{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000171","ANALYSIS_ID":"AN000265","VERSION":"1","CREATED_ON":"2016-09-17"},

"PROJECT":{"PROJECT_TITLE":"trcp","PROJECT_SUMMARY":"metabolic phenotypes of a clock mutant mouse","INSTITUTE":"Florida State University","DEPARTMENT":"Biomedical Sciences","LABORATORY":"Lee Lab","LAST_NAME":"Lee","FIRST_NAME":"Choogon","ADDRESS":"Tallahassee, FL","EMAIL":"choogon.lee@med.fsu.edu","PHONE":"850-645-1478"},

"STUDY":{"STUDY_TITLE":"cell metabolomics (metabolic phenotypes of a clock mutant mouse)","STUDY_SUMMARY":"-","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-","NUM_GROUPS":"11","TOTAL_SUBJECTS":"11"},

"SUBJECT":{"SUBJECT_TYPE":"-","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0003080",
"Sample ID":"S00013516",
"Factors":{"Type":"control"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013518",
"Factors":{"Type":"control cell1"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013519",
"Factors":{"Type":"control cell2"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013520",
"Factors":{"Type":"control cell3"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013521",
"Factors":{"Type":"control cell4"}
},
{
"Subject ID":"SU0003080",
"Sample ID":"S00013517",
"Factors":{"Type":"ko"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013522",
"Factors":{"Type":"ko cell1"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013523",
"Factors":{"Type":"ko cell2"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013524",
"Factors":{"Type":"ko cell3"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013525",
"Factors":{"Type":"ko cell4"}
},
{
"Subject ID":"SU0003080",
"Sample ID":"S00013515",
"Factors":{"Type":"starting medium"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Fibroblasts"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"Gly-TCA-nucleotides_analysis_protocol-2015-03-09.docx"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"-","COLUMN_NAME":"Agilent DB5-MS (30m × 0.25mm, 0.25um)","METHODS_ID":"AQM011","METHODS_FILENAME":"ALPHA_KETO_ACIDS-FULL.M.zip"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"MRC2 (University of Michigan)","ACQUISITION_PARAMETERS_FILE":"ALPHA_KETO_ACIDS-FULL.M.zip","PROCESSING_PARAMETERS_FILE":"EX00266-MassHunterQuant-GlyTCA-GCMS-DataAnalysis-Method.m.zip"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975C","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"µM",

