{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000311","ANALYSIS_ID":"AN000496","VERSION":"1","CREATED_ON":"January 14, 2016, 11:57 am"},

"PROJECT":{"PROJECT_TITLE":"Lupus metabolomics","PROJECT_SUMMARY":"The purpose of this study was to compare the metabolic and lipidomic profile of plasma from 3 month old lupus-prone (TC) and control (B6) mice.","INSTITUTE":"University of Florida","DEPARTMENT":"Pathology, Immunology & Laboratory Medicine","LABORATORY":"Laurence M. Morel Laboratory","LAST_NAME":"Morel","FIRST_NAME":"Laurence","ADDRESS":"College of Medicine 1395 Center Drive, D6-18 Gainesville, FL 32610-0275","EMAIL":"morel@ufl.edu","PHONE":"352-392-3790"},

"STUDY":{"STUDY_TITLE":"TC and B6 untreated plasma in lupus-prone mice","STUDY_TYPE":"untreated","STUDY_SUMMARY":"compare plasma samples from 3 month old lupus-prone (TC) and control (B6) mice","INSTITUTE":"University of Florida","DEPARTMENT":"SECIM","LABORATORY":"Laurence M. Morel Laboratory","LAST_NAME":"Morel","FIRST_NAME":"Laurence","ADDRESS":"College of Medicine 1395 Center Drive, D6-18 Gainesville, FL 32610-0275","EMAIL":"morel@ufl.edu","PHONE":"352-392-3790","NUM_GROUPS":"2","TOTAL_SUBJECTS":"17"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENOTYPE_STRAIN":"[C57BL-6J (B6)]/[B6.Sle1.Sle2.Sle3 (TC)]","AGE_OR_AGE_RANGE":"99 days/93-99 days","GENDER":"female","ANIMAL_ANIMAL_SUPPLIER":"in house/in house","ANIMAL_HOUSING":"SPF/SPF","ANIMAL_LIGHT_CYCLE":"standard|standard","ANIMAL_FEED":"standard|standard","ANIMAL_WATER":"standard|standard"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"B6_F1",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F1_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F3",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F3_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F4",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F4_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F5",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F5_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3646",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3646_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3649",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3649_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3651",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3651_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3668",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3668_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"None","COLLECTION_PROTOCOL_ID":"IACUC 201308189","COLLECTION_PROTOCOL_FILENAME":"Metabolomics_LCMSProtocol_plasma.pdf","SAMPLE_TYPE":"blood","COLLECTION_METHOD":"heart puncture","COLLECTION_TIME":"terminal","STORAGE_CONDITIONS":"-20C","COLLECTION_VIALS":"heparinized tubes","BLOOD_SERUM_OR_PLASMA":"plasma"},

"TREATMENT":{"TREATMENT_SUMMARY":"no treatement (controls for KD diet study)"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"None","SAMPLEPREP_PROTOCOL_FILENAME":"Metabolomics_LCMSProtocol_plasma.pdf;Appendix A - Internal Standard Prep GLCMS.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"None","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Dionex Ultimate 3000","COLUMN_NAME":"ACE Excel 2 C18-PFP (100 x 2.1mm, 2um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"Metabolomics_LCMSProtocol_plasma.pdf"},

"MS":{"INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_COMMENTS":"HESI Positive Peak Height"},

