{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000300","ANALYSIS_ID":"AN000478","VERSION":"1","CREATED_ON":"December 28, 2015, 12:34 pm"},

"PROJECT":{"PROJECT_TITLE":"Identifiying Colonization Factors of Campylobacter jejuni","PROJECT_SUMMARY":"Using next-generation approaches to identify both bacterial and host factors that influence colonization of the chicken gastrointestinal tract by C. jejuni","INSTITUTE":"University of Michigan","DEPARTMENT":"Microbiology and Immunology","LABORATORY":"DiRita Lab","LAST_NAME":"DiRita","FIRST_NAME":"Victor","ADDRESS":"Ann Arbor, MI","EMAIL":"vdirita@umich.edu","PHONE":"734-936-3804"},

"STUDY":{"STUDY_TITLE":"Chicken/C. jejuni Bile Acid Study","STUDY_SUMMARY":"Cecal samples were isolated directly from the ceca of dissected chickens that were either experimentally infected with C. jejuni DRH212 or mock-infected with PBS. Cecal samples were re-suspended in Life Technologies 1X PBS based on weight of sample (1 ml/100 mg = 10-1 dilution) and stored at -80C.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"2","TOTAL_SUBJECTS":"4"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Gallus gallus","TAXONOMY_ID":"9031"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0011938",
"Sample ID":"S00017774",
"Factors":{"C. jejuni Infection":"yes"}
},
{
"Subject ID":"SU0011938",
"Sample ID":"S00017775",
"Factors":{"C. jejuni Infection":"yes"}
},
{
"Subject ID":"SU0011938",
"Sample ID":"S00017776",
"Factors":{"C. jejuni Infection":"no"}
},
{
"Subject ID":"SU0011938",
"Sample ID":"S00017777",
"Factors":{"C. jejuni Infection":"no"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Cecum"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"Bile Acids-20150305.docx"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent 1260","COLUMN_NAME":"Waters Acquity BEH C18 (50 x 2mm, 1.7um)","METHODS_FILENAME":"2014-07-30-Bile_acid-full-BEH-C18-I.m"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"Bile Acids-20150305.docx"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","INSTRUMENT_NAME":"Agilent 6410 QQQ Agilent 6410 QQQ"},

"MS_METABOLITE_DATA":{
"Units":"uM",

"Data":[{"Metabolite":"a-Muricholic acid","S00017774":"0","S00017775":"56.81936","S00017776":"0","S00017777":"0"},{"Metabolite":"b-Muricholic acid","S00017774":"34.2","S00017775":"33.8","S00017776":"74.8","S00017777":"40.1"},{"Metabolite":"Cholic acid","S00017774":"756.1","S00017775":"2153","S00017776":"1722","S00017777":"1311"},{"Metabolite":"Chenodeoxycholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"Deoxycholic acid","S00017774":"63.7","S00017775":"1980","S00017776":"241","S00017777":"0"},{"Metabolite":"Glychocholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"Glycochenodeoxycholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"Glycodeoxycholic acid","S00017774":"44.1","S00017775":"39.1","S00017776":"39.3","S00017777":"41.9"},{"Metabolite":"Glycohyodeoxycholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"Glycolithocholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"Glycoursodeoxycholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"g-Muricholic acid (hyocholic acid)","S00017774":"306.1","S00017775":"256.3","S00017776":"465.2","S00017777":"792.1"},{"Metabolite":"Hyodeoxycholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"Taurocholic acid","S00017774":"1009.8","S00017775":"356.2","S00017776":"119","S00017777":"150.4"},{"Metabolite":"Taurochenodeoxycholic acid","S00017774":"437.8","S00017775":"466.4","S00017776":"523.9","S00017777":"123"},{"Metabolite":"Taurodeoxycholic acid","S00017774":"38.8","S00017775":"12.1","S00017776":"9.4","S00017777":"8.5"},{"Metabolite":"Tauro-hyodeoxycholic acid","S00017774":"86.1","S00017775":"32.4","S00017776":"32.2","S00017777":"33.2"},{"Metabolite":"Taurolithocolic acid","S00017774":"162.5","S00017775":"272.2","S00017776":"163.1","S00017777":"153.5"},{"Metabolite":"Tauroursodeoxycholic acid","S00017774":"87.6","S00017775":"34.1","S00017776":"34","S00017777":"34.1"},{"Metabolite":"Ursodeoxycholic acid","S00017774":"0","S00017775":"0","S00017776":"0","S00017777":"0"},{"Metabolite":"w-Muricholic acid","S00017774":"115","S00017775":"152.6","S00017776":"268.7","S00017777":"596.2"}],

"Metabolites":[{"Metabolite":"a-Muricholic acid","Local ID":"aMCA","PubChem CID":"53477700"},{"Metabolite":"b-Muricholic acid","Local ID":"bMCA","PubChem CID":"5283853"},{"Metabolite":"Cholic acid","Local ID":"CA","PubChem CID":"221493"},{"Metabolite":"Chenodeoxycholic acid","Local ID":"CDCA","PubChem CID":"10133"},{"Metabolite":"Deoxycholic acid","Local ID":"DCA","PubChem CID":"6742"},{"Metabolite":"Glychocholic acid","Local ID":"GCA","PubChem CID":"10140"},{"Metabolite":"Glycochenodeoxycholic acid","Local ID":"GCDCA","PubChem CID":"9548796"},{"Metabolite":"Glycodeoxycholic acid","Local ID":"GDCA","PubChem CID":"18602029"},{"Metabolite":"Glycohyodeoxycholic acid","Local ID":"GHDCA","PubChem CID":"114611"},{"Metabolite":"Glycolithocholic acid","Local ID":"GLCA","PubChem CID":"115245"},{"Metabolite":"Glycoursodeoxycholic acid","Local ID":"GUDCA","PubChem CID":"12310288"},{"Metabolite":"g-Muricholic acid (hyocholic acid)","Local ID":"HCA","PubChem CID":"92805"},{"Metabolite":"Hyodeoxycholic acid","Local ID":"HDCA","PubChem CID":"16219478"},{"Metabolite":"Taurocholic acid","Local ID":"TCA","PubChem CID":"6675"},{"Metabolite":"Taurochenodeoxycholic acid","Local ID":"TCDCA","PubChem CID":"54608447"},{"Metabolite":"Taurodeoxycholic acid","Local ID":"TDCA","PubChem CID":"10594"},{"Metabolite":"Tauro-hyodeoxycholic acid","Local ID":"THDCA","PubChem CID":"9848818"},{"Metabolite":"Taurolithocolic acid","Local ID":"TLCA","PubChem CID":"10595"},{"Metabolite":"Tauroursodeoxycholic acid","Local ID":"TUDCA","PubChem CID":"9848818"},{"Metabolite":"Ursodeoxycholic acid","Local ID":"UDCA","PubChem CID":"54285959"},{"Metabolite":"w-Muricholic acid","Local ID":"wMCA","PubChem CID":"5283851"}]
}

}