{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000509","ANALYSIS_ID":"AN000781","VERSION":"1","CREATED_ON":"December 5, 2016, 12:43 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolic changes to maternal rat liver tissue during and post-pregnancy.","PROJECT_TYPE":"global MS analysis","PROJECT_SUMMARY":"Assessing metabolic changes to maternal rat liver tissue during and post-pregnancy. Liver tissue was harvested post-mortem from rats or mice without pregnancy (Nulliparous - NP), time course during pregnancy in days (P2-4, P11-13m P18-20), lactation day 10 (LD10), in during involution of the liver (I2, I4, I6, I8, I10) and 4-weeks regression after preganancy (R4).","INSTITUTE":"University of Colorado, Denver","LAST_NAME":"Nemkov","FIRST_NAME":"Travis","ADDRESS":"12801 E 17th Avenue, RC-1 South, Rm 9403G, Aurora, CO, 80045, USA","EMAIL":"travis.nemkov@ucdenver.edu","PHONE":"303-724-5798"},

"STUDY":{"STUDY_TITLE":"Metabolic changes to maternal rat liver tissue during and post-pregnancy","STUDY_SUMMARY":"Assessing metabolic changes to maternal rat liver tissue during and post-pregnancy. Liver tissue was harvested post-mortem from rats or mice without pregnancy (Nulliparous - NP), time course during pregnancy in days (P2-4, P11-13m P18-20), lactation day 10 (LD10), in during involution of the liver (I2, I4, I6, I8, I10) and 4-weeks regression after preganancy (R4).","INSTITUTE":"University of Colorado Denver","LAST_NAME":"Nemkov","FIRST_NAME":"Travis","ADDRESS":"12801 E 17th Avenue RC-1 South, Mail stop 8101","EMAIL":"travis.nemkov@ucdenver.edu","PHONE":"303-724-5798"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Rattus norvegicus","TAXONOMY_ID":"10116"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"NP_2",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_3",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_57",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_58",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_91",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"NP_102",
"Factors":{"time_point":"NP"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_10",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_11",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_12",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_13",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P2-4_14",
"Factors":{"time_point":"P2-4"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_16",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_17",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_18",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P11-13_25",
"Factors":{"time_point":"P11-13"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_7",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_15",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_23",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_61",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_69",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"P18-20_76",
"Factors":{"time_point":"P18-20"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_9",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_22",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_31",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_99",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"LD10_103",
"Factors":{"time_point":"LD10"}
},
{
"Subject ID":"-",
"Sample ID":"I2_79",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_90",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_92",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_93",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I2_104",
"Factors":{"time_point":"I2"}
},
{
"Subject ID":"-",
"Sample ID":"I4_71",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I4_72",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I4_96",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I4_101",
"Factors":{"time_point":"I4"}
},
{
"Subject ID":"-",
"Sample ID":"I6_66",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_77",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_81",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_94",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I6_95",
"Factors":{"time_point":"I6"}
},
{
"Subject ID":"-",
"Sample ID":"I8_63",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_67",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_74",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_75",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_97",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I8_98",
"Factors":{"time_point":"I8"}
},
{
"Subject ID":"-",
"Sample ID":"I10_60",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"I10_64",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"I10_70",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"I10_73",
"Factors":{"time_point":"I10"}
},
{
"Subject ID":"-",
"Sample ID":"R4_24",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_26",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_30",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_32",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_62",
"Factors":{"time_point":"R4"}
},
{
"Subject ID":"-",
"Sample ID":"R4_83",
"Factors":{"time_point":"R4"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"tissue was harvested, flash frozen in LiN2, milled with LiN2, and weighed on dry ice for metabolomics analysis"},

"TREATMENT":{"TREATMENT_SUMMARY":"Tissues were harvested at the appropriate time point during or post-pregnancy"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Frozen and milled liver tissue was suspended to 10 mg/ml in an extraction solution containing methanol/acetonitrile/water at a ratio of 5:3:2 (v/v/v). Suspensions were vortexed at 4C for 30 minutes and centrifuged at 10,000 g for 10 minutes, 4C. Supernatants were isolated and analyzed by LC-MS."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Vanquish","COLUMN_NAME":"Kinetex XB-C18"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"arbitrary units",

