_GutBacteria_HN-Control-Mega_R2_48h","RAW_FILE_NAME(C18-NEG)":"B0233_RI_XAV_Rachele_GutBacteria_CN-Control-Mega_R2_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R2_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.75","RAW_FILE_NAME(C8-POS)":"B0207_XAV_Rachele_GutBacteria_CP-CB-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0207_XAV_Rachele_GutBacteria_HP-CB-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0207_XAV_Rachele_GutBacteria_HN-CB-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0207_RI_XAV_Rachele_GutBacteria_CN-CB-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R1_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.74","RAW_FILE_NAME(C8-POS)":"B0208_XAV_Rachele_GutBacteria_CP-CB-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0208_XAV_Rachele_GutBacteria_HP-CB-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0208_XAV_Rachele_GutBacteria_HN-CB-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0208_RI_XAV_Rachele_GutBacteria_CN-CB-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R3_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.73","RAW_FILE_NAME(C8-POS)":"B0212_XAV_Rachele_GutBacteria_CP-CB-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0212_XAV_Rachele_GutBacteria_HP-CB-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0212_XAV_Rachele_GutBacteria_HN-CB-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0212_RI_XAV_Rachele_GutBacteria_CN-CB-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R1_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.48","RAW_FILE_NAME(C8-POS)":"B0205_XAV_Rachele_GutBacteria_CP-CB-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0205_XAV_Rachele_GutBacteria_HP-CB-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0205_XAV_Rachele_GutBacteria_HN-CB-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0205_RI_XAV_Rachele_GutBacteria_CN-CB-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R3_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.48","RAW_FILE_NAME(C8-POS)":"B0210_XAV_Rachele_GutBacteria_CP-CB-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0210_XAV_Rachele_GutBacteria_HP-CB-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0210_XAV_Rachele_GutBacteria_HN-CB-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0210_RI_XAV_Rachele_GutBacteria_CN-CB-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R2_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.49","RAW_FILE_NAME(C8-POS)":"B0213_XAV_Rachele_GutBacteria_CP-CB-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0213_XAV_Rachele_GutBacteria_HP-CB-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0213_XAV_Rachele_GutBacteria_HN-CB-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0213_RI_XAV_Rachele_GutBacteria_CN-CB-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R1_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.01","RAW_FILE_NAME(C8-POS)":"B0206_XAV_Rachele_GutBacteria_CP-CB-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0206_XAV_Rachele_GutBacteria_HP-CB-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0206_XAV_Rachele_GutBacteria_HN-CB-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0206_RI_XAV_Rachele_GutBacteria_CN-CB-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R3_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.01","RAW_FILE_NAME(C8-POS)":"B0209_XAV_Rachele_GutBacteria_CP-CB-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0209_XAV_Rachele_GutBacteria_HP-CB-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0209_XAV_Rachele_GutBacteria_HN-CB-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0209_RI_XAV_Rachele_GutBacteria_CN-CB-R3_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CB-R2_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium bolteae","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.01","RAW_FILE_NAME(C8-POS)":"B0211_XAV_Rachele_GutBacteria_CP-CB-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0211_XAV_Rachele_GutBacteria_HP-CB-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0211_XAV_Rachele_GutBacteria_HN-CB-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0211_RI_XAV_Rachele_GutBacteria_CN-CB-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R2_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.68","RAW_FILE_NAME(C8-POS)":"B0319_RI_B0301_XAV_Rachele_GutBacteria_CP-CC-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0301_XAV_Rachele_GutBacteria_HP-CC-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0301_XAV_Rachele_GutBacteria_HN-CC-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0301_XAV_Rachele_GutBacteria_CN-CC-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R3_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.67","RAW_FILE_NAME(C8-POS)":"B0320_RI_B0302_XAV_Rachele_GutBacteria_CP-CC-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0302_XAV_Rachele_GutBacteria_HP-CC-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0302_XAV_Rachele_GutBacteria_HN-CC-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0302_XAV_Rachele_GutBacteria_CN-CC-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R1_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.69","RAW_FILE_NAME(C8-POS)":"B0322_RI_B0304_XAV_Rachele_GutBacteria_CP-CC-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