{
"METABOLOMICS WORKBENCH":{"VERSION":"1","CREATED_ON":"July 9, 2016, 1:23 pm"},

"PROJECT":{"PROJECT_TITLE":"Systemic Metabolomic Changes in Blood Samples of Lung Cancer Patients Identified by Gas Chromatography Time-of-Flight Mass Spectrometry","PROJECT_SUMMARY":"Lung cancer is a leading cause of cancer deaths worldwide. Metabolic alterations in tumor cells coupled with systemic indicators of the host response to tumor development have the potential to yield blood profiles with clinical utility for diagnosis and monitoring of treatment. We report results from two separate studies using gas chromatography time-of-flight mass spectrometry (GC-TOF MS) to profile metabolites in human blood samples that significantly differ from non-small cell lung cancer (NSCLC) adenocarcinoma and other lung cancer cases. Metabolomic analysis of blood samples from the two studies yielded a total of 437 metabolites, of which 148 were identified as known compounds and 289 identified as unknown compounds. Differential analysis identified 15 known metabolites in one study and 18 in a second study that were statistically different (p-values <0.05). Levels of maltose, palmitic acid, glycerol, ethanolamine, glutamic acid, and lactic acid were increased in cancer samples while amino acids tryptophan, lysine and histidine decreased. Many of the metabolites were found to be significantly different in both studies, suggesting that metabolomics appears to be robust enough to find systemic changes from lung cancer, thus showing the potential of this type of analysis for lung cancer detection.","INSTITUTE":"University of California, Davis","DEPARTMENT":"Genome and Biomedical Sciences Facility","LABORATORY":"WCMC Metabolomics Core","LAST_NAME":"Fiehn","FIRST_NAME":"Oliver","ADDRESS":"1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616","EMAIL":"ofiehn@ucdavis.edu","PHONE":"(530) 754-8258","FUNDING_SOURCE":"NIH U24DK097154","PUBLICATIONS":"doi: 10.3390/metabo5020192"},

"STUDY":{"STUDY_TITLE":"Systemic Metabolomic Changes in Blood Samples of Lung Cancer Patients Identified by Gas Chromatography Time-of-Flight Mass Spectrometry","STUDY_SUMMARY":"Lung cancer is a leading cause of cancer deaths worldwide. Metabolic alterations in tumor cells coupled with systemic indicators of the host response to tumor development have the potential to yield blood profiles with clinical utility for diagnosis and monitoring of treatment. We report results from two separate studies using gas chromatography time-of-flight mass spectrometry (GC-TOF MS) to profile metabolites in human blood samples that significantly differ from non-small cell lung cancer (NSCLC) adenocarcinoma and other lung cancer cases. Metabolomic analysis of blood samples from the two studies yielded a total of 437 metabolites, of which 148 were identified as known compounds and 289 identified as unknown compounds. Differential analysis identified 15 known metabolites in one study and 18 in a second study that were statistically different (p-values <0.05). Levels of maltose, palmitic acid, glycerol, ethanolamine, glutamic acid, and lactic acid were increased in cancer samples while amino acids tryptophan, lysine and histidine decreased. Many of the metabolites were found to be significantly different in both studies, suggesting that metabolomics appears to be robust enough to find systemic changes from lung cancer, thus showing the potential of this type of analysis for lung cancer detection.","INSTITUTE":"University of California, Davis","DEPARTMENT":"Genome and Biomedical Sciences Facility","LABORATORY":"WCMC Metabolomics Core","LAST_NAME":"Fiehn","FIRST_NAME":"Oliver","ADDRESS":"1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616","EMAIL":"ofiehn@ucdavis.edu","PHONE":"(530) 754-8258","TOTAL_SUBJECTS":"82","NUM_MALES":"20","NUM_FEMALES":"62","STUDY_COMMENTS":"SS = Sigma sample and is used as a quality control","PUBLICATIONS":"doi: 10.3390/metabo5020192"},

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"Factors":{"Organ":"Plasma","Disease State":"control","Gender":"M","Smoking Status":"Current"},
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"Factors":{"Organ":"Plasma","Disease State":"control","Gender":"M","Smoking Status":"Current"},
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},
{
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"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"62"}
},
{
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"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
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},
{
"Subject ID":"S_10",
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"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"69"}
},
{
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"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"62"}
},
{
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"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
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},
