{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000096","ANALYSIS_ID":"AN000152","VERSION":"1","CREATED_ON":"02-08-2024"},

"PROJECT":{"PROJECT_TITLE":"A study of changes in lipid metabolism of ovarian cancer cells co-cultured with adipocytes","PROJECT_TYPE":"timecourse study","PROJECT_SUMMARY":"A study of changes in lipid metabolism of ovarian cancer cells co-cultured with adipocytestimecourse studyThis West Coast Metabolomics Center pilot and feasibility project was granted to Ernst Lengyel  (University of Chicago). The biology of ovarian cancer (OvCa) is clearly distinct from that of most epithelial tumors, in that hematogenous metastases are rare, and ovarian tumors remain confined to the peritoneal cavity. The omentum, a large pad of fat tissue (20x13x3cm) covering the bowel, is the most common site of OvCa metastasis. It consists primarily of adipocytes, which become the principal microenvironment for the OvCa cells. The underlying hypothesis for this application is that, in the presence of adipocytes, the metabolism of OvCa cells is reprogramed and shifts towards lipid utilization, which provides energy that facilitates tumor growth and metastasis. Preliminary results suggest that primary human omental adipocytes secrete cytokines which promote the metastasis of OvCa cells to the omentum and their subsequent invasion. Once metastasis has occurred, OvCa cells induce lipolysis in omental adipocytes, and use the energy derived from these lipids to proliferate. To study the metabolic changes in the tumor microenvironment we have established a 3D organotypic culture of the human omentum using primary human cells established from patient tissue. Metabolic studies will be performed on adipocytes and OvCa cells individually, on conditioned media and on adipocytes and OvCa cells co-cultured in our 3D model, with the goal of arriving at a comprehensive analysis of primary metabolites and lipids in the tumor microenvironment. In the current investigation, untargeted analysis of primary metabolites and complex lipids were conducted on adipocytes and OvCa cells individually, on conditioned media and on adipocytes and OvCa cells co-cultured in our 3D model. Analysis of oxylipins was conducted on conditioned media. To gain better understanding of the dynamic regulation of metabolic pathways we will also perform metabolic flux analysis using labeled cells (13C-glucose, 13C-glutamine) in the 3D culture model. The primary objective of this study is to gain insight into the dynamic interactions between OvCa cells and human adipocytes with the anticipation of elucidating targets of therapeutic intervention.","INSTITUTE":"University of California, Davis","DEPARTMENT":"Genome and Biomedical Sciences Facility","LABORATORY":"WCMC Metabolomics Core","LAST_NAME":"Fiehn","FIRST_NAME":"Oliver","ADDRESS":"1315 Genome and Biomedical Sciences Facility,451 Health Sciences Drive, Davis, CA 95616","EMAIL":"ofiehn@ucdavis.edu","PHONE":"(530) 754-8258","FUNDING_SOURCE":"NIH U24DK097154","DOI":"http://dx.doi.org/10.21228/M82S3K"},

"STUDY":{"STUDY_TITLE":"A study of changes in lipid metabolism of ovarian cancer cells co-cultured with adipocytes: UPLC-QTRAP MS analysis","STUDY_TYPE":"Timecourse","STUDY_SUMMARY":"The study investigated the interaction between omental adipocytes and OvCa cells, as a follow up to preliminary data indicating this leads to reprograming of metabolic (especially lipid) profiles in both adipocytes and OvCa cells as ovarian cancer cells (OvCa) readily metastasize to the omental fat pad in the abdomen and stimulate the release of fatty acids. In order to mimic the interaction between OvCa and omental adipocytes during metastasis, a coculture system was used that employed OvCa cells and primary human adipocytes isolated from omentum. Human primary adipocytes were isolated from omental explants from patients undergoing surgery for benign conditions. After surgical removal, omental tissue was digested with collagenase I, and primary cultures of adipocytes were established, characterized, and incorporated into the co-culture. The primary adipocytes were isolated and co-cultured with the OvCa cell line Skov3ip1. In this current submission, the the samples will be collected at 4, 18 and 24 hour time points post co-culture to determine the time dependent effect on lipid mediators, including oxylipins and ceramides. The study results included in this DRCC submission were the 18 hour time point data for oxylipins and ceramides from targeted metabolomic analysis of lipid mediators performed by the Newman lab.","INSTITUTE":"University of California, Davis","DEPARTMENT":"U.S.D.A. Western Human Nutrition Research Center","LABORATORY":"Newman","LAST_NAME":"Newman","FIRST_NAME":"John","ADDRESS":"430 W. Health Sciences Dr., Davis, CA 95616","EMAIL":"john.newman@ars.usda.gov","PHONE":"+1-530-752-1009","SUBMIT_DATE":"2014-07-24"},

