{ "METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000225","ANALYSIS_ID":"AN000335","VERSION":"1","CREATED_ON":"10-02-2015"}, "PROJECT":{"PROJECT_TITLE":"Aryl Hydrocarbon Receptor Activation by Persistent Organic Pollutants Impacts Gut Microbiota-Host Metabolic Homeostasis in Mice","INSTITUTE":"Pennsylvania State University","DEPARTMENT":"Molecular Toxicology","LAST_NAME":"Andrew","FIRST_NAME":"Patterson","EMAIL":"adp117@PSU.EDU, RGN5011@psu.edu","PROJECT_SUMMARY":"-","PHONE":"-","ADDRESS":"-"}, "STUDY":{"STUDY_TITLE":"Aryl Hydrocarbon Receptor Activation by Persistent Organic Pollutants Impacts Gut Microbiota-Host Metabolic Homeostasis in Mice","STUDY_TYPE":"drug dosage","STUDY_SUMMARY":"Mice were dosed with TCDF for 5 days","INSTITUTE":"Pennsylvania State University","DEPARTMENT":"Molecular Toxicology","LAST_NAME":"Patterson","FIRST_NAME":"Andrew","EMAIL":"adp117@PSU.EDU","PHONE":"-","ADDRESS":"-"}, "SUBJECT":{"SUBJECT_TYPE":"mouse","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENOTYPE_STRAIN":"C57BL/6J; Wild Type and Ahr-/-","AGE_OR_AGE_RANGE":"6 weeks old","GENDER":"Males"}, "SUBJECT_SAMPLE_FACTORS":[ { "Subject ID":"-", "Sample ID":"Control cecal content", "Factors":{"Gender":"Male","Genotype":"Control"} }, { "Subject ID":"-", "Sample ID":"Control fecal", "Factors":{"Gender":"Male","Genotype":"Control"} }, { "Subject ID":"-", "Sample ID":"Control Liver", "Factors":{"Gender":"Male","Genotype":"Control"} }, { "Subject ID":"-", "Sample ID":"Treated Cecal Content", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} }, { "Subject ID":"-", "Sample ID":"Treated Cecum", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} }, { "Subject ID":"-", "Sample ID":"Treated Duodenum", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} }, { "Subject ID":"-", "Sample ID":"Treated Fecal", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} }, { "Subject ID":"-", "Sample ID":"Treated Ileum", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} }, { "Subject ID":"-", "Sample ID":"Treated Jejunum", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} }, { "Subject ID":"-", "Sample ID":"Treated Liver", "Factors":{"Gender":"Male","Genotype":"Tcdf Treated"} } ], "COLLECTION":{"SAMPLE_TYPE":"Feces, liver, cecal contents, and intestine","COLLECTION_SUMMARY":"-"}, "TREATMENT":{"TREATMENT_SUMMARY":"Wild type and AHR knock out mice (5-6 per group) were treated with TCDF for 5 days","TREATMENT":"Dietary","TREATMENT_COMPOUND":"TCDF","TREATMENT_ROUTE":"Oral","TREATMENT_DOSE":"24 µg/kg body weight"}, "SAMPLEPREP":{"SAMPLEPREP_PROTOCOL_FILENAME":"NMR_metabolomics_protocol.docx","PROCESSING_METHOD":"Homogenization","PROCESSING_STORAGE_CONDITIONS":"-20","EXTRACTION_METHOD":"Methanol/Water","SAMPLE_RESUSPENSION":"D2O","SAMPLE_SPIKING":"TSP-d4","ORGAN":"Liver, small and large intestine","SAMPLEPREP_SUMMARY":"-"}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"-","INSTRUMENT_NAME":"-","COLUMN_NAME":"-"}, "ANALYSIS":{"ANALYSIS_TYPE":"NMR"}, "NM":{"INSTRUMENT_TYPE":"Bruker Avance III 600 MHz spectrometer","NMR_EXPERIMENT_TYPE":"NOESY PR1D","SPECTROMETER_FREQUENCY":"600 MHz","NMR_SOLVENT":"D2O","INSTRUMENT_NAME":"Bruker Avance III"} }