{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000303","ANALYSIS_ID":"AN000482","VERSION":"1","CREATED_ON":"December 29, 2015, 9:05 am"},

"PROJECT":{"PROJECT_TITLE":"Targeted bile acid metabolomics","PROJECT_SUMMARY":"Alterations in fecal bile acids before and after fecal transplant","INSTITUTE":"University of Michigan","DEPARTMENT":"Internal Medicine","LABORATORY":"Young Lab","LAST_NAME":"Young","FIRST_NAME":"Vincent","ADDRESS":"Ann Arbor, MI","EMAIL":"youngvi@med.umich.edu","PHONE":"734-764-2237"},

"STUDY":{"STUDY_TITLE":"Human fecal bile acid profiles before and after fecal transplant","STUDY_SUMMARY":"Understand the bile acid profiles from the feces of fecal microbiota transplant FMT patients that successfully recover from recurrent C. difficile infection. Submitting fecal samples from patients prior to their FMT and post FMT. Interested in the bile acid profiles of the donor stool that is used in successful transplants. Bile acids are important for C. difficile spore germination and outgrowth.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"6","TOTAL_SUBJECTS":"15"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0012181",
"Sample ID":"S00018180",
"Factors":{"Transplant type":"pre-FMT"}
},
{
"Subject ID":"SU0012182",
"Sample ID":"S00018181",
"Factors":{"Transplant type":"post-FMT"}
},
{
"Subject ID":"SU0012183",
"Sample ID":"S00018182",
"Factors":{"Transplant type":"post-FMT"}
},
{
"Subject ID":"SU0012184",
"Sample ID":"S00018183",
"Factors":{"Transplant type":"post-FMT"}
},
{
"Subject ID":"SU0012185",
"Sample ID":"S00018184",
"Factors":{"Transplant type":"donor non-homogenized"}
},
{
"Subject ID":"SU0012186",
"Sample ID":"S00018185",
"Factors":{"Transplant type":"donor homogenized"}
},
{
"Subject ID":"SU0012187",
"Sample ID":"S00018186",
"Factors":{"Transplant type":"pre-FMT"}
},
{
"Subject ID":"SU0012188",
"Sample ID":"S00018187",
"Factors":{"Transplant type":"pre-FMT"}
},
{
"Subject ID":"SU0012189",
"Sample ID":"S00018188",
"Factors":{"Transplant type":"post-FMT"}
},
{
"Subject ID":"SU0012190",
"Sample ID":"S00018189",
"Factors":{"Transplant type":"post-FMT"}
},
{
"Subject ID":"SU0012191",
"Sample ID":"S00018190",
"Factors":{"Transplant type":"post-FMT"}
},
{
"Subject ID":"SU0012192",
"Sample ID":"S00018191",
"Factors":{"Transplant type":"mouse ileum"}
},
{
"Subject ID":"SU0012193",
"Sample ID":"S00018192",
"Factors":{"Transplant type":"mouse ileum"}
},
{
"Subject ID":"SU0012194",
"Sample ID":"S00018193",
"Factors":{"Transplant type":"mouse cecum"}
},
{
"Subject ID":"SU0012195",
"Sample ID":"S00018194",
"Factors":{"Transplant type":"mouse cecum"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Cecum"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"Bile Acids-20150305.docx"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent 1260","COLUMN_NAME":"Waters Acquity BEH C18 (50 x 2mm, 1.7um)","METHODS_FILENAME":"2014-07-30-Bile_acid-full-BEH-C18-I.m"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"Bile Acids-20150305.docx"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","INSTRUMENT_NAME":"Agilent 6410A QQQ Agilent QQQ 6410A"},

