{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000244","ANALYSIS_ID":"AN000381","VERSION":"1","CREATED_ON":"2016-09-17"},

"PROJECT":{"PROJECT_TITLE":"Metabolomic Diagnostics in the Horse","PROJECT_SUMMARY":"In this project we will investigate the feasibility of metabolomics and to the diversity of ?metabotypes? in the horse, towards discovery of markers and associated with obesity and insulin resistance in the equine model. The team of researchers assembled for this work have identified horses severely with Equine Metabolic syndrome, often characterized by obesity and These animals are all from the Arabian breed, to control for some genetic Horses are age, sex and farm of residence matched with a control animal possible. Carefully controlled collection protocols were utilized to ensure variability in sample age and quality. Blood plasma is submitted for both LC-MS analysis through the SECIM core facilities. This discovery-based approach begin to generate new targets for the development of novel therapeutic for the treatment and prevention of obesity, type-2 diabetes as well as related conditions in both humans and horses. Finally, as the first dataset of its kind the horse, we may also be able to highlight promising new biomarkers for diagnostic use.","INSTITUTE":"University of Florida","LABORATORY":"Brooks Lab","LAST_NAME":"Brooks","FIRST_NAME":"Samantha","ADDRESS":"-","EMAIL":"samantha.brooks@ufl.edu","PHONE":"352-273-8080","FUNDING_SOURCE":"Southeastern Center for Integrated Metabolomics (SECIM) pilot and feasibility NIH U24 DK097209"},

"STUDY":{"STUDY_TITLE":"Metabolomic Diagnosis in Horse","STUDY_TYPE":"comparison","STUDY_SUMMARY":"In this project we will investigate the feasibility of metabolomics and to the diversity of ?metabotypes? in the horse, towards discovery of markers and associated with obesity and insulin resistance in the equine model. The team of researchers assembled for this work have identified horses severely with Equine Metabolic syndrome, often characterized by obesity and These animals are all from the Arabian breed, to control for some genetic Horses are age, sex and farm of residence matched with a control animal possible. Carefully controlled collection protocols were utilized to ensure variability in sample age and quality. Blood plasma is submitted for both LC-MS analysis through the SECIM core facilities. This discovery-based approach begin to generate new targets for the development of novel therapeutic for the treatment and prevention of obesity, type-2 diabetes as well as related conditions in both humans and horses. Finally, as the first dataset of its kind the horse, we may also be able to highlight promising new biomarkers for diagnostic use.","INSTITUTE":"University of Florida","LAST_NAME":"Brooks","FIRST_NAME":"Samantha","ADDRESS":"-","EMAIL":"samantha.brooks@ufl.edu","PHONE":"-","NUM_GROUPS":"3","TOTAL_SUBJECTS":"51"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Equus caballus","TAXONOMY_ID":"9796","GENOTYPE_STRAIN":"Arabian","SPECIES_GROUP":"Mammal"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"2268",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"12","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2204",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"13","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2227",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"13","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2223",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2241",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"16","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2232",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"17","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2244",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"21","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2267",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"21","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2245",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"24","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2214",
"Factors":{"Treatment":"Control","Gender":"Female"},
"Additional sample data":{"Age":"31","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2222",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"10","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2253",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"12","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2250",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"15","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2256",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"18","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2205",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"20","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2209",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"21","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2233",
"Factors":{"Treatment":"Control","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"9","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2212",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"10","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2215",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"12","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2221",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"13","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2217",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2226",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2255",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2265",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2229",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"15","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2242",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"19","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2243",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"19","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2246",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"23","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2274",
"Factors":{"Treatment":"EMS","Gender":"Female"},
"Additional sample data":{"Age":"23","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2270",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"10","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2235",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2266",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2228",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"16","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2247",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"17","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2257",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"17","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2219",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"22","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2239",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"25","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2271",
"Factors":{"Treatment":"EMS","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"8","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2254",
"Factors":{"Treatment":"EMS-Treated","Gender":"Female"},
"Additional sample data":{"Age":"13","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2220",
"Factors":{"Treatment":"EMS-Treated","Gender":"Female"},
"Additional sample data":{"Age":"15","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2263",
"Factors":{"Treatment":"EMS-Treated","Gender":"Female"},
"Additional sample data":{"Age":"16","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2258",
"Factors":{"Treatment":"EMS-Treated","Gender":"Female"},
"Additional sample data":{"Age":"25","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2216",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"10","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2210",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"12","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2249",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"12","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2264",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"14","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2238",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"16","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2234",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"20","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2225",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"24","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2261",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"26","Volume":"1-2","Units":"mL"}
},
{
"Subject ID":"-",
"Sample ID":"2248",
"Factors":{"Treatment":"EMS-Treated","Gender":"Male(gelding)"},
"Additional sample data":{"Age":"9","Volume":"1-2","Units":"mL"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"A mobile set-up allowed for immediate processing of samples from study horses their home farm. 50mL of blood was collected into two EDTA tubes, two tubes, and one sodium oxalate tube. EDTA and sodium oxalate treated samples thoroughly mixed by inversion and immediately centrifuged to pellet the cells allow for removal of plasma by pipette. Blood drawn in a no-additive tube was to clot, centrifuged, and had the serum removed by pipette. The draw yielded mL of plasma and 3-4mL of serum, which was then divided in to 1mL aliquots and snap frozen by immersion in liquid nitrogen. Upon returning to the lab, the were then transfered to -80C for storage. Currently, only plasma is being for metabolomic analysis.","COLLECTION_PROTOCOL_FILENAME":"collection.txt","SAMPLE_TYPE":"Blood","COLLECTION_METHOD":"jugular venipuncture","COLLECTION_LOCATION":"On farm","COLLECTION_DURATION":"30 minutes per horse total","COLLECTION_TIME":"na","VOLUMEORAMOUNT_COLLECTED":"50ml whole blood","STORAGE_CONDITIONS":"snap frozen in LN2 on farm, -80 in lab","COLLECTION_VIALS":"glass vacutainer","STORAGE_VIALS":"plastic cryovials","COLLECTION_TUBE_TEMP":"ambient during draw and centrifugation, then LN2 after plasma removal","ADDITIVES":"EDTA","BLOOD_SERUM_OR_PLASMA":"PLASMA"},

