{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000354","ANALYSIS_ID":"AN000578","VERSION":"1","CREATED_ON":"February 24, 2016, 1:42 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolite comparison of mouse gastric tissue and glands","PROJECT_SUMMARY":"The goal of this project was to compare the metabolite profiles of the: mouse gastric antrum and the mouse gastric corpus, the mouse gastric antrum and the mouse gastric antrum isolated glands, and the mouse gastric corpus and the mouse gastric corpus isolated glands.","INSTITUTE":"University of California, Davis","DEPARTMENT":"Genome and Biomedical Sciences Facility","LABORATORY":"WCMC Metabolomics Core","LAST_NAME":"Fiehn","FIRST_NAME":"Oliver","ADDRESS":"1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616","EMAIL":"ofiehn@ucdavis.edu","PHONE":"(530) 754-8258","FUNDING_SOURCE":"NIH U24DK097154"},

"STUDY":{"STUDY_TITLE":"Metabolite comparison of mouse gastric tissue and glands","STUDY_SUMMARY":"The goal of this project was to compare the metabolite profiles of the: mouse gastric antrum and the mouse gastric corpus, the mouse gastric antrum and the mouse gastric antrum isolated glands, and the mouse gastric corpus and the mouse gastric corpus isolated glands.","INSTITUTE":"University of California, Davis","DEPARTMENT":"Genome and Biomedical Sciences Facility","LABORATORY":"WCMC Metabolomics Core","LAST_NAME":"Fiehn","FIRST_NAME":"Oliver","ADDRESS":"1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616","EMAIL":"ofiehn@ucdavis.edu","PHONE":"(530) 754-8258","NUM_GROUPS":"8","TOTAL_SUBJECTS":"32"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"Otte_Biorec01",
"Sample ID":"Biorec01",
"Factors":{"Organ":"Plasma"}
},
{
"Subject ID":"Otte_Biorec02",
"Sample ID":"Biorec02",
"Factors":{"Organ":"Plasma"}
},
{
"Subject ID":"Otte_Biorec03",
"Sample ID":"Biorec03",
"Factors":{"Organ":"Plasma"}
},
{
"Subject ID":"Otte03_1_001",
"Sample ID":"1",
"Factors":{"Organ":"Corpus"}
},
{
"Subject ID":"Otte01_2_002",
"Sample ID":"2",
"Factors":{"Organ":"Corpus"}
},
{
"Subject ID":"Otte10_3_003",
"Sample ID":"3",
"Factors":{"Organ":"Corpus"}
},
{
"Subject ID":"Otte16_4_004",
"Sample ID":"4",
"Factors":{"Organ":"Corpus"}
},
{
"Subject ID":"Otte12_5_005",
"Sample ID":"5",
"Factors":{"Organ":"Corpus"}
},
{
"Subject ID":"Otte13_6_006",
"Sample ID":"6",
"Factors":{"Organ":"Corpus"}
},
{
"Subject ID":"Otte11_7_007",
"Sample ID":"7",
"Factors":{"Organ":"Antrum"}
},
{
"Subject ID":"Otte02_8_008",
"Sample ID":"8",
"Factors":{"Organ":"Antrum"}
},
{
"Subject ID":"Otte08_9_009",
"Sample ID":"9",
"Factors":{"Organ":"Antrum"}
},
{
"Subject ID":"Otte07_10_010",
"Sample ID":"10",
"Factors":{"Organ":"Antrum"}
},
{
"Subject ID":"Otte05_11_011",
"Sample ID":"11",
"Factors":{"Organ":"Antrum"}
},
{
"Subject ID":"Otte14_12_012",
"Sample ID":"12",
"Factors":{"Organ":"Antrum"}
},
{
"Subject ID":"Otte15_13_013",
"Sample ID":"13",
"Factors":{"Organ":"Corpus Glands"}
},
{
"Subject ID":"Otte06_14_014",
"Sample ID":"14",
"Factors":{"Organ":"Corpus Glands"}
},
{
"Subject ID":"Otte09_15_015",
"Sample ID":"15",
"Factors":{"Organ":"Antrum Glands"}
},
{
"Subject ID":"Otte04_16_016",
"Sample ID":"16",
"Factors":{"Organ":"Antrum Glands"}
},
{
"Subject ID":"Pool_Otte_50_150",
"Sample ID":"Pool01",
"Factors":{"Organ":"Plasma"}
},
{
"Subject ID":"Pool_Otte_150_300",
"Sample ID":"Pool02",
"Factors":{"Organ":"Plasma"}
},
{
"Subject ID":"Pool_Otte_300_500",
"Sample ID":"Pool03",
"Factors":{"Organ":"Plasma"}
},
{
"Subject ID":"Pool_Otte_500_1600",
"Sample ID":"Pool04",
"Factors":{"Organ":"Plasma"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"The gastric samples (A and C) were prepared by dissecting tissue from the mouse, rinsing in PBS, and flash freezing on liquid N2. The samples were stored at ­80ºC. The glands samples (Aglands and Cglands) by isolating gastric glands from mouse stomach tissue using EDTA and Sucrose and sorbitol. The glands were centrifuged and the supernatant removed, but there is probably still sucrose and sorbitol left. These were flash frozen on liquid N2 and stored at ­80ºC.","COLLECTION_PROTOCOL_FILENAME":"StudyDesign-KarenOttemann-81215-1.pdf","SAMPLE_TYPE":"Tissue"},

