{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000182","ANALYSIS_ID":"AN000280","VERSION":"1","CREATED_ON":"2016-09-17"},

"PROJECT":{"PROJECT_TITLE":"Bone Marrow Studies","PROJECT_SUMMARY":"Assessing if there is a difference between groups","INSTITUTE":"University of Michigan","DEPARTMENT":"Pedatric Endocrinology","LABORATORY":"Singer Lab","LAST_NAME":"Singer","FIRST_NAME":"Kanakadurga","ADDRESS":"Ann Arbor, MI","EMAIL":"ksinger@umich.edu","PHONE":"734-764-5175"},

"STUDY":{"STUDY_TITLE":"Bone Marrow Metabolomics (part I)","STUDY_TYPE":"Looking for differences between groups.","STUDY_SUMMARY":"Looking for differences between groups.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-","NUM_GROUPS":"4","TOTAL_SUBJECTS":"16"},

"SUBJECT":{"SUBJECT_TYPE":"-","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0004432",
"Sample ID":"S00015381",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"N"}
},
{
"Subject ID":"SU0004433",
"Sample ID":"S00015382",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"N"}
},
{
"Subject ID":"SU0004434",
"Sample ID":"S00015383",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"N"}
},
{
"Subject ID":"SU0004435",
"Sample ID":"S00015384",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"N"}
},
{
"Subject ID":"SU0004440",
"Sample ID":"S00015389",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"Y"}
},
{
"Subject ID":"SU0004441",
"Sample ID":"S00015390",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"Y"}
},
{
"Subject ID":"SU0004442",
"Sample ID":"S00015391",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"Y"}
},
{
"Subject ID":"SU0004443",
"Sample ID":"S00015392",
"Factors":{"Diet (Normal or High Fat)":"HF","KW":"Y"}
},
{
"Subject ID":"SU0004428",
"Sample ID":"S00015377",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"N"}
},
{
"Subject ID":"SU0004429",
"Sample ID":"S00015378",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"N"}
},
{
"Subject ID":"SU0004430",
"Sample ID":"S00015379",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"N"}
},
{
"Subject ID":"SU0004431",
"Sample ID":"S00015380",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"N"}
},
{
"Subject ID":"SU0004436",
"Sample ID":"S00015385",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"Y"}
},
{
"Subject ID":"SU0004437",
"Sample ID":"S00015386",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"Y"}
},
{
"Subject ID":"SU0004438",
"Sample ID":"S00015387",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"Y"}
},
{
"Subject ID":"SU0004439",
"Sample ID":"S00015388",
"Factors":{"Diet (Normal or High Fat)":"N","KW":"Y"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Bone Marrow"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"Gly-TCA-nucleotides_analysis_protocol-2015-03-09.docx"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"HILIC","INSTRUMENT_NAME":"Agilent 1260","COLUMN_NAME":"Phenomenex Luna NH2 (150 x 1mm, 3um)","METHODS_ID":"AQM020","METHODS_FILENAME":"QTOF-002-HILIC-35min-1mm.m.zip"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"MRC2 (University of Michigan)","ACQUISITION_PARAMETERS_FILE":"QTOF-002-HILIC-35min-1mm.m.zip","PROCESSING_PARAMETERS_FILE":"EX00327-MassHunterQuant-GlyTCA-DataAnalysis-LCMS-Method.m.zip"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6530 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"µM (100µg/ml protein per sample)",

"Data":[{"Metabolite":"2 or 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"Metabolites":[{"Metabolite":"2 or 3-phosphoglycerate_2PG/3PG","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"724","inchi_key":"","kegg_id":"","other_id":"2PG/3PG","other_id_type":"UM_Target_ID"},{"Metabolite":"6-Phosphogluconate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"91493","inchi_key":"","kegg_id":"","other_id":"6PG","other_id_type":"UM_Target_ID"},{"Metabolite":"Acetyl-CoA","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"444493","inchi_key":"","kegg_id":"","other_id":"aCoA","other_id_type":"UM_Target_ID"},{"Metabolite":"ADP","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6022","inchi_key":"","kegg_id":"","other_id":"ADP","other_id_type":"UM_Target_ID"},{"Metabolite":"AMP","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6083","inchi_key":"","kegg_id":"","other_id":"AMP","other_id_type":"UM_Target_ID"},{"Metabolite":"ATP","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5957","inchi_key":"","kegg_id":"","other_id":"ATP","other_id_type":"UM_Target_ID"},{"Metabolite":"Citrate or Isocitrate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"311","inchi_key":"","kegg_id":"","other_id":"CIT/ICIT","other_id_type":"UM_Target_ID"},{"Metabolite":"Erythrose 4-phosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"122357","inchi_key":"","kegg_id":"","other_id":"E4P","other_id_type":"UM_Target_ID"},{"Metabolite":"flavin adenine dinucleotide","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"46906035","inchi_key":"","kegg_id":"","other_id":"FAD","other_id_type":"UM_Target_ID"},{"Metabolite":"Fructose 1,6-bisphosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"21125049","inchi_key":"","kegg_id":"","other_id":"FBP","other_id_type":"UM_Target_ID"},{"Metabolite":"Glucose 6-phosphate or fructose-6-phosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5958","inchi_key":"","kegg_id":"","other_id":"G6P/F6P","other_id_type":"UM_Target_ID"},{"Metabolite":"Malate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"525","inchi_key":"","kegg_id":"","other_id":"MAL","other_id_type":"UM_Target_ID"},{"Metabolite":"Nicotinamide Adenine Dinucleotide oxidized","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"15938971","inchi_key":"","kegg_id":"","other_id":"NAD","other_id_type":"UM_Target_ID"},{"Metabolite":"nicotinamide adenine dinucleotide phosphate oxidized","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"15938972","inchi_key":"","kegg_id":"","other_id":"NADP","other_id_type":"UM_Target_ID"},{"Metabolite":"nicotinamide adenine dinucleotide phosphate reduced","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"22833512","inchi_key":"","kegg_id":"","other_id":"NADPH","other_id_type":"UM_Target_ID"},{"Metabolite":"Nicotinamide Adenine Dinucleotide reduced","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"439153","inchi_key":"","kegg_id":"","other_id":"NADH","other_id_type":"UM_Target_ID"},{"Metabolite":"Phosphoenolpyruvate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1005","inchi_key":"","kegg_id":"","other_id":"PEP","other_id_type":"UM_Target_ID"},{"Metabolite":"Ribose-5-phosphate or xylulose 5-phosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"77982","inchi_key":"","kegg_id":"","other_id":"R5P/X5P","other_id_type":"UM_Target_ID"},{"Metabolite":"Sedoheptulose 7-phosphate","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"165007","inchi_key":"","kegg_id":"","other_id":"S7P","other_id_type":"UM_Target_ID"},{"Metabolite":"Sucrose","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5988","inchi_key":"","kegg_id":"","other_id":"SUC","other_id_type":"UM_Target_ID"}]
}

}