{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000509","ANALYSIS_ID":"AN000780","VERSION":"1","CREATED_ON":"December 5, 2016, 12:43 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolic changes to maternal rat liver tissue during and post-pregnancy.","PROJECT_TYPE":"global MS analysis","PROJECT_SUMMARY":"Assessing metabolic changes to maternal rat liver tissue during and post-pregnancy. Liver tissue was harvested post-mortem from rats or mice without pregnancy (Nulliparous - NP), time course during pregnancy in days (P2-4, P11-13m P18-20), lactation day 10 (LD10), in during involution of the liver (I2, I4, I6, I8, I10) and 4-weeks regression after preganancy (R4).","INSTITUTE":"University of Colorado, Denver","LAST_NAME":"Nemkov","FIRST_NAME":"Travis","ADDRESS":"12801 E 17th Avenue, RC-1 South, Rm 9403G, Aurora, CO, 80045, USA","EMAIL":"travis.nemkov@ucdenver.edu","PHONE":"303-724-5798"},

"STUDY":{"STUDY_TITLE":"Metabolic changes to maternal rat liver tissue during and post-pregnancy","STUDY_SUMMARY":"Assessing metabolic changes to maternal rat liver tissue during and post-pregnancy. Liver tissue was harvested post-mortem from rats or mice without pregnancy (Nulliparous - NP), time course during pregnancy in days (P2-4, P11-13m P18-20), lactation day 10 (LD10), in during involution of the liver (I2, I4, I6, I8, I10) and 4-weeks regression after preganancy (R4).","INSTITUTE":"University of Colorado Denver","LAST_NAME":"Nemkov","FIRST_NAME":"Travis","ADDRESS":"12801 E 17th Avenue RC-1 South, Mail stop 8101","EMAIL":"travis.nemkov@ucdenver.edu","PHONE":"303-724-5798"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Rattus norvegicus","TAXONOMY_ID":"10116"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"NP_2",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_3",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_57",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_58",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_91",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_102",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_10",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_11",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_12",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_13",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_14",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_16",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_17",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_18",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_25",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_7",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_15",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_23",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_61",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_69",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_76",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_9",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_22",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_31",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_99",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_103",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"I2_79",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_90",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_92",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_93",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_104",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I4_71",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I4_72",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I4_96",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I4_101",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I6_66",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_77",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_81",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_94",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_95",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I8_63",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_67",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_74",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_75",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_97",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_98",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I10_60",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"I10_64",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"I10_70",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"I10_73",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"R4_24",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_26",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_30",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_32",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_62",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_83",
"Factors":{"time_point":"R4"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"tissue was harvested, flash frozen in LiN2, milled with LiN2, and weighed on dry ice for metabolomics analysis"},

"TREATMENT":{"TREATMENT_SUMMARY":"Tissues were harvested at the appropriate time point during or post-pregnancy"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Frozen and milled liver tissue was suspended to 10 mg/ml in an extraction solution containing methanol/acetonitrile/water at a ratio of 5:3:2 (v/v/v). Suspensions were vortexed at 4C for 30 minutes and centrifuged at 10,000 g for 10 minutes, 4C. Supernatants were isolated and analyzed by LC-MS."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Vanquish","COLUMN_NAME":"Kinetex XB-C18"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"arbitrary units",

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}

}