{
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"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
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},
{
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"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
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},
{
"Subject ID":"S_15",
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"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
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},
{
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"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
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},
{
"Subject ID":"S_17",
"Sample ID":"140515bjlsa37_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"65"}
},
{
"Subject ID":"S_18",
"Sample ID":"140515bjlsa39_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"87"}
},
{
"Subject ID":"S_19",
"Sample ID":"140515bjlsa41_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"59"}
},
{
"Subject ID":"S_20",
"Sample ID":"140515bjlsa43_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"64"}
},
{
"Subject ID":"S_21",
"Sample ID":"140515bjlsa46_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"76"}
},
{
"Subject ID":"S_22",
"Sample ID":"140515bjlsa48_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"65"}
},
{
"Subject ID":"S_23",
"Sample ID":"140515bjlsa50_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"57"}
},
{
"Subject ID":"S_24",
"Sample ID":"140516bjlsa02_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"76"}
},
{
"Subject ID":"S_25",
"Sample ID":"140516bjlsa04_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"62"}
},
{
"Subject ID":"S_26",
"Sample ID":"140516bjlsa07_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"60"}
},
{
"Subject ID":"S_27",
"Sample ID":"140516bjlsa09_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"67"}
},
{
"Subject ID":"S_28",
"Sample ID":"140516bjlsa11_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"64"}
},
{
"Subject ID":"S_29",
"Sample ID":"140516bjlsa13_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"63"}
},
{
"Subject ID":"S_30",
"Sample ID":"140516bjlsa15_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"64"}
},
{
"Subject ID":"S_31",
"Sample ID":"140516bjlsa18_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"73"}
},
{
"Subject ID":"S_32",
"Sample ID":"140516bjlsa20_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"74"}
},
{
"Subject ID":"S_33",
"Sample ID":"140516bjlsa22_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"66"}
},
{
"Subject ID":"S_34",
"Sample ID":"140516bjlsa24_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"68"}
},
{
"Subject ID":"S_35",
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"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"51"}
},
{
"Subject ID":"S_36",
"Sample ID":"140516bjlsa29_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"67"}
},
{
"Subject ID":"S_37",
"Sample ID":"140516bjlsa31_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"58"}
},
{
"Subject ID":"S_38",
"Sample ID":"140516bjlsa33_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"79"}
},
{
"Subject ID":"S_39",
"Sample ID":"140516bjlsa35_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"65"}
},
{
"Subject ID":"S_40",
"Sample ID":"140516bjlsa37_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"65"}
},
{
"Subject ID":"S_41",
"Sample ID":"140516bjlsa40_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"58"}
},
{
"Subject ID":"S_42",
"Sample ID":"140516bjlsa42_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"73"}
},
{
"Subject ID":"S_43",
"Sample ID":"140516bjlsa44_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"66"}
},
{
"Subject ID":"S_44",
"Sample ID":"140516bjlsa48_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"61"}
},
{
"Subject ID":"S_45",
"Sample ID":"140516bjlsa50_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"73"}
},
{
"Subject ID":"S_46",
"Sample ID":"140517bjlsa02_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"65"}
},
{
"Subject ID":"S_47",
"Sample ID":"140517bjlsa04_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"76"}
},
{
"Subject ID":"S_48",
"Sample ID":"140517bjlsa06_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"67"}
},
{
"Subject ID":"S_49",
"Sample ID":"140517bjlsa09_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"70"}
},
{
"Subject ID":"S_50",
"Sample ID":"140517bjlsa11_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"57"}
},
{
"Subject ID":"S_51",
"Sample ID":"140517bjlsa13_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"76"}
},
{
"Subject ID":"S_52",
"Sample ID":"140517bjlsa15_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"63"}
},
{
"Subject ID":"S_53",
"Sample ID":"140517bjlsa17_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"69"}
},
{
"Subject ID":"S_54",
"Sample ID":"140517bjlsa20_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"82"}
},
{