"MS_METABOLITE_DATA":{
"Units":"ug/100 mg",

"Data":[{"Metabolite":"a-Muricholic acid","S00018180":"","S00018181":"","S00018182":"","S00018183":"","S00018184":"","S00018185":"","S00018186":"","S00018187":"","S00018188":"","S00018189":"","S00018190":"0.007749","S00018191":"","S00018192":"0.0418","S00018193":"0.33945","S00018194":"0.4942"},{"Metabolite":"b-Muricholic acid","S00018180":"","S00018181":"","S00018182":"","S00018183":"","S00018184":"","S00018185":"0.02669","S00018186":"","S00018187":"","S00018188":"","S00018189":"","S00018190":"","S00018191":"","S00018192":"0.1485","S00018193":"0.8804","S00018194":"0.7931"},{"Metabolite":"Cholic acid","S00018180":">200000","S00018181":"0.2247","S00018182":"0.7124","S00018183":"14.5606","S00018184":">200000","S00018185":"8.0546","S00018186":">200000","S00018187":">200000","S00018188":"0.3038","S00018189":"0.2449","S00018190":"0.07055","S00018191":"0.4848","S00018192":"8.1868","S00018193":"0.982","S00018194":"0.5893"},{"Metabolite":"Chenodeoxycholic acid","S00018180":">200000","S00018181":">200000","S00018182":">200000","S00018183":">200000","S00018184":">200000","S00018185":">200000","S00018186":"2.9839","S00018187":"3.2772","S00018188":">200000","S00018189":">200000","S00018190":">200000","S00018191":">200000","S00018192":"0.2154","S00018193":">200000","S00018194":"4.6905"},{"Metabolite":"Deoxycholic acid","S00018180":">200000","S00018181":">200000","S00018182":">200000","S00018183":">200000","S00018184":">200000","S00018185":">200000","S00018186":"3.0177","S00018187":"3.0727","S00018188":">200000","S00018189":">200000","S00018190":">200000","S00018191":">200000","S00018192":"0.2266","S00018193":">200000","S00018194":"47.1113"},{"Metabolite":"Glychocholic acid","S00018180":"7.94","S00018181":"0.00734","S00018182":"0.0041","S00018183":"0.0101","S00018184":"0.009384","S00018185":"","S00018186":"0.008165","S00018187":"0.01234","S00018188":"","S00018189":"","S00018190":"","S00018191":"1.195","S00018192":"0.05142","S00018193":"","S00018194":""},{"Metabolite":"Glycochenodeoxycholic acid","S00018180":"27.073","S00018181":"0.3143","S00018182":"0.048","S00018183":"0.008968","S00018184":"0.06","S00018185":"0.02378","S00018186":"0.03902","S00018187":"0.097","S00018188":"0.01287","S00018189":"0.00245","S00018190":"0.0097","S00018191":"0.1475","S00018192":"0.01282","S00018193":"","S00018194":"0.10011"},{"Metabolite":"Glycodeoxycholic acid","S00018180":"0.01082","S00018181":"0.01927","S00018182":"0.02963","S00018183":"0.04087","S00018184":"0.03958","S00018185":"0.01086","S00018186":"0.01497","S00018187":"0.0131","S00018188":"0.02124","S00018189":"0.04045","S00018190":"0.02822","S00018191":"0.08717","S00018192":"0.01493","S00018193":"0.01463","S00018194":"0.01551"},{"Metabolite":"Glycohyodeoxycholic acid","S00018180":"","S00018181":"","S00018182":"","S00018183":"","S00018184":"","S00018185":"","S00018186":"0.000799","S00018187":"","S00018188":"","S00018189":"","S00018190":"","S00018191":"0.04437","S00018192":"0.00744","S00018193":"","S00018194":""},{"Metabolite":"Glycolithocholic