"SUBJECT":{"SUBJECT_TYPE":"Human cells","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","CELL_STRAIN_DETAILS":"SKOV3ip1","SUBJECT_COMMENTS":"p80, p85, p86, p89","CELL_PASSAGE_NUMBER":"p80, p85, p86, p89","CELL_COUNTS":"p80, p85, p86, p89","SPECIES_GROUP":"Human"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"Patient_1218",
"Sample ID":"S29A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p94","Patient":"1218","JWN ID":"LNG-22","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-22.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-22.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-22.mzML"}
},
{
"Subject ID":"Patient_1222",
"Sample ID":"S30A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p96","Patient":"1222","JWN ID":"LNG-16","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-16.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-16.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-16.mzML"}
},
{
"Subject ID":"Patient_1223",
"Sample ID":"S31A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p96","Patient":"1223","JWN ID":"LNG-12","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-12.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-12.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-12.mzML"}
},
{
"Subject ID":"Patient_1229",
"Sample ID":"S32A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p98","Patient":"1229","JWN ID":"LNG-17","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-17.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-17.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-17.mzML"}
},
{
"Subject ID":"Patient_1230",
"Sample ID":"S33A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p81","Patient":"1230","JWN ID":"LNG-24","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-24.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-24.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-24.mzML"}
},
{
"Subject ID":"Patient_1238",
"Sample ID":"S34A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p100","Patient":"1238","JWN ID":"LNG-25","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-25.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-25.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-25.mzML"}
},
{
"Subject ID":"Patient_1237",
"Sample ID":"S35A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p80","Patient":"1237","JWN ID":"LNG-15","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-15.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-15.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-15.mzML"}
},
{
"Subject ID":"Patient_1171",
"Sample ID":"S17A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p80","Patient":"#1171","JWN_ID":"A4-S17A","RAW_FILE_NAME":"Lengyal Pilot Oxys2-A4-S17A.mzML"}
},
{
"Subject ID":"Patient_1181",
"Sample ID":"S19A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p86","Patient":"#1181","JWN_ID":"A7-S19A","RAW_FILE_NAME":"Lengyal Pilot Oxys-A7-S19A.mzML"}
},
{
"Subject ID":"Patient_1182",
"Sample ID":"S20A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p86","Patient":"#1182","JWN_ID":"A11-S20A","RAW_FILE_NAME":"Lengyal Pilot Oxys2-A11-S20A.mzML"}
},
{
"Subject ID":"Patient_1193",
"Sample ID":"S23A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1193","JWN_ID":"B3-S23A","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B3-S23A.mzML"}
},
{
"Subject ID":"Patient_1194",
"Sample ID":"S24A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p85","Patient":"#1194","JWN_ID":"B6-S24A","RAW_FILE_NAME":"Lengyal Pilot Oxys-B6-S24A.mzML"}
},
{
"Subject ID":"Patient_1197",
"Sample ID":"S25A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1197","JWN_ID":"B9-S25A","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B9-S25A.mzML"}
},
{
"Subject ID":"Patient_1198",
"Sample ID":"S26A",
"Factors":{"Sample Type":"Adipocyte","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1198","JWN_ID":"B12-S26A","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B12-S26A.mzML"}
},
{
"Subject ID":"Patient_1218",
"Sample ID":"S29C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p94","Patient":"1218","JWN ID":"LNG-18 LNG-19","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-18.mzML Lengyal 18 hr Pilot Oxys r-LNG-19.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-18.mzML Lengyal 18 hr Pilot Endos-LNG-19.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-18.mzML Lengyal 18 hr Pilot Cer-LNG-19.mzML"}
},
{
"Subject ID":"Patient_1222",
"Sample ID":"S30C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p96","Patient":"1222","JWN ID":"LNG-14","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-14.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-14.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-14.mzML"}
},
{
"Subject ID":"Patient_1223",
"Sample ID":"S31C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p96","Patient":"1223","JWN ID":"LNG-21","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-21.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-21.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-21.mzML"}