0304_XAV_Rachele_GutBacteria_HP-CC-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0304_XAV_Rachele_GutBacteria_HN-CC-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0304_XAV_Rachele_GutBacteria_CN-CC-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R3_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.72","RAW_FILE_NAME(C8-POS)":"B0318_RI_B0300_XAV_Rachele_GutBacteria_CP-CC-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0300_XAV_Rachele_GutBacteria_HP-CC-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0300_XAV_Rachele_GutBacteria_HN-CC-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0300_XAV_Rachele_GutBacteria_CN-CC-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R2_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.73","RAW_FILE_NAME(C8-POS)":"B0321_RI_B0303_XAV_Rachele_GutBacteria_CP-CC-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0303_XAV_Rachele_GutBacteria_HP-CC-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0303_XAV_Rachele_GutBacteria_HN-CC-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0303_XAV_Rachele_GutBacteria_CN-CC-R2_Mega_24h"}
},
{
"Subject ID":"-",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.72","RAW_FILE_NAME(C8-POS)":"B0324_RI_B0306_XAV_Rachele_GutBacteria_CP-CC-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0306_XAV_Rachele_GutBacteria_HP-CC-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0306_XAV_Rachele_GutBacteria_HN-CC-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0306_XAV_Rachele_GutBacteria_CN-CC-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R1_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0316_RI_B0298_XAV_Rachele_GutBacteria_CP-CC-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0298_XAV_Rachele_GutBacteria_HP-CC-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0298_XAV_Rachele_GutBacteria_HN-CC-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0298_XAV_Rachele_GutBacteria_CN-CC-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R3_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium clostridioforme","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0317_RI_B0299_XAV_Rachele_GutBacteria_CP-CC-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0299_XAV_Rachele_GutBacteria_HP-CC-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0299_XAV_Rachele_GutBacteria_HN-CC-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0299_XAV_Rachele_GutBacteria_CN-CC-R3_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CC-R2_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0323_RI_B0305_XAV_Rachele_GutBacteria_CP-CC-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0305_XAV_Rachele_GutBacteria_HP-CC-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0305_XAV_Rachele_GutBacteria_HN-CC-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0305_XAV_Rachele_GutBacteria_CN-CC-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R1_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium innocuum","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.16","RAW_FILE_NAME(C8-POS)":"B0258_XAV_Rachele_GutBacteria_CP-CI-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0258_XAV_Rachele_GutBacteria_HP-CI-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0258_XAV_Rachele_GutBacteria_HN-CI-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0258_XAV_Rachele_GutBacteria_CN-CI-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R3_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.16","RAW_FILE_NAME(C8-POS)":"B0259_XAV_Rachele_GutBacteria_CP-CI-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0259_XAV_Rachele_GutBacteria_HP-CI-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0259_XAV_Rachele_GutBacteria_HN-CI-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0259_XAV_Rachele_GutBacteria_CN-CI-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R2_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.17","RAW_FILE_NAME(C8-POS)":"B0260_XAV_Rachele_GutBacteria_CP-CI-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0260_XAV_Rachele_GutBacteria_HP-CI-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0260_XAV_Rachele_GutBacteria_HN-CI-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0260_XAV_Rachele_GutBacteria_CN-CI-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R2_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.91","RAW_FILE_NAME(C8-POS)":"B0254_XAV_Rachele_GutBacteria_CP-CI-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0254_XAV_Rachele_GutBacteria_HP-CI-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0254_XAV_Rachele_GutBacteria_HN-CI-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0254_XAV_Rachele_GutBacteria_CN-CI-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R1_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium innocuum","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.9","RAW_FILE_NAME(C8-POS)":"B0255_XAV_Rachele_GutBacteria_CP-CI-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0255_XAV_Rachele_GutBacteria_HP-CI-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0255_XAV_Rachele_GutBacteria_HN-CI-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0255_XAV_Rachele_GutBacteria_CN-CI-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R3_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium innocuum","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.92","RAW_FILE_NAME(C8-POS)":"B0256_XAV_Rachele_GutBacteria_CP-CI-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0256_XAV_Rachele_GutBacteria_HP-CI-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0256_XAV_Rachele_GutBacteria_HN-CI-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0256_XAV_Rachele_GutBacteria_CN-CI-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R3_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0253_XAV_Rachele_GutBacteria_CP-CI-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0253_XAV_Rachele_GutBacteria_HP-CI-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0253_XAV_Rachele_GutBacteria_HN-CI-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0253_XAV_Rachele_GutBacteria_CN-CI-R3_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R2_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium innocuum","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0257_XAV_Rachele_GutBacteria_CP-CI-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0257_XAV_Rachele_GutBacteria_HP-CI-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0257_XAV_Rachele_GutBacteria_HN-CI-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0257_XAV_Rachele_GutBacteria_CN-CI-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CI-R1_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium innocuum","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.02","RAW_FILE_NAME(C8-POS)":"B0261_XAV_Rachele_GutBacteria_CP-CI-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0261_XAV_Rachele_GutBacteria_HP-CI-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0261_XAV_Rachele_GutBacteria_HN-CI-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0261_XAV_Rachele_GutBacteria_CN-CI-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R2_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.07","RAW_FILE_NAME(C8-POS)":"B0290_XAV_Rachele_GutBacteria_CP-CS-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0290_XAV_Rachele_GutBacteria_HP-CS-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0290_XAV_Rachele_GutBacteria_HN-CS-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0290_XAV_Rachele_GutBacteria_CN-CS-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R3_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.08","RAW_FILE_NAME(C8-POS)":"B0291_XAV_Rachele_GutBacteria_CP-CS-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0291_XAV_Rachele_GutBacteria_HP-CS-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0291_XAV_Rachele_GutBacteria_HN-CS-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0291_XAV_Rachele_GutBacteria_CN-CS-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R1_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.07","RAW_FILE_NAME(C8-POS)":"B0295_XAV_Rachele_GutBacteria_CP-CS-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0295_XAV_Rachele_GutBacteria_HP-CS-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0295_XAV_Rachele_GutBacteria_HN-CS-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0295_XAV_Rachele_GutBacteria_CN-CS-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R2_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.6","RAW_FILE_NAME(C8-POS)":"B0292_XAV_Rachele_GutBacteria_CP-CS-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0292_XAV_Rachele_GutBacteria_HP-CS-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0292_XAV_Rachele_GutBacteria_HN-CS-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0292_XAV_Rachele_GutBacteria_CN-CS-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R1_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.62","RAW_FILE_NAME(C8-POS)":"B0296_XAV_Rachele_GutBacteria_CP-CS-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0296_XAV_Rachele_GutBacteria_HP-CS-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0296_XAV_Rachele_GutBacteria_HN-CS-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0296_XAV_Rachele_GutBacteria_CN-CS-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R3_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.61","RAW_FILE_NAME(C8-POS)":"B0297_XAV_Rachele_GutBacteria_CP-CS-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0297_XAV_Rachele_GutBacteria_HP-CS-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0297_XAV_Rachele_GutBacteria_HN-CS-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0297_XAV_Rachele_GutBacteria_CN-CS-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R2_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.14","RAW_FILE_NAME(C8-POS)":"B0289_XAV_Rachele_GutBacteria_CP-CS-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0289_XAV_Rachele_GutBacteria_HP-CS-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0289_XAV_Rachele_GutBacteria_HN-CS-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0289_XAV_Rachele_GutBacteria_CN-CS-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R1_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.13","RAW_FILE_NAME(C8-POS)":"B0293_XAV_Rachele_GutBacteria_CP-CS-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0293_XAV_Rachele_GutBacteria_HP-CS-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0293_XAV_Rachele_GutBacteria_HN-CS-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0293_XAV_Rachele_GutBacteria_CN-CS-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"CS-R3_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Clostridium