"TREATMENT":{"TREATMENT_SUMMARY":"Blood was collected from the jugular vein and processed for serum, plasma, and using standard procedures. To minimize circadian and meal associated effects on parameters, samples were collected in the morning prior to feeding concentrated Care was taken to minimize stress to the animals, and no special treatments given. Body measures were also gathered on each animal to capture regional and body size using a well optimized protocol, as well as body condition scores to the Henneke system [numerical scores of 1 for emaciated to 9 for extremely Detailed diets, exercise regimes and a complete health history on each were recorded. are privately-owned, live on several farms in the central area, and may have naturaly aquired disease. Based on the collected each horse is assigned to one of three diagnostic groups: 1) Normal Control, Metabolic Syndrome and 3)EMS- under treatment.","TREATMENT_PROTOCOL_FILENAME":"treatment.txt"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"Metabolomics_LCMSProtocol.pdf","SAMPLEPREP_PROTOCOL_COMMENTS":"Standard protein precipitation method is included in this document","PROCESSING_METHOD":"PLASMA","EXTRACTION_METHOD":"PLASMA"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","COLUMN_NAME":"ACE Excel 2 C18-PFP (100 x 2.1mm, 2um)","METHODS_FILENAME":"Metabolomics_LCMSProtocol.pdf","INTERNAL_STANDARD":"Appendix A - Internal Standard Prep GLCMS.pdf"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"Analysis ID (will be added)","OPERATOR_NAME":"Garrett Lab","DETECTOR_TYPE":"Orbitrap"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"peak area",

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}

}