acid","S00018180":"0.0675","S00018181":"0.08552","S00018182":"","S00018183":"0.08184","S00018184":"0.08719","S00018185":"","S00018186":"0.1016","S00018187":"0.08745","S00018188":"0.3164","S00018189":"0.0477","S00018190":"0.2543","S00018191":"","S00018192":"0.03156","S00018193":"","S00018194":"0.03803"},{"Metabolite":"Glycoursodeoxycholic acid","S00018180":"0.0258","S00018181":"0.0185","S00018182":"","S00018183":"0.000133","S00018184":"0.00108","S00018185":"","S00018186":"0.001303","S00018187":"225.6","S00018188":"","S00018189":"","S00018190":"0.000236","S00018191":"0.0189","S00018192":"0.000352","S00018193":"","S00018194":""},{"Metabolite":"g-Muricholic acid (hyocholic acid)","S00018180":"0.12","S00018181":"0.01872","S00018182":"0.2924","S00018183":"0.045","S00018184":"0.2052","S00018185":"0.03074","S00018186":"0.6458","S00018187":"0.5576","S00018188":"0.0104","S00018189":"0.02634","S00018190":"0.001849","S00018191":"1.7773","S00018192":"0.00934","S00018193":"1340","S00018194":"1087"},{"Metabolite":"Hyodeoxycholic acid","S00018180":"","S00018181":"","S00018182":"","S00018183":"","S00018184":"","S00018185":"","S00018186":"0.5752","S00018187":"0.929","S00018188":"0.5057","S00018189":"","S00018190":"","S00018191":"9.8508","S00018192":"0.04122","S00018193":"2.3584","S00018194":"2.2198"},{"Metabolite":"Lithocholic acid","S00018180":"","S00018181":"","S00018182":"0.4905","S00018183":"","S00018184":"","S00018185":"2.0097","S00018186":"","S00018187":"","S00018188":"11.3097","S00018189":"7.6328","S00018190":"7.4666","S00018191":"","S00018192":"0.2778","S00018193":"1.5939","S00018194":"0.9636"},{"Metabolite":"Taurocholic acid","S00018180":"0.4306","S00018181":"0.0104","S00018182":"0.0101","S00018183":"0.0108","S00018184":"","S00018185":"","S00018186":"0.0899","S00018187":"0.0246","S00018188":"","S00018189":"0.00866","S00018190":"","S00018191":"0.0104","S00018192":"0.0102","S00018193":"0.096","S00018194":"0.0517"},{"Metabolite":"Taurochenodeoxycholic acid","S00018180":"2.4365","S00018181":"0.05131","S00018182":"0.01011","S00018183":"0.005835","S00018184":"0.01048","S00018185":"0.001915","S00018186":"0.09882","S00018187":"0.1122","S00018188":"0.006438","S00018189":"0.005368","S00018190":"0.004308","S00018191":"16.126","S00018192":"5.1696","S00018193":"0.06797","S00018194":"0.0672"},{"Metabolite":"Taurodeoxycholic acid","S00018180":"0.00864","S00018181":"0.00436","S00018182":"0.0034","S00018183":"0.01053","S00018184":"0.02811","S00018185":"0.00151","S00018186":"0.00424","S00018187":"0.00356","S00018188":"0.00787","S00018189":"0.1034","S00018190":"0.05495","S00018191":"57.7027","S00018192":"7.6808","S00018193":"0.1981","S00018194":"0.1448"},{"Metabolite":"Tauro-hyodeoxycholic acid","S00018180":"0.019","S00018181":"0.124","S00018182":"0.012","S00018183":"0.011","S00018184":"0.0107","S00018185":"0.0004","S00018186":"0.0171","S00018187":"0.0181","S00018188":"0.0108","S00018189":"0.0131","S00018190":"0.0119","S00018191":">200","S00018192":"28.72","S00018193":"0.174","S00018194":"0.7202"},{"Metabolite":"Taurolithocolic