symbiosum","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.13","RAW_FILE_NAME(C8-POS)":"B0294_XAV_Rachele_GutBacteria_CP-CS-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0294_XAV_Rachele_GutBacteria_HP-CS-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0294_XAV_Rachele_GutBacteria_HN-CS-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0294_XAV_Rachele_GutBacteria_CN-CS-R3_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R1_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"1.04","RAW_FILE_NAME(C8-POS)":"B0271_XAV_Rachele_GutBacteria_CP-DL-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0271_XAV_Rachele_GutBacteria_HP-DL-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0271_XAV_Rachele_GutBacteria_HN-DL-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0271_XAV_Rachele_GutBacteria_CN-DL-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R3_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"1.01","RAW_FILE_NAME(C8-POS)":"B0272_XAV_Rachele_GutBacteria_CP-DL-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0272_XAV_Rachele_GutBacteria_HP-DL-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0272_XAV_Rachele_GutBacteria_HN-DL-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0272_XAV_Rachele_GutBacteria_CN-DL-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R2_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"1.02","RAW_FILE_NAME(C8-POS)":"B0273_XAV_Rachele_GutBacteria_CP-DL-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0273_XAV_Rachele_GutBacteria_HP-DL-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0273_XAV_Rachele_GutBacteria_HN-DL-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0273_XAV_Rachele_GutBacteria_CN-DL-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R2_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.18","RAW_FILE_NAME(C8-POS)":"B0275_XAV_Rachele_GutBacteria_CP-DL-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0275_XAV_Rachele_GutBacteria_HP-DL-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0275_XAV_Rachele_GutBacteria_HN-DL-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0275_XAV_Rachele_GutBacteria_CN-DL-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R3_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.18","RAW_FILE_NAME(C8-POS)":"B0277_XAV_Rachele_GutBacteria_CP-DL-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0277_XAV_Rachele_GutBacteria_HP-DL-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0277_XAV_Rachele_GutBacteria_HN-DL-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0277_XAV_Rachele_GutBacteria_CN-DL-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R1_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.18","RAW_FILE_NAME(C8-POS)":"B0279_XAV_Rachele_GutBacteria_CP-DL-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0279_XAV_Rachele_GutBacteria_HP-DL-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0279_XAV_Rachele_GutBacteria_HN-DL-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0279_XAV_Rachele_GutBacteria_CN-DL-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"DL-R1_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.02","RAW_FILE_NAME(C8-POS)":"B0274_XAV_Rachele_GutBacteria_CP-DL-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0274_XAV_Rachele_GutBacteria_HP-DL-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0274_XAV_Rachele_GutBacteria_HN-DL-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0274_XAV_Rachele_GutBacteria_CN-DL-R1_Mega_48h"}
},
{
"Subject ID":"-",
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"Factors":{"Sample source":"Culture","Species":"Dorea longicatena","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.02","RAW_FILE_NAME(C8-POS)":"B0276_XAV_Rachele_GutBacteria_CP-DL-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0276_XAV_Rachele_GutBacteria_HP-DL-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0276_XAV_Rachele_GutBacteria_HN-DL-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0276_XAV_Rachele_GutBacteria_CN-DL-R3_Mega_48h"}
},
{
"Subject ID":"-",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0278_XAV_Rachele_GutBacteria_CP-DL-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0278_XAV_Rachele_GutBacteria_HP-DL-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0278_XAV_Rachele_GutBacteria_HN-DL-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0278_XAV_Rachele_GutBacteria_CN-DL-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.36","RAW_FILE_NAME(C8-POS)":"B0248_XAV_Rachele_GutBacteria_CP-FP-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0248_XAV_Rachele_GutBacteria_HP-FP-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0248_XAV_Rachele_GutBacteria_HN-FP-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0248_XAV_Rachele_GutBacteria_CN-FP-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.34","RAW_FILE_NAME(C8-POS)":"B0250_XAV_Rachele_GutBacteria_CP-FP-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0250_XAV_Rachele_GutBacteria_HP-FP-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0250_XAV_Rachele_GutBacteria_HN-FP-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0250_XAV_Rachele_GutBacteria_CN-FP-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_Mega_6h",