},
{
"Subject ID":"Patient_1229",
"Sample ID":"S32C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p98","Patient":"1229","JWN ID":"LNG-28","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-28.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-28.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-28.mzML"}
},
{
"Subject ID":"Patient_1230",
"Sample ID":"S33C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p81","Patient":"1230","JWN ID":"LNG-9 LNG-10","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-9.mzML Lengyal 18 hr Pilot Oxys r-LNG-10.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-9.mzML Lengyal 18 hr Pilot Endos-LNG-10.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-9.mzML Lengyal 18 hr Pilot Cer-LNG-10.mzML"}
},
{
"Subject ID":"Patient_1238",
"Sample ID":"S34C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p100","Patient":"1238","JWN ID":"LNG-6","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-6.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-6.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-6.mzML"}
},
{
"Subject ID":"Patient_1237",
"Sample ID":"S35C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p80","Patient":"1237","JWN ID":"LNG-27","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-27.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-27.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-27.mzML"}
},
{
"Subject ID":"Patient_1171",
"Sample ID":"S17C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p80","Patient":"#1171","JWN_ID":"A6-S17C","RAW_FILE_NAME":"Lengyal Pilot Oxys2-A6-S17C.mzML"}
},
{
"Subject ID":"Patient_1181",
"Sample ID":"S19C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p86","Patient":"#1181","JWN_ID":"A9-S19C-1","RAW_FILE_NAME":"Lengyal Pilot Oxys-A9-S19C-1.mzML"}
},
{
"Subject ID":"Patient_1182",
"Sample ID":"S20C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p86","Patient":"#1182","JWN_ID":"A13-S20C-1","RAW_FILE_NAME":"Lengyal Pilot Oxys2-A13-S20-C-1.mzML"}
},
{
"Subject ID":"Patient_1193",
"Sample ID":"S23C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1193","JWN_ID":"B5-S23C","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B5-S23C.mzML"}
},
{
"Subject ID":"Patient_1194",
"Sample ID":"S24C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p85","Patient":"#1194","JWN_ID":"B8-S24C","RAW_FILE_NAME":"Lengyal Pilot Oxys-B8-S24C.mzML"}
},
{
"Subject ID":"Patient_1197",
"Sample ID":"S25C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1197","JWN_ID":"B11-S25C","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B11-S25C.mzML"}
},
{
"Subject ID":"Patient_1198",
"Sample ID":"S26C",
"Factors":{"Sample Type":"Co-culture","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1198","JWN_ID":"B14-S26C-1","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B14-S26C-1.mzML"}
},
{
"Subject ID":"Patient_1218",
"Sample ID":"S29B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p94","Patient":"1218","JWN ID":"LNG-20","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-20.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-20.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-20.mzML"}
},
{
"Subject ID":"Patient_1222",
"Sample ID":"S30B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p96","Patient":"1222","JWN ID":"LNG-23","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-23.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-23.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-23.mzML"}
},
{
"Subject ID":"Patient_1223",
"Sample ID":"S31B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p96","Patient":"1223","JWN ID":"LNG-13","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-13.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-13.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-13.mzML"}
},
{
"Subject ID":"Patient_1229",
"Sample ID":"S32B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p98","Patient":"1229","JWN ID":"LNG-26","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-26.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-26.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-26.mzML"}
},
{
"Subject ID":"Patient_1230",
"Sample ID":"S33B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p81","Patient":"1230","JWN ID":"LNG-11","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-11.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-11.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-11.mzML"}
},
{
"Subject ID":"Patient_1238",
"Sample ID":"S34B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p100","Patient":"1238","JWN ID":"LNG-7","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-7.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-7.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-7.mzML"}
},
{
"Subject ID":"Patient_1237",
"Sample ID":"S35B",