"Subject ID":"S_55",
"Sample ID":"140517bjlsa22_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"68"}
},
{
"Subject ID":"S_56",
"Sample ID":"140517bjlsa24_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"62"}
},
{
"Subject ID":"S_57",
"Sample ID":"140517bjlsa26_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"73"}
},
{
"Subject ID":"S_58",
"Sample ID":"140517bjlsa28_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"75"}
},
{
"Subject ID":"S_59",
"Sample ID":"140517bjlsa31_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"66"}
},
{
"Subject ID":"S_60",
"Sample ID":"140517bjlsa33_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"80"}
},
{
"Subject ID":"S_61",
"Sample ID":"140517bjlsa35_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"73"}
},
{
"Subject ID":"S_62",
"Sample ID":"140517bjlsa37_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"82"}
},
{
"Subject ID":"S_63",
"Sample ID":"140517bjlsa39_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"66"}
},
{
"Subject ID":"S_64",
"Sample ID":"140517bjlsa42_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"63"}
},
{
"Subject ID":"S_65",
"Sample ID":"140517bjlsa44_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"76"}
},
{
"Subject ID":"S_66",
"Sample ID":"140517bjlsa46_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"65"}
},
{
"Subject ID":"S_67",
"Sample ID":"140517bjlsa48_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"60"}
},
{
"Subject ID":"S_68",
"Sample ID":"140517bjlsa50_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"80"}
},
{
"Subject ID":"S_69",
"Sample ID":"140518bjlsa03_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"55"}
},
{
"Subject ID":"S_70",
"Sample ID":"140518bjlsa05_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"71"}
},
{
"Subject ID":"S_71",
"Sample ID":"140518bjlsa07_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"69"}
},
{
"Subject ID":"S_72",
"Sample ID":"140518bjlsa09_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"75"}
},
{
"Subject ID":"S_73",
"Sample ID":"140518bjlsa11_1",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"71"}
},
{
"Subject ID":"S_74",
"Sample ID":"140518bjlsa14_2",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"68"}
},
{
"Subject ID":"S_75",
"Sample ID":"140518bjlsa16_2",
"Factors":{"Organ":"Serum","Disease State":"control","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"75"}
},
{
"Subject ID":"S_76",
"Sample ID":"140518bjlsa18_2",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Current"},
"Additional sample data":{"Age at Blood Draw":"66"}
},
{
"Subject ID":"S_77",
"Sample ID":"140518bjlsa20_2",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"64"}
},
{
"Subject ID":"S_78",
"Sample ID":"140518bjlsa22_2",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"87"}
},
{
"Subject ID":"S_79",
"Sample ID":"140518bjlsa25_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"72"}
},
{
"Subject ID":"S_80",
"Sample ID":"140518bjlsa27_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"69"}
},
{
"Subject ID":"S_81",
"Sample ID":"140518bjlsa29_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"M","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"71"}
},
{
"Subject ID":"S_82",
"Sample ID":"140518bjlsa31_1",
"Factors":{"Organ":"Serum","Disease State":"cancer","Gender":"F","Smoking Status":"Former"},
"Additional sample data":{"Age at Blood Draw":"85"}
},
{
"Subject ID":"SS1",
"Sample ID":"140515bjlsa01_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS10",
"Sample ID":"140516bjlsa46_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS11",
"Sample ID":"140516bjlsa47_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS12",
"Sample ID":"140517bjlsa08_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS13",
"Sample ID":"140517bjlsa19_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS14",
"Sample ID":"140517bjlsa30_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS15",
"Sample ID":"140517bjlsa41_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS16",
"Sample ID":"140518bjlsa02_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS17",
"Sample ID":"140518bjlsa13_2",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS18",
"Sample ID":"140518bjlsa24_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS19",
"Sample ID":"140518bjlsa33_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS2",
"Sample ID":"140515bjlsa12_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS3",
"Sample ID":"140515bjlsa23_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS4",
"Sample ID":"140515bjlsa34_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS5",
"Sample ID":"140515bjlsa45_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS6",
"Sample ID":"140516bjlsa06_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS7",
"Sample ID":"140516bjlsa17_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS8",
"Sample ID":"140516bjlsa28_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
},
{
"Subject ID":"SS9",