acid","S00018180":"0.1262","S00018181":"0.1154","S00018182":"0.3112","S00018183":"0.1037","S00018184":"0.08217","S00018185":"0.02649","S00018186":"0.04725","S00018187":"0.03213","S00018188":"0.03171","S00018189":"0.0885","S00018190":"0.07372","S00018191":"1.0383","S00018192":"0.3639","S00018193":"0.1636","S00018194":"0.09801"},{"Metabolite":"Tauroursodeoxycholic acid","S00018180":"0.00494","S00018181":"0.00333","S00018182":"0.00305","S00018183":"0.00277","S00018184":"0.00291","S00018185":"0.00117","S00018186":"0.00459","S00018187":"0.00467","S00018188":"0.00213","S00018189":"0.00345","S00018190":"0.00312","S00018191":">200","S00018192":"8.72","S00018193":"0.042","S00018194":"0.018"},{"Metabolite":"Ursodeoxycholic acid","S00018180":"0.05762","S00018181":"0.5861","S00018182":"1.4462","S00018183":"0.3121","S00018184":"2.2422","S00018185":"0.5004","S00018186":"0.1503","S00018187":"1.0051","S00018188":"0.04053","S00018189":"0.2229","S00018190":"0.4848","S00018191":"18.9178","S00018192":"0.0518","S00018193":"3.3847","S00018194":"0.8418"},{"Metabolite":"w-Muricholic acid","S00018180":"0.4433","S00018181":"785.9","S00018182":"24421","S00018183":"7018","S00018184":">200000","S00018185":"0.8812","S00018186":"0.1181","S00018187":"0.0816","S00018188":"0.0829","S00018189":"0.0486","S00018190":"0.00004","S00018191":">200","S00018192":"0.0331","S00018193":"3.36","S00018194":"2.95"}],

"Metabolites":[{"Metabolite":"a-Muricholic acid","abbreviation":"aMCA","PubChem CID":"53477700"},{"Metabolite":"b-Muricholic acid","abbreviation":"bMCA","PubChem CID":"5283853"},{"Metabolite":"Cholic acid","abbreviation":"CA","PubChem CID":"221493"},{"Metabolite":"Chenodeoxycholic acid","abbreviation":"CDCA","PubChem CID":"10133"},{"Metabolite":"Deoxycholic acid","abbreviation":"DCA","PubChem CID":"6742"},{"Metabolite":"Glychocholic acid","abbreviation":"GCA","PubChem CID":"10140"},{"Metabolite":"Glycochenodeoxycholic acid","abbreviation":"GCDCA","PubChem CID":"9548796"},{"Metabolite":"Glycodeoxycholic acid","abbreviation":"GDCA","PubChem CID":"18602029"},{"Metabolite":"Glycohyodeoxycholic acid","abbreviation":"GHDCA","PubChem CID":"114611"},{"Metabolite":"Glycolithocholic acid","abbreviation":"GLCA","PubChem CID":"115245"},{"Metabolite":"Glycoursodeoxycholic acid","abbreviation":"GUDCA","PubChem CID":"12310288"},{"Metabolite":"g-Muricholic acid (hyocholic acid)","abbreviation":"HCA","PubChem CID":"92805"},{"Metabolite":"Hyodeoxycholic acid","abbreviation":"HDCA","PubChem CID":"16219478"},{"Metabolite":"Lithocholic acid","abbreviation":"LCA","PubChem CID":"9903"},{"Metabolite":"Taurocholic acid","abbreviation":"TCA","PubChem CID":"6675"},{"Metabolite":"Taurochenodeoxycholic acid","abbreviation":"TCDCA","PubChem CID":"54608447"},{"Metabolite":"Taurodeoxycholic acid","abbreviation":"TDCA","PubChem CID":"10594"},{"Metabolite":"Tauro-hyodeoxycholic acid","abbreviation":"THDCA","PubChem CID":"9848818"},{"Metabolite":"Taurolithocolic acid","abbreviation":"TLCA","PubChem CID":"10595"},{"Metabolite":"Tauroursodeoxycholic acid","abbreviation":"TUDCA","PubChem CID":"9848818"},{"Metabolite":"Ursodeoxycholic acid","abbreviation":"UDCA","PubChem CID":"54285959"},{"Metabolite":"w-Muricholic acid","abbreviation":"wMCA","PubChem CID":"5283851"}]
}

}