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"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.37","RAW_FILE_NAME(C8-POS)":"B0251_XAV_Rachele_GutBacteria_CP-FP-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0251_XAV_Rachele_GutBacteria_HP-FP-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0251_XAV_Rachele_GutBacteria_HN-FP-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0251_XAV_Rachele_GutBacteria_CN-FP-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.17","RAW_FILE_NAME(C8-POS)":"B0244_XAV_Rachele_GutBacteria_CP-FP-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0244_XAV_Rachele_GutBacteria_HP-FP-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0244_XAV_Rachele_GutBacteria_HN-FP-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0244_XAV_Rachele_GutBacteria_CN-FP-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.16","RAW_FILE_NAME(C8-POS)":"B0246_XAV_Rachele_GutBacteria_CP-FP-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0246_XAV_Rachele_GutBacteria_HP-FP-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0246_XAV_Rachele_GutBacteria_HN-FP-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0246_XAV_Rachele_GutBacteria_CN-FP-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_Mega_24h",
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"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.17","RAW_FILE_NAME(C8-POS)":"B0247_XAV_Rachele_GutBacteria_CP-FP-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0247_XAV_Rachele_GutBacteria_HP-FP-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0247_XAV_Rachele_GutBacteria_HN-FP-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0247_XAV_Rachele_GutBacteria_CN-FP-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R1_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.1","RAW_FILE_NAME(C8-POS)":"B0245_XAV_Rachele_GutBacteria_CP-FP-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0245_XAV_Rachele_GutBacteria_HP-FP-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0245_XAV_Rachele_GutBacteria_HN-FP-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0245_XAV_Rachele_GutBacteria_CN-FP-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R2_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.1","RAW_FILE_NAME(C8-POS)":"B0249_XAV_Rachele_GutBacteria_CP-FP-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0249_XAV_Rachele_GutBacteria_HP-FP-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0249_XAV_Rachele_GutBacteria_HN-FP-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0249_XAV_Rachele_GutBacteria_CN-FP-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"FP-R3_Mega_48h",
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"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0.1","RAW_FILE_NAME(C8-POS)":"B0252_XAV_Rachele_GutBacteria_CP-FP-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0252_XAV_Rachele_GutBacteria_HP-FP-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0252_XAV_Rachele_GutBacteria_HN-FP-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0252_XAV_Rachele_GutBacteria_CN-FP-R3_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R1_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.84","RAW_FILE_NAME(C8-POS)":"B0216_XAV_Rachele_GutBacteria_CP-SP-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0216_XAV_Rachele_GutBacteria_HP-SP-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0216_XAV_Rachele_GutBacteria_HN-SP-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0216_RI_XAV_Rachele_GutBacteria_CN-SP-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.85","RAW_FILE_NAME(C8-POS)":"B0218_XAV_Rachele_GutBacteria_CP-SP-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0218_XAV_Rachele_GutBacteria_HP-SP-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0218_XAV_Rachele_GutBacteria_HN-SP-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0218_RI_XAV_Rachele_GutBacteria_CN-SP-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.85","RAW_FILE_NAME(C8-POS)":"B0221_XAV_Rachele_GutBacteria_CP-SP-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0221_XAV_Rachele_GutBacteria_HP-SP-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0221_XAV_Rachele_GutBacteria_HN-SP-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0221_RI_XAV_Rachele_GutBacteria_CN-SP-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R1_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.76","RAW_FILE_NAME(C8-POS)":"B0217_XAV_Rachele_GutBacteria_CP-SP-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0217_XAV_Rachele_GutBacteria_HP-SP-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0217_XAV_Rachele_GutBacteria_HN-SP-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0217_RI_XAV_Rachele_GutBacteria_CN-SP-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.76","RAW_FILE_NAME(C8-POS)":"B0219_XAV_Rachele_GutBacteria_CP-SP-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0219_XAV_Rachele_GutBacteria_HP-SP-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0219_XAV_Rachele_GutBacteria_HN-SP-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0219_RI_XAV_Rachele_GutBacteria_CN-SP-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"1.75","RAW_FILE_NAME(C8-POS)":"B0222_XAV_Rachele_GutBacteria_CP-SP-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0222_XAV_Rachele_GutBacteria_HP-SP-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0222_XAV_Rachele_GutBacteria_HN-SP-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0222_RI_XAV_Rachele_GutBacteria_CN-SP-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R3_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.95","RAW_FILE_NAME(C8-POS)":"B0214_XAV_Rachele_GutBacteria_CP-SP-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0214_XAV_Rachele_GutBacteria_HP-SP-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0214_XAV_Rachele_GutBacteria_HN-SP-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0214_RI_XAV_Rachele_GutBacteria_CN-SP-R3_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R2_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.94","RAW_FILE_NAME(C8-POS)":"B0215_XAV_Rachele_GutBacteria_CP-SP-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0215_XAV_Rachele_GutBacteria_HP-SP-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0215_XAV_Rachele_GutBacteria_HN-SP-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0215_RI_XAV_Rachele_GutBacteria_CN-SP-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"SP-R1_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Streptococcus parasanguinis","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"1.95","RAW_FILE_NAME(C8-POS)":"B0220_XAV_Rachele_GutBacteria_CP-SP-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0220_XAV_Rachele_GutBacteria_HP-SP-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0220_XAV_Rachele_GutBacteria_HN-SP-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0220_RI_XAV_Rachele_GutBacteria_CN-SP-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.01","RAW_FILE_NAME(C8-POS)":"B0281_XAV_Rachele_GutBacteria_CP-TB-R2_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0281_XAV_Rachele_GutBacteria_HP-TB-R2_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0281_XAV_Rachele_GutBacteria_HN-TB-R2_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0281_XAV_Rachele_GutBacteria_CN-TB-R2_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.03","RAW_FILE_NAME(C8-POS)":"B0283_XAV_Rachele_GutBacteria_CP-TB-R3_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0283_XAV_Rachele_GutBacteria_HP-TB-R3_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0283_XAV_Rachele_GutBacteria_HN-TB-R3_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0283_XAV_Rachele_GutBacteria_CN-TB-R3_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_Mega_6h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"6","Sample_type":"Sample","Time.h":"6h","OD":"0.02","RAW_FILE_NAME(C8-POS)":"B0285_XAV_Rachele_GutBacteria_CP-TB-R1_Mega_6h","RAW_FILE_NAME(HILIC-POS)":"B0285_XAV_Rachele_GutBacteria_HP-TB-R1_Mega_6h","RAW_FILE_NAME(HILIC-NEG)":"B0285_XAV_Rachele_GutBacteria_HN-TB-R1_Mega_6h","RAW_FILE_NAME(C18-NEG)":"B0285_XAV_Rachele_GutBacteria_CN-TB-R1_Mega_6h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.05","RAW_FILE_NAME(C8-POS)":"B0286_XAV_Rachele_GutBacteria_CP-TB-R2_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0286_XAV_Rachele_GutBacteria_HP-TB-R2_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0286_XAV_Rachele_GutBacteria_HN-TB-R2_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0286_XAV_Rachele_GutBacteria_CN-TB-R2_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.01","RAW_FILE_NAME(C8-POS)":"B0287_XAV_Rachele_GutBacteria_CP-TB-R1_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0287_XAV_Rachele_GutBacteria_HP-TB-R1_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0287_XAV_Rachele_GutBacteria_HN-TB-R1_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0287_XAV_Rachele_GutBacteria_CN-TB-R1_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_Mega_24h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"24","Sample_type":"Sample","Time.h":"24h","OD":"0.04","RAW_FILE_NAME(C8-POS)":"B0288_XAV_Rachele_GutBacteria_CP-TB-R3_Mega_24h","RAW_FILE_NAME(HILIC-POS)":"B0288_XAV_Rachele_GutBacteria_HP-TB-R3_Mega_24h","RAW_FILE_NAME(HILIC-NEG)":"B0288_XAV_Rachele_GutBacteria_HN-TB-R3_Mega_24h","RAW_FILE_NAME(C18-NEG)":"B0288_XAV_Rachele_GutBacteria_CN-TB-R3_Mega_24h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R2_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R2"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0280_XAV_Rachele_GutBacteria_CP-TB-R2_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0280_XAV_Rachele_GutBacteria_HP-TB-R2_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0280_XAV_Rachele_GutBacteria_HN-TB-R2_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0280_XAV_Rachele_GutBacteria_CN-TB-R2_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R1_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R1"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0282_XAV_Rachele_GutBacteria_CP-TB-R1_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0282_XAV_Rachele_GutBacteria_HP-TB-R1_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0282_XAV_Rachele_GutBacteria_HN-TB-R1_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0282_XAV_Rachele_GutBacteria_CN-TB-R1_Mega_48h"}
