{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000176","ANALYSIS_ID":"AN000271","VERSION":"1","CREATED_ON":"01-15-2019"},

"PROJECT":{"PROJECT_TITLE":"trcp","PROJECT_SUMMARY":"metabolic phenotypes of a clock mutant mouse","INSTITUTE":"Florida State University","DEPARTMENT":"Biomedical Sciences","LABORATORY":"Lee Lab","LAST_NAME":"Lee","FIRST_NAME":"Choogon","ADDRESS":"Tallahassee, FL","EMAIL":"choogon.lee@med.fsu.edu","PHONE":"850-645-1478","DOI":"http://dx.doi.org/10.21228/M8V011"},

"STUDY":{"STUDY_TITLE":"cell and liver metabolomics","STUDY_SUMMARY":"(Pending) Liver samples were harvested from wt and ko mice. Quadruplicates and triplicates are sent for cells and liver, respectively.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","SPECIES_GROUP":"Mammal"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0004026",
"Sample ID":"S00014600",
"Factors":{"genotype":"background","Type":"liver"}
},
{
"Subject ID":"SU0004027",
"Sample ID":"S00014601",
"Factors":{"genotype":"background","Type":"liver"}
},
{
"Subject ID":"SU0004028",
"Sample ID":"S00014602",
"Factors":{"genotype":"background","Type":"liver"}
},
{
"Subject ID":"SU0004032",
"Sample ID":"S00014606",
"Factors":{"genotype":"background","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004033",
"Sample ID":"S00014607",
"Factors":{"genotype":"background","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004034",
"Sample ID":"S00014608",
"Factors":{"genotype":"background","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004035",
"Sample ID":"S00014609",
"Factors":{"genotype":"background","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004029",
"Sample ID":"S00014603",
"Factors":{"genotype":"knock-out","Type":"liver"}
},
{
"Subject ID":"SU0004030",
"Sample ID":"S00014604",
"Factors":{"genotype":"knock-out","Type":"liver"}
},
{
"Subject ID":"SU0004031",
"Sample ID":"S00014605",
"Factors":{"genotype":"knock-out","Type":"liver"}
},
{
"Subject ID":"SU0004036",
"Sample ID":"S00014610",
"Factors":{"genotype":"knock-out","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004037",
"Sample ID":"S00014611",
"Factors":{"genotype":"knock-out","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004038",
"Sample ID":"S00014612",
"Factors":{"genotype":"knock-out","Type":"MFE Cells"}
},
{
"Subject ID":"SU0004039",
"Sample ID":"S00014613",
"Factors":{"genotype":"knock-out","Type":"MFE Cells"}
}
],
"COLLECTION":{"SAMPLE_TYPE":"Cells","COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_PROTOCOL_FILENAME":"Gly-TCA-nucleotides_analysis_protocol-2015-03-09.docx","SAMPLEPREP_SUMMARY":"-"},

"CHROMATOGRAPHY":{"METHODS_ID":"AQM011","METHODS_FILENAME":"ALPHA_KETO_ACIDS-FULL.M.zip","INSTRUMENT_NAME":"Agilent 7890A","COLUMN_NAME":"Agilent DB5-MS (30m × 0.25mm, 0.25um)","CHROMATOGRAPHY_TYPE":"GC"},

"ANALYSIS":{"LABORATORY_NAME":"MRC2 (University of Michigan)","ANALYSIS_TYPE":"MS","ACQUISITION_PARAMETERS_FILE":"ALPHA_KETO_ACIDS-FULL.M.zip"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975C","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"SUC",

"Data":[{"Metabolite":"2 or 3-phosphoglycerate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"6-phosphogluconate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"acetyl-coa","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"adenosine diphosphate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"adenosine monophosphate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"adenosine triphosphate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"citrate or isocitrate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"flavin adenine dinucleotide","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"fructose 1_6-bisphosphate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"glucose 6-phosphate or fructose-6-phosphate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"malate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"nicotinamide adenine dinucleotide oxidized","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"nicotinamide adenine dinucleotide phosphate oxidized","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"nicotinamide adenine dinucleotide phosphate reduced","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"nicotinamide adenine dinucleotide reduced","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"phosphoenolpyruvate","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""},{"Metabolite":"sucrose","S00014600":"","S00014601":"","S00014602":"","S00014606":"","S00014607":"","S00014608":"","S00014609":"","S00014603":"","S00014604":"","S00014605":"","S00014610":"","S00014611":"","S00014612":"","S00014613":""}],

"Metabolites":[{"Metabolite":"2 or 3-phosphoglycerate","pubchem_id":"724","inchi_key":"","kegg_id":"C00597","other_id":"2PG/3PG","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"6-phosphogluconate","pubchem_id":"91493","inchi_key":"","kegg_id":"C00345","other_id":"6PG","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"acetyl-coa","pubchem_id":"444493","inchi_key":"","kegg_id":"C00024","other_id":"aCoA","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"adenosine diphosphate","pubchem_id":"6022","inchi_key":"","kegg_id":"C00008","other_id":"ADP","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"adenosine monophosphate","pubchem_id":"6083","inchi_key":"","kegg_id":"C00020","other_id":"AMP","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"adenosine triphosphate","pubchem_id":"5957","inchi_key":"","kegg_id":"C00002","other_id":"ATP","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"citrate or isocitrate","pubchem_id":"311","inchi_key":"","kegg_id":"C00158","other_id":"CIT/ICIT","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"flavin adenine dinucleotide","pubchem_id":"643975","inchi_key":"","kegg_id":"C00016","other_id":"FAD","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"fructose 1,6-bisphosphate","pubchem_id":"172313","inchi_key":"","kegg_id":"C00354","other_id":"FBP","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"glucose 6-phosphate or fructose-6-phosphate","pubchem_id":"5958","inchi_key":"","kegg_id":"C00092","other_id":"G6P/F6P","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"malate","pubchem_id":"222656","inchi_key":"","kegg_id":"C00149","other_id":"MAL","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"nicotinamide adenine dinucleotide oxidized","pubchem_id":"10897651","inchi_key":"","kegg_id":"C00003","other_id":"NAD","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"nicotinamide adenine dinucleotide phosphate oxidized","pubchem_id":"5886","inchi_key":"","kegg_id":"C00006","other_id":"NADP","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"nicotinamide adenine dinucleotide phosphate reduced","pubchem_id":"5886","inchi_key":"","kegg_id":"C00006","other_id":"NADPH","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"nicotinamide adenine dinucleotide reduced","pubchem_id":"439153","inchi_key":"","kegg_id":"C00004","other_id":"NADH","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"phosphoenolpyruvate","pubchem_id":"1005","inchi_key":"","kegg_id":"C00074","other_id":"PEP","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""},{"Metabolite":"sucrose","pubchem_id":"5988","inchi_key":"","kegg_id":"C00089","other_id":"SUC","other_id_type":"UFLORIDA_Lee_Lab","ri":"","ri_type":"","moverz_quant":"","":""}]
}

}