"Factors":{"Sample Type":"Control","Timepoint":"18 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p80","Patient":"1237","JWN ID":"LNG-8","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-8.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-8.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-8.mzML"}
},
{
"Subject ID":"Patient_1171",
"Sample ID":"S17B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p80","Patient":"#1171","JWN_ID":"A5-S17B","RAW_FILE_NAME":"Lengyal Pilot Oxys-A5-S17B.mzML"}
},
{
"Subject ID":"Patient_1181",
"Sample ID":"S19B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p86","Patient":"#1181","JWN_ID":"A8-S19B","RAW_FILE_NAME":"Lengyal Pilot Oxys2-A8-S19B.mzML"}
},
{
"Subject ID":"Patient_1182",
"Sample ID":"S20B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p86","Patient":"#1182","JWN_ID":"A12-S20B","RAW_FILE_NAME":"Lengyal Pilot Oxys2-A12-S20B.mzML"}
},
{
"Subject ID":"Patient_1193",
"Sample ID":"S23B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1193","JWN_ID":"B4-S23B","RAW_FILE_NAME":"Lengyal Pilot Oxys-B4-S23B.mzML"}
},
{
"Subject ID":"Patient_1194",
"Sample ID":"S24B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p85","Patient":"#1194","JWN_ID":"B7-S24B","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B7-S24B.mzML"}
},
{
"Subject ID":"Patient_1197",
"Sample ID":"S25B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1197","JWN_ID":"B10-S25B","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B10-S25B.mzML"}
},
{
"Subject ID":"Patient_1198",
"Sample ID":"S26B",
"Factors":{"Sample Type":"Control","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"p89","Patient":"#1198","JWN_ID":"B13-S26B","RAW_FILE_NAME":"Lengyal Pilot Oxys2-B13-S26B.mzML"}
},
{
"Subject ID":"-",
"Sample ID":"Media blank",
"Factors":{"Sample Type":"Media blank","Timepoint":"4 hours"},
"Additional sample data":{"SKOV3ip1 passage":"Media blank","Patient":"Media blank","JWN_ID":"Media blank","RAW_FILE_NAME":"Lengyal Pilot Oxys-A3-Blank Med.mzML"}
},
{
"Subject ID":"-",
"Sample ID":"Blank media",
"Factors":{"Sample Type":"Media blank","Timepoint":"NA"},
"Additional sample data":{"SKOV3ip1 passage":"-","Patient":"-","JWN ID":"LNG-3 LNG-4 LNG-5","RAW_FILE_NAME":"(Oxylipin data)Lengyal 18 hr Pilot Oxys r-LNG-3.mzML Lengyal 18 hr Pilot Oxys r-LNG-4.mzML Lengyal 18 hr Pilot Oxys r-LNG-5.mzML","File name (Ceramide data)":"Lengyal 18 hr Pilot Endos-LNG-3.mzML Lengyal 18 hr Pilot Endos-LNG-4.mzML Lengyal 18 hr Pilot Endos-LNG-5.mzML","File name (Endocannabinoid data)":"Lengyal 18 hr Pilot Cer-LNG-3.mzML Lengyal 18 hr Pilot Cer-LNG-4.mzML Lengyal 18 hr Pilot Cer-LNG-5.mzML"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Samples were collected at 18 hours post co-culture","COLLECTION_PROTOCOL_FILENAME":"Newman_Lab_Oxylipin_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_18hr.pdf;Newman_Lab_Ceramide_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_18hr.pdf;Newman_Lab_Enpdfannabinoid_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_18hr.pdf;Newman_Lab_Oxylipin_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_4hr.pdf;Newman_Lab_Ceramide_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_4hr.pdf","SAMPLE_TYPE":"Media","STORAGE_CONDITIONS":"-80 C"},

"TREATMENT":{"TREATMENT_SUMMARY":"The study investigated the interaction between omental adipocytes and OvCa cells, as a follow up to preliminary data indicating this leads to reprograming of metabolic (especially lipid) profiles in both adipocytes and OvCa cells as ovarian cancer cells (OvCa) readily metastasize to the omental fat pad in the abdomen and stimulate the release of fatty acids. In order to mimic the interaction between OvCa and omental adipocytes during metastasis, a coculture system was used that employed OvCa cells and primary human adipocytes isolated from omentum. Human primary adipocytes were isolated from omental explants from patients undergoing surgery for benign conditions. After surgical removal, omental tissue was digested with collagenase I, and primary cultures of adipocytes were established, characterized, and incorporated into the co-culture. The primary adipocytes were isolated and co-cultured with the OvCa cell line Skov3ip1. In this current submission, the the samples will be collected at 4, 18 and 24 hour time points post co-culture to determine the time dependent effect on lipid mediators, including oxylipins and ceramides. The study results included in this DRCC submission were the 18 hour time point data for oxylipins and ceramides.","TREATMENT_PROTOCOL_FILENAME":"Newman_Lab_Oxylipin_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_18hr.pdf;Newman_Lab_Ceramide_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_18hr.pdf;Newman_Lab_Enpdfannabinoid_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_18hr.pdf;Newman_Lab_Oxylipin_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_4hr.pdf;Newman_Lab_Ceramide_Extraction_&_Analysis_Protocol_Lengyel_WCMC_P&F_4hr.pdf","CELL_STORAGE":"-80 C"},

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