},
{
"Subject ID":"-",
"Sample ID":"TB-R3_Mega_48h",
"Factors":{"Sample source":"Culture","Species":"Turicibacter sanguinis","Media":"Mega","Replicate":"R3"},
"Additional sample data":{"Time":"48","Sample_type":"Sample","Time.h":"48h","OD":"0","RAW_FILE_NAME(C8-POS)":"B0284_XAV_Rachele_GutBacteria_CP-TB-R3_Mega_48h","RAW_FILE_NAME(HILIC-POS)":"B0284_XAV_Rachele_GutBacteria_HP-TB-R3_Mega_48h","RAW_FILE_NAME(HILIC-NEG)":"B0284_XAV_Rachele_GutBacteria_HN-TB-R3_Mega_48h","RAW_FILE_NAME(C18-NEG)":"B0284_XAV_Rachele_GutBacteria_CN-TB-R3_Mega_48h"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"All strains were cultured anaerobically at 37°C in different media types according to the experiment being performed. The media compositions used in this study include BHI-R, CHG-R, Gifu-R, and Mega-R, each formulated with specific components to support microbial growth. BHI-R was prepared by dissolving 18.5 g of Brain Heart Infusion (BHI) and 5 g of L-arginine in 500 mL of Milli-Q water, followed by sterilization via autoclaving (10 lbs, 115°C, 15 minutes). CHG-R was based on CHG media, which contained 18.5 g of BHI, 0.5 g each of D-(+)-cellobiose, D-(+)-maltose monohydrate, and D-(-)-fructose, and 0.25 g of cysteine in 500 mL of Milli-Q water. After filter sterilization, additional supplements, including 5 mL each of Vitamin K + Hematin (1%), trace mineral supplement, and vitamin supplement, were added in an anaerobic chamber. Gifu-R was derived from commercially available Gifu Anaerobic Media (GAM) (Himedia, Cat # M1801), prepared by suspending 59 g of GAM in 1000 mL of purified/distilled water and autoclaving under the same conditions as BHI-R. Mega-R was formulated with a complex mixture of components, including 5 g of Trypticase Peptone (BBL), 2.5 g each of Yeast Extract (Bacto) and Meat Extract, and multiple carbohydrate sources such as 1 g of D-(+)-glucose and 0.5 g each of D-(+)-cellobiose, D-(+)-maltose monohydrate, and D-(-)-fructose, all dissolved in 500 mL of Milli-Q water. Additional components included 50 mL of 1 M potassium phosphate buffer (pH 7.2), 20 mL of TYG salts solution, 1 mL of 25% Tween 80, and various supplements such as SCFA, CaCl₂, FeSO₄, and resazurin. Like CHG-R, Mega-R was supplemented with 5 mL each of Vitamin K + Hematin (1%), trace mineral supplement, and vitamin supplement. For CHG-R, Gifu-R, and Mega-R, an additional 5 g of L-arginine was incorporated into 500 mL of each respective medium to create their corresponding arginine-enriched formulations. All cultures were grown in an anaerobic chamber (Coy Laboratory Products) with an atmosphere of 5% CO2, 5% H2, and 90% N2 at 37°C. The isolates were streaked onto CHG plates and incubated for 48 hours. Once colonies were visible, a single colony from each plate was picked and processed for 16S rRNA Sanger sequencing using primer sequences 27F: AGAGTTTGATCMTGGCTCAG and 1492R: GGTTACCTTGTTACGACTT. Once the identity of the bacterial strains was confirmed, a single colony from each strain was inoculated in triplicates in 6 mL of the respective media types (CHG, Gifu, Mega) and incubated overnight. The overnight cultures were inoculated into fresh media and normalized to the OD600 of 0.05. At each time point after inoculation (6h, 24h, 48 h), 200 μL of the bacterial culture were collected.","SAMPLE_TYPE":"Bacterial cells"},

"TREATMENT":{"TREATMENT_SUMMARY":"NA"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"LC–MS samples were prepared from bacterial cultures for each profiling method as follows: - HILIC-pos: Bacterial cultures (10 μL) were extracted with the addition of nine volumes of 74.9:24.9:0.2 v/v/v acetonitrile/methanol/formic acid containing stable isotope-labeled internal standards (valine-d8, Isotec; and phenylalanine-d8, Cambridge Isotope Laboratories). The samples were centrifuged (10 min, 9,000g, 4°C), and the supernatants (10 μL) injected directly onto column. - C8-pos: Bacterial cultures (10 μL) using 190 μL isopropanol containing 1-dodecanoyl-2-tridecanoyl-sn-glycero-3-phosphocholine as an internal standard (Avanti Polar Lipids; Alabaster, AL). After centrifugation (10 min, 9,000g, ambient temperature), supernatants (2 μL) were injected directly onto column. - C18-neg: Bacterial cultures (30 μL) were extracted using 90 μl methanol containing 15R-15-methyl Prostaglandin A2,15R-15-methyl Prostaglandin F2α, 15S-15-methyl Prostaglandin D2, 15S-15-methyl Prostaglandin E1, and 15S-15-methyl Prostaglandin E2 as internal standards (Cayman Chemical Co.) and centrifuged (10 min, 9,000g, 4°C). The supernatants (10 μL) were injected onto column. - HILIC-neg: Bacterial cultures (30 μL) were extracted with the addition of four volumes of 80% methanol containing inosine-15N4, thymine-d4 and glycocholate-d4 internal standards (Cambridge Isotope Laboratories). The samples were centrifuged (10 min, 9,000g, 4°C) and the supernatants 10 μL) were injected directly onto column."