"TREATMENT":{"TREATMENT_SUMMARY":"A. Mouse gastric antrum (n=6) C. Mouse gastric corpus (n=6) Aglands. Mouse gastric antrum isolated glands (n=2) Cglands. Mouse gastric corpus isolated glands (n=2)","TREATMENT_PROTOCOL_FILENAME":"StudyDesignAdamElhofy10202015.pdf"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"None"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"UPLC","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent 6550","COLUMN_NAME":"Waters Acquity CSH C18 (100 x 2.1mm, 1.7um) 1.7um Pre-Column","FLOW_GRADIENT":"15% B to 99% B","FLOW_RATE":"0.6 mL/min","COLUMN_TEMPERATURE":"65 C","METHODS_FILENAME":"Data Dictionary Fiehn laboratory_CSH QTOF lipidomics_05-29-2014.pdf","SOLVENT_A":"60:40 Acetonitrile:Water +10mM Ammonium Acetate +10mM Acetic Acid","SOLVENT_B":"9:1 Isopropanol:Acetonitrile +10mM Ammonium Acetate +10mM Acetic Acid","COLUMN_PRESSURE":"450-850 bar","INTERNAL_STANDARD":"See data dictionary","RETENTION_TIME":"See data dictionary","SAMPLE_INJECTION":"5.0 uL","ANALYTICAL_TIME":"13 min","CAPILLARY_VOLTAGE":"3500","TIME_PROGRAM":"15 min","WEAK_WASH_SOLVENT_NAME":"Isopropanol","WEAK_WASH_VOLUME":"5 seconds","STRONG_WASH_SOLVENT_NAME":"Same","TARGET_SAMPLE_TEMPERATURE":"Autosampler temp 4 C","RANDOMIZATION_ORDER":"Excel"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","DETECTOR_TYPE":"TOF MCP","SOFTWARE_VERSION":"MassHunter","DATA_FORMAT":".d"},

"MS":{"INSTRUMENT_NAME":"Agilent 6550 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"Lipidomics runs are performed in negative and positve mode (two filenames)","CAPILLARY_VOLTAGE":"3500","COLLISION_GAS":"Nitrogen","DRY_GAS_FLOW":"13 l/min","DRY_GAS_TEMP":"200","FRAGMENT_VOLTAGE":"175","FRAGMENTATION_METHOD":"Auto MS/MS","ION_SOURCE_TEMPERATURE":"325","ION_SPRAY_VOLTAGE":"1000","IONIZATION":"Neg","PRECURSOR_TYPE":"Intact Molecule","REAGENT_GAS":"Nitrogen","SOURCE_TEMPERATURE":"325 C","DATAFORMAT":".d","DESOLVATION_GAS_FLOW":"11 l/min","DESOLVATION_TEMPERATURE":"350 C","NEBULIZER":"35 psig","OCTPOLE_VOLTAGE":"750","SCAN_RANGE_MOVERZ":"60-1700 Da","SCANNING_CYCLE":"2 Hz","SCANNING_RANGE":"60-1700 Da","SKIMMER_VOLTAGE":"65"},

"MS_METABOLITE_DATA":{
"Units":"Peak height",

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