"Sample ID":"140516bjlsa39_1",
"Factors":{"Organ":"Serum or Plasma","Disease State":"-","Gender":"-","Smoking Status":"-"},
"Additional sample data":{"Age at Blood Draw":"-"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Pre-existing patient blood samples were acquired from the biorepositories of two institutions (FHCRC and UCDMC), all collected and stored at -80 °C before use in these metabolomics studies. All patient samples for Study 1 (cases) were collected during a clinic visit prior to surgery for resectable early stage lung cancer and the controls were collected from clinic subjects without lung cancer. For Study 2, samples were acquired from University of California at Davis Medical Center (UCDMC) and included a variety of lung cancers. For Study 1, 20 control subjects were compared to 18 cases. Data from two samples were not included in the analysis due to low analytical results for these samples.","COLLECTION_PROTOCOL_FILENAME":"Metabolomic_Changes_in_Blood_Samples_of_Lung_Cancer_Patients.pdf","SAMPLE_TYPE":"Blood","BLOOD_SERUM_OR_PLASMA":"Both"},

"TREATMENT":{"TREATMENT_SUMMARY":"Blood samples (plasma) in Study 1 (FHCRC study) were taken from newly diagnosed lung cancer patients with NSCLC adenocarcinoma (mostly late stage) and were frequency matched with for age, gender and for general smoking history (current and former smokers). Controls for this study were blood samples collected from individuals who were cancer free and with no history of cancer and who were current or former smokers. The second set of blood samples (Study 2) came from patients diagnosed with lung cancers (different types) (11 cases) that were frequency matched (age and gender) with samples from individuals without cancer and with no history of cancer (11 controls). These samples were obtained from the UC Davis Cancer Center Biorepository (CCB) and the UC Davis Clinical laboratory at the UC Davis Medical Center (UCDMC). Smoking history and treatment status were known for most of the cases in Study 2, but not known for some of the control group. Fasting status of patients and controls were unknown. All blood samples (plasma and serum) were prepared using standard clinical SOPs specified at each institution and stored at -80 °C until use.","TREATMENT_PROTOCOL_FILENAME":"Metabolomic_Changes_in_Blood_Samples_of_Lung_Cancer_Patients.pdf"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"1. Switch on bath to pre-cool at –20°C (±2°C validity temperature range) 2. Gently rotate or aspirate the blood samples for about 10s to obtain a homogenised sample. 3. Aliquot 30µl of plasma sample to a 1.0 mL extraction solution. The extraction solution has to be prechilled using the ThermoElectron Neslab RTE 740 cooling bath set to -20°C. 4. Vortex the sample for about 10s and shake for 5 min at 4°C using the Orbital Mixing Chilling/Heating Plate. If you are using more than one sample, keep the rest of the sample on ice (chilled at <0°C with sodium chloride). 5. Centrifuge samples for 2min at 14000 rcf using the centrifuge Eppendorf 5415 D. 6. Aliquot two 450µL portions of the supernatant. One for analysis and one for a backup sample. Store the backup aliquot in -20°C freezer. 7. Evaporate one 450µL aliquots of the sample in the Labconco Centrivap cold trap concentrator to complete dryness. 8. The dried aliquot is then re-suspended with 450 µL 50% acetonitrile (degassed as given above). 9. Centrifuged for 2 min at 14000 rcf using the centrifuge Eppendorf 5415. 10. Remove supernatant to a new Eppendorf tube. 11. Evaporate the supernatant to dryness in the Labconco Centrivap cold trap concentrator. 12. Submit to derivatization.","SAMPLEPREP_PROTOCOL_FILENAME":"SOP_blood-GCTOF-11082012.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"Agilent 6890N","COLUMN_NAME":"Restek Corporation Rtx-5Sil MS","FLOW_RATE":"1 ml/min","COLUMN_TEMPERATURE":"50-330C","METHODS_FILENAME":"Data_Dictionary_Fiehn_laboratory_GCTOF_MS_primary_metabolism_10-15-2013_general.pdf","COLUMN_PRESSURE":"7.7 PSI","INJECTION_TEMPERATURE":"50 C ramped to 250 C by 12 C/s","SAMPLE_INJECTION":"0.5 uL","OVEN_TEMPERATURE":"50°C for 1 min, then ramped at 20°C/min to 330°C, held constant for 5 min","TRANSFERLINE_TEMPERATURE":"230C","WASHING_BUFFER":"Ethyl Acetate","SAMPLE_LOOP_SIZE":"30 m length x 0.25 mm internal diameter","RANDOMIZATION_ORDER":"Excel generated"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"WCMC Metabolomics Core","DETECTOR_TYPE":"TOF","SOFTWARE_VERSION":"ChromaTOF","DATA_FORMAT":".peg, .txt, .cdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Varian 210-MS GC Ion Trap","INSTRUMENT_TYPE":"GC Ion Trap","MS_TYPE":"EI","ION_MODE":"POSITIVE","ION_SOURCE_TEMPERATURE":"250 C","IONIZATION_ENERGY":"70 eV","MASS_ACCURACY":"Nominal","SOURCE_TEMPERATURE":"250 C","SCAN_RANGE_MOVERZ":"85-500 Da","SCANNING_CYCLE":"17 Hz","SCANNING_RANGE":"85-500 Da","SKIMMER_VOLTAGE":"1850 V"},

"MS_METABOLITE_DATA":{
"Units":"counts",

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