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Shimadzu Nexera X2","COLUMN_NAME":"Waters Acquity BEH C8 (100 x 2.1 mm, 1.7 µm)","SOLVENT_A":"95% Water/5% Methanol; 10 mM Ammonium acetate; 0.1% Acetic acid","SOLVENT_B":"100% Methanol; 0.1% Acetic acid","FLOW_GRADIENT":"The column was eluted at a flow rate of 450 µL/min isocratically for 1 minute at 80% mobile phase A, followed by a linear gradient to 80% mobile-phase B over 2 minutes, a linear gradient to 100% mobile phase B over 7 minutes, and then 3 minutes at 100% mobile-phase B.","FLOW_RATE":"450 µL/min","COLUMN_TEMPERATURE":"40°C"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Thermo Q Exactive Plus Orbitrap","INSTRUMENT_TYPE":"IDX","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_COMMENTS":"Raw data were processed using TraceFinder 3.3 software (Thermo Fisher Scientific; Waltham, MA) and Progenesis QI (Nonlinear Dynamics; Newcastle upon Tyne, UK). Metabolite identities were confirmed using authentic reference standards or reference samples.","MS_RESULTS_FILE":"ST003799_AN006245_Results.txt UNITS:Abudances Has m/z:Yes Has RT:Yes RT units:Minutes"},

"MS_METABOLITE_DATA":{
"Units":"Abudances",

"Data":[{"Metabolite":"PC 12:0/12:0 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_Mega_48h":"2319569","CC-R2_Mega_6h":"2574902","CC-R3_Mega_6h":"2594804","CC-R1_Mega_6h":"2556477","CC-R3_Mega_24h":"2832610","CC-R2_Mega_24h":"2835315","CC-R1_Mega_24h":"2953339","CC-R1_Mega_48h":"2509231","CC-R3_Mega_48h":"2732221","CC-R2_Mega_48h":"2587864","CI-R1_Mega_6h":"2524190","CI-R3_Mega_6h":"2470565","CI-R2_Mega_6h":"2259792","CI-R2_Mega_24h":"2425863","CI-R1_Mega_24h":"2495173","CI-R3_Mega_24h":"2704505","CI-R3_Mega_48h":"2256234","CI-R2_Mega_48h":"2978873","CI-R1_Mega_48h":"2918504","CS-R2_Mega_6h":"2249923","CS-R3_Mega_6h":"2197698","CS-R1_Mega_6h":"2377041","CS-R2_Mega_24h":"2699795","CS-R1_Mega_24h":"2792078","CS-R3_Mega_24h":"2418445","CS-R2_Mega_48h":"2115995","CS-R1_Mega_48h":"2731678","CS-R3_Mega_48h":"2465536","DL-R1_Mega_6h":"2218293","DL-R3_Mega_6h":"2249322","DL-R2_Mega_6h":"2393111","DL-R2_Mega_24h":"2207572","DL-R3_Mega_24h":"2639716","DL-R1_Mega_24h":"2647298","DL-R1_Mega_48h":"2165765","DL-R3_Mega_48h":"2214202","DL-R2_Mega_48h":"2349855","FP-R2_Mega_6h":"2468774","FP-R3_Mega_6h":"2325365","FP-R1_Mega_6h":"2429795","FP-R3_Mega_24h":"2421607","FP-R2_Mega_24h":"2609275","FP-R1_Mega_24h":"2627102","FP-R1_Mega_48h":"2377584","FP-R2_Mega_48h":"2430972","FP-R3_Mega_48h":"2389852","SP-R1_Mega_6h":"2309175","SP-R3_Mega_6h":"2098992","SP-R2_Mega_6h":"2464693","SP-R1_Mega_24h":"2227366","SP-R3_Mega_24h":"2121394","SP-R2_Mega_24h":"2595903","SP-R3_Mega_48h":"2136045","SP-R2_Mega_48h":"2239027","SP-R1_Mega_48h":"2611171","TB-R2_Mega_6h":"2244872","TB-R3_Mega_6h":"2426575","TB-R1_Mega_6h":"2672981","TB-R2_Mega_24h":"2292639","TB-R1_Mega_24h":"2369932","TB-R3_Mega_24h":"2264369","TB-R2_Mega_48h":"2552076","TB-R1_Mega_48h":"2399009","TB-R3_Mega_48h":"2448048"},{"Metabolite":"LPC 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R3_Mega_24h":"11567","CI-R3_Mega_48h":"17091","CI-R2_Mega_48h":"17298","CI-R1_Mega_48h":"15526","CS-R2_Mega_6h":"16210","CS-R3_Mega_6h":"16003","CS-R1_Mega_6h":"17671","CS-R2_Mega_24h":"19799","CS-R1_Mega_24h":"29231","CS-R3_Mega_24h":"17754","CS-R2_Mega_48h":"18431","CS-R1_Mega_48h":"16808","CS-R3_Mega_48h":"20653","DL-R1_Mega_6h":"15463","DL-R3_Mega_6h":"22300","DL-R2_Mega_6h":"16216","DL-R2_Mega_24h":"15180","DL-R3_Mega_24h":"20351","DL-R1_Mega_24h":"23653","DL-R1_Mega_48h":"15627","DL-R3_Mega_48h":"25353","DL-R2_Mega_48h":"38124","FP-R2_Mega_6h":"16264","FP-R3_Mega_6h":"18826","FP-R1_Mega_6h":"12145","FP-R3_Mega_24h":"23695","FP-R2_Mega_24h":"24476","FP-R1_Mega_24h":"15310","FP-R1_Mega_48h":"17874","FP-R2_Mega_48h":"29096","FP-R3_Mega_48h":"16238","SP-R1_Mega_6h":"19868","SP-R3_Mega_6h":"20617","SP-R2_Mega_6h":"31597","SP-R1_Mega_24h":"20892","SP-R3_Mega_24h":"19582","SP-R2_Mega_24h":"22975","SP-R3_Mega_48h":"24186","SP-R2_Mega_48h":"19081","SP-R1_Mega_48h":"17858","TB-R2_Mega_6h":"19214","TB-R3_Mega_6h":"20007","TB-R1_Mega_6h":"15923","TB-R2_Mega_24h":"16614","TB-R1_Mega_24h":"16425","TB-R3_Mega_24h":"13769","TB-R2_Mega_48h":"52477","TB-R1_Mega_48h":"16524","TB-R3_Mega_48h":"23842"},{"Metabolite":"TG 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R3_Mega_24h":"21668","CI-R3_Mega_48h":"23929","CI-R2_Mega_48h":"31851","CI-R1_Mega_48h":"21846","CS-R2_Mega_6h":"28227","CS-R3_Mega_6h":"24742","CS-R1_Mega_6h":"24985","CS-R2_Mega_24h":"33622","CS-R1_Mega_24h":"48980","CS-R3_Mega_24h":"24382","CS-R2_Mega_48h":"32404","CS-R1_Mega_48h":"24596","CS-R3_Mega_48h":"31617","DL-R1_Mega_6h":"23007","DL-R3_Mega_6h":"31621","DL-R2_Mega_6h":"23763","DL-R2_Mega_24h":"25862","DL-R3_Mega_24h":"35562","DL-R1_Mega_24h":"44014","DL-R1_Mega_48h":"26091","DL-R3_Mega_48h":"35929","DL-R2_Mega_48h":"57462","FP-R2_Mega_6h":"27423","FP-R3_Mega_6h":"29620","FP-R1_Mega_6h":"20623","FP-R3_Mega_24h":"33807","FP-R2_Mega_24h":"37443","FP-R1_Mega_24h":"26372","FP-R1_Mega_48h":"26463","FP-R2_Mega_48h":"49716","FP-R3_Mega_48h":"27710","SP-R1_Mega_6h":"27068","SP-R3_Mega_6h":"32121","SP-R2_Mega_6h":"42877","SP-R1_Mega_24h":"27775","SP-R3_Mega_24h":"33036","SP-R2_Mega_24h":"29245","SP-R3_Mega_48h":"36012","SP-R2_Mega_48h":"25951","SP-R1_Mega_48h":"24580","TB-R2_Mega_6h":"30096","TB-R3_Mega_6h":"28927","TB-R1_Mega_6h":"25620","TB-R2_Mega_24h":"27484","TB-R1_Mega_24h":"28720","TB-R3_Mega_24h":"25250","TB-R2_Mega_48h":"91634","TB-R1_Mega_48h":"28014","TB-R3_Mega_48h":"47404"},{"Metabolite":"TG 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}

}