"MS_METABOLITE_DATA":{
"Units":"Peak height",

"Data":[{"Metabolite":"(-)-Annonaine","TC_f3646":"188000.00","TC_f3646_2":"225000.00","TC_f3651":"571000.00","TC_f3651_2":"692000.00","TC_f3649":"549000.00","TC_f3649_2":"528000.00","TC_f3668":"535000.00","TC_f3668_2":"632000.00","B6_F1":"51600.00","B6_F1_2":"43800.00","B6_F2":"272000.00","B6_F3":"68700.00","B6_F3_2":"69100.00","B6_F4":"18100.00","B6_F4_2":"32700.00","B6_F5":"89100.00","B6_F5_2":"112000.00"},{"Metabolite":"(+)-Bornane-2,5-dione_1","TC_f3646":"179000.00","TC_f3646_2":"206000.00","TC_f3651":"210000.00","TC_f3651_2":"243000.00","TC_f3649":"167000.00","TC_f3649_2":"163000.00","TC_f3668":"127000.00","TC_f3668_2":"153000.00","B6_F1":"127000.00","B6_F1_2":"135000.00","B6_F2":"88000.00","B6_F3":"134000.00","B6_F3_2":"179000.00","B6_F4":"113000.00","B6_F4_2":"80500.00","B6_F5":"139000.00","B6_F5_2":"154000.00"},{"Metabolite":"(+)-Bornane-2,5-dione_2","TC_f3646":"17500.00","TC_f3646_2":"18800.00","TC_f3651":"52500.00","TC_f3651_2":"67800.00","TC_f3649":"19700.00","TC_f3649_2":"13200.00","TC_f3668":"42900.00","TC_f3668_2":"23600.00","B6_F1":"184000.00","B6_F1_2":"168000.00","B6_F2":"492000.00","B6_F3":"","B6_F3_2":"14600.00","B6_F4":"124000.00","B6_F4_2":"192000.00","B6_F5":"17200.00","B6_F5_2":""},{"Metabolite":"(+)-Bornane-2,5-dione_3","TC_f3646":"29400.00","TC_f3646_2":"23000.00","TC_f3651":"36400.00","TC_f3651_2":"32800.00","TC_f3649":"8030.00","TC_f3649_2":"","TC_f3668":"29500.00","TC_f3668_2":"25300.00","B6_F1":"476000.00","B6_F1_2":"502000.00","B6_F2":"363000.00","B6_F3":"52100.00","B6_F3_2":"41100.00","B6_F4":"454000.00","B6_F4_2":"468000.00","B6_F5":"36900.00","B6_F5_2":"33300.00"},{"Metabolite":"(1-Ribosylimidazole)-4-acetate","TC_f3646":"78000.00","TC_f3646_2":"218000.00","TC_f3651":"172000.00","TC_f3651_2":"204000.00","TC_f3649":"193000.00","TC_f3649_2":"217000.00","TC_f3668":"182000.00","TC_f3668_2":"210000.00","B6_F1":"83200.00","B6_F1_2":"70700.00","B6_F2":"66900.00","B6_F3":"74900.00","B6_F3_2":"119000.00","B6_F4":"62400.00","B6_F4_2":"48900.00","B6_F5":"106000.00","B6_F5_2":"124000.00"},{"Metabolite":"(3-Arylcarbonyl)-alanine_1","TC_f3646":"5250000.00","TC_f3646_2":"5560000.00","TC_f3651":"6720000.00","TC_f3651_2":"7090000.00","TC_f3649":"4360000.00","TC_f3649_2":"4550000.00","TC_f3668":"2640000.00","TC_f3668_2":"2960000.00","B6_F1":"1640000.00","B6_F1_2":"1610000.00","B6_F2":"1020000.00","B6_F3":"1140000.00","B6_F3_2":"1190000.00","B6_F4":"762000.00","B6_F4_2":"793000.00","B6_F5":"1560000.00","B6_F5_2":"1700000.00"},{"Metabolite":"(3-Arylcarbonyl)-alanine_2","TC_f3646":"101000.00","TC_f3646_2":"93000.00","TC_f3651":"218000.00","TC_f3651_2":"236000.00","TC_f3649":"203000.00","TC_f3649_2":"158000.00","TC_f3668":"135000.00","TC_f3668_2":"124000.00","B6_F1":"102000.00","B6_F1_2":"96400.00","B6_F2":"121000.00","B6_F3":"137000.00","B6_F3_2":"174000.00","B6_F4":"115000.00","B6_F4_2":"118000.00","B6_F5":"184000.00","B6_F5_2":"169000.00"},{"Metabolite":"(4Z,7Z,10Z,13Z,16Z,19Z)-Docosahexaenoic 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acid_1","TC_f3646":"355000.00","TC_f3646_2":"442000.00","TC_f3651":"203000.00","TC_f3651_2":"178000.00","TC_f3649":"380000.00","TC_f3649_2":"364000.00","TC_f3668":"404000.00","TC_f3668_2":"478000.00","B6_F1":"1750000.00","B6_F1_2":"1380000.00","B6_F2":"1660000.00","B6_F3":"541000.00","B6_F3_2":"667000.00","B6_F4":"740000.00","B6_F4_2":"1040000.00","B6_F5":"372000.00","B6_F5_2":"415000.00"},{"Metabolite":"(6Z,9Z,12Z)-Octadecatrienoic acid_2","TC_f3646":"834000.00","TC_f3646_2":"957000.00","TC_f3651":"676000.00","TC_f3651_2":"798000.00","TC_f3649":"167000.00","TC_f3649_2":"220000.00","TC_f3668":"450000.00","TC_f3668_2":"483000.00","B6_F1":"4930000.00","B6_F1_2":"5090000.00","B6_F2":"2710000.00","B6_F3":"981000.00","B6_F3_2":"885000.00","B6_F4":"2670000.00","B6_F4_2":"2810000.00","B6_F5":"497000.00","B6_F5_2":"667000.00"},{"Metabolite":"(8Z,11Z,14Z)-Icosatrienoic acid","TC_f3646":"151000.00","TC_f3646_2":"164000.00","TC_f3651":"134000.00","TC_f3651_2":"136000.00","TC_f3649":"14100.00","TC_f3649_2":"32700.00","TC_f3668":"125000.00","TC_f3668_2":"83400.00","B6_F1":"1360000.00","B6_F1_2":"1190000.00","B6_F2":"1050000.00","B6_F3":"195000.00","B6_F3_2":"190000.00","B6_F4":"826000.00","B6_F4_2":"821000.00","B6_F5":"143000.00","B6_F5_2":"139000.00"},{"Metabolite":"(9Z)-Hexadecenoic acid_1","TC_f3646":"122000.00","TC_f3646_2":"160000.00","TC_f3651":"87200.00","TC_f3651_2":"96200.00","TC_f3649":"71400.00","TC_f3649_2":"81600.00","TC_f3668":"76300.00","TC_f3668_2":"95300.00","B6_F1":"306000.00","B6_F1_2":"263000.00","B6_F2":"168000.00","B6_F3":"82100.00","B6_F3_2":"119000.00","B6_F4":"156000.00","B6_F4_2":"169000.00","B6_F5":"110000.00","B6_F5_2":"118000.00"},{"Metabolite":"(9Z)-Hexadecenoic 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}

}