"Data":[{"Metabolite":"2 or 3-phosphoglycerate","S00013518":"","S00013519":"","S00013520":"","S00013521":"","S00013522":"0.0972","S00013523":"","S00013524":"0.0186","S00013525":"0.0239"},{"Metabolite":"6-phosphogluconate","S00013518":"0.3680","S00013519":"0.0805","S00013520":"0.0461","S00013521":"0.0454","S00013522":"0.1822","S00013523":"0.2316","S00013524":"0.1934","S00013525":"0.2437"},{"Metabolite":"acetyl-coa","S00013518":"0.2057","S00013519":"0.1593","S00013520":"0.1796","S00013521":"0.1868","S00013522":"0.3123","S00013523":"0.2583","S00013524":"0.3531","S00013525":"0.2836"},{"Metabolite":"adenosine diphosphate","S00013518":"0.9630","S00013519":"0.8885","S00013520":"1.0622","S00013521":"1.0222","S00013522":"1.7035","S00013523":"1.3455","S00013524":"1.4525","S00013525":"1.4828"},{"Metabolite":"adenosine monophosphate","S00013518":"0.0698","S00013519":"0.1435","S00013520":"0.1638","S00013521":"0.1547","S00013522":"0.4375","S00013523":"0.4072","S00013524":"0.4163","S00013525":"0.2983"},{"Metabolite":"adenosine triphosphate","S00013518":"14.4322","S00013519":"15.9190","S00013520":"17.9238","S00013521":"15.2905","S00013522":"23.6742","S00013523":"22.4483","S00013524":"25.9686","S00013525":"22.7471"},{"Metabolite":"citrate or isocitrate","S00013518":"2.2294","S00013519":"2.4726","S00013520":"2.4285","S00013521":"2.5050","S00013522":"6.1181","S00013523":"5.8808","S00013524":"6.6044","S00013525":"6.0913"},{"Metabolite":"flavin adenine dinucleotide","S00013518":"0.0178","S00013519":"0.0107","S00013520":"0.0312","S00013521":"0.0750","S00013522":"0.0358","S00013523":"0.0500","S00013524":"0.0308","S00013525":"0.0355"},{"Metabolite":"fructose 1_6-bisphosphate","S00013518":"7.0108","S00013519":"3.7035","S00013520":"3.1173","S00013521":"3.1944","S00013522":"36.1744","S00013523":"35.1907","S00013524":"35.6044","S00013525":"39.4195"},{"Metabolite":"glucose 6-phosphate or fructose-6-phosphate","S00013518":"0.0315","S00013519":"0.1766","S00013520":"0.1592","S00013521":"0.0167","S00013522":"0.3898","S00013523":"0.2122","S00013524":"0.4393","S00013525":"0.3649"},{"Metabolite":"malate","S00013518":"4.7003","S00013519":"4.7096","S00013520":"4.6820","S00013521":"4.7766","S00013522":"7.8022","S00013523":"6.6793","S00013524":"7.2245","S00013525":"6.6919"},{"Metabolite":"nicotinamide adenine dinucleotide oxidized","S00013518":"1.2160","S00013519":"1.3605","S00013520":"1.3885","S00013521":"1.4718","S00013522":"1.5464","S00013523":"1.2167","S00013524":"1.4910","S00013525":"1.4244"},{"Metabolite":"nicotinamide adenine dinucleotide phosphate oxidized","S00013518":"0.2364","S00013519":"0.1212","S00013520":"0.1226","S00013521":"0.0958","S00013522":"0.1024","S00013523":"0.0954","S00013524":"0.1281","S00013525":"0.0900"},{"Metabolite":"nicotinamide adenine dinucleotide phosphate reduced","S00013518":"0.6592","S00013519":"0.6883","S00013520":"0.7461","S00013521":"0.7604","S00013522":"0.8544","S00013523":"0.8034","S00013524":"0.7863","S00013525":"0.9147"},{"Metabolite":"nicotinamide adenine dinucleotide reduced","S00013518":"0.0000","S00013519":"","S00013520":"","S00013521":"","S00013522":"0.4412","S00013523":"0.7989","S00013524":"0.7410","S00013525":"0.7581"},{"Metabolite":"phosphoenolpyruvate","S00013518":"","S00013519":"","S00013520":"","S00013521":"0.0408","S00013522":"","S00013523":"","S00013524":"","S00013525":"0.0348"},{"Metabolite":"sucrose","S00013518":"2.7521","S00013519":"2.9907","S00013520":"2.7065","S00013521":"2.4520","S00013522":"3.9054","S00013523":"3.9293","S00013524":"4.8743","S00013525":"3.9060"}],

"Metabolites":[{"Metabolite":"2 or 3-phosphoglycerate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"724","inchi_key":"","kegg_id":"","other_id":"2PG/3PG","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"6-phosphogluconate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"91493","inchi_key":"","kegg_id":"","other_id":"6PG","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"acetyl-coa","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"444493","inchi_key":"","kegg_id":"","other_id":"aCoA","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"adenosine diphosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6022","inchi_key":"","kegg_id":"","other_id":"ADP","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"adenosine monophosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6083","inchi_key":"","kegg_id":"","other_id":"AMP","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"adenosine triphosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5957","inchi_key":"","kegg_id":"","other_id":"ATP","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"citrate or isocitrate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"311","inchi_key":"","kegg_id":"","other_id":"CIT/ICIT","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"flavin adenine dinucleotide","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"46906035","inchi_key":"","kegg_id":"","other_id":"FAD","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"fructose 1,6-bisphosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"21125049","inchi_key":"","kegg_id":"","other_id":"FBP","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"glucose 6-phosphate or fructose-6-phosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5958","inchi_key":"","kegg_id":"","other_id":"G6P/F6P","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"malate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"525","inchi_key":"","kegg_id":"","other_id":"MAL","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"nicotinamide adenine dinucleotide oxidized","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"15938971","inchi_key":"","kegg_id":"","other_id":"NAD","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"nicotinamide adenine dinucleotide phosphate oxidized","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"15938972","inchi_key":"","kegg_id":"","other_id":"NADP","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"nicotinamide adenine dinucleotide phosphate reduced","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"22833512","inchi_key":"","kegg_id":"","other_id":"NADPH","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"nicotinamide adenine dinucleotide reduced","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"439153","inchi_key":"","kegg_id":"","other_id":"NADH","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"phosphoenolpyruvate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1005","inchi_key":"","kegg_id":"","other_id":"PEP","other_id_type":"UFLORIDA_Lee_Lab"},{"Metabolite":"sucrose","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5988","inchi_key":"","kegg_id":"","other_id":"SUC","other_id_type":"UFLORIDA_Lee_Lab"}]
}

}