"Data":[{"Metabolite":"ADP","NP_2":"121000.00","NP_3":"152000.00","NP_57":"133000.00","NP_58":"51500.00","NP_91":"114000.00","NP_102":"87000.00","P2-4_10":"154000.00","P2-4_11":"183000.00","P2-4_12":"159000.00","P2-4_13":"159000.00","P2-4_14":"248000.00","P11-13_16":"240000.00","P11-13_17":"234000.00","P11-13_18":"196000.00","P11-13_25":"219000.00","P18-20_7":"227000.00","P18-20_15":"179000.00","P18-20_23":"164000.00","P18-20_61":"234000.00","P18-20_69":"195000.00","P18-20_76":"231000.00","LD10_9":"160000.00","LD10_22":"200000.00","LD10_31":"294000.00","LD10_99":"151000.00","LD10_103":"164000.00","I2_79":"180000.00","I2_90":"159000.00","I2_92":"201000.00","I2_93":"205000.00","I2_104":"202000.00","I4_71":"187000.00","I4_72":"139000.00","I4_96":"261000.00","I4_101":"299000.00","I6_66":"223000.00","I6_77":"185000.00","I6_81":"228000.00","I6_94":"342000.00","I6_95":"243000.00","I8_63":"228000.00","I8_67":"185000.00","I8_74":"190000.00","I8_75":"217000.00","I8_97":"185000.00","I8_98":"203000.00","I10_60":"236000.00","I10_64":"228000.00","I10_70":"71500.00","I10_73":"230000.00","R4_24":"181000.00","R4_26":"164000.00","R4_30":"172293.50","R4_32":"191760.70","R4_62":"200735.50","R4_83":"184041.60"},{"Metabolite":"4-Pyridoxate","NP_2":"382000.00","NP_3":"492000.00","NP_57":"619000.00","NP_58":"701000.00","NP_91":"534000.00","NP_102":"537000.00","P2-4_10":"574000.00","P2-4_11":"501000.00","P2-4_12":"476000.00","P2-4_13":"479000.00","P2-4_14":"725000.00","P11-13_16":"546000.00","P11-13_17":"650000.00","P11-13_18":"652000.00","P11-13_25":"666000.00","P18-20_7":"936000.00","P18-20_15":"622000.00","P18-20_23":"777000.00","P18-20_61":"956000.00","P18-20_69":"1170000.00","P18-20_76":"851000.00","LD10_9":"1260000.00","LD10_22":"1020000.00","LD10_31":"804000.00","LD10_99":"1310000.00","LD10_103":"1500000.00","I2_79":"1160000.00","I2_90":"1590000.00","I2_92":"1530000.00","I2_93":"878000.00","I2_104":"589000.00","I4_71":"691000.00","I4_72":"534000.00","I4_96":"960000.00","I4_101":"532000.00","I6_66":"481000.00","I6_77":"823000.00","I6_81":"823000.00","I6_94":"529000.00","I6_95":"597000.00","I8_63":"548000.00","I8_67":"600000.00","I8_74":"657000.00","I8_75":"527000.00","I8_97":"774000.00","I8_98":"1070000.00","I10_60":"546000.00","I10_64":"684000.00","I10_70":"539000.00","I10_73":"467000.00","R4_24":"369000.00","R4_26":"438000.00","R4_30":"406191.30","R4_32":"383293.10","R4_62":"587666.60","R4_83":"498011.20"},{"Metabolite":"Orthophosphate","NP_2":"105000000.00","NP_3":"114000000.00","NP_57":"86500000.00","NP_58":"67700000.00","NP_91":"83700000.00","NP_102":"85700000.00","P2-4_10":"114000000.00","P2-4_11":"93400000.00","P2-4_12":"102000000.00","P2-4_13":"102000000.00","P2-4_14":"118000000.00","P11-13_16":"140000000.00","P11-13_17":"111000000.00","P11-13_18":"90500000.00","P11-13_25":"104000000.00","P18-20_7":"124000000.00","P18-20_15":"145000000.00","P18-20_23":"122000000.00","P18-20_61":"125000000.00","P18-20_69":"110000000.00","P18-20_76":"137000000.00","LD10_9":"132000000.00","LD10_22":"135000000.00","LD10_31":"101000000.00","LD10_99":"133000000.00","LD10_103":"125000000.00","I2_79":"131000000.00","I2_90":"165000000.00","I2_92":"136000000.00","I2_93":"124000000.00","I2_104":"135000000.00","I4_71":"113000000.00","I4_72":"125000000.00","I4_96":"111000000.00","I4_101":"102000000.00","I6_66":"140000000.00","I6_77":"119000000.00","I6_81":"106000000.00","I6_94":"93600000.00","I6_95":"133000000.00","I8_63":"126000000.00","I8_67":"159000000.00","I8_74":"105000000.00","I8_75":"127000000.00","I8_97":"134000000.00","I8_98":"119000000.00","I10_60":"153000000.00","I10_64":"123000000.00","I10_70":"154000000.00","I10_73":"141000000.00","R4_24":"127000000.00","R4_26":"111000000.00","R4_30":"139362500.00","R4_32":"102985600.00","R4_62":"126984400.00","R4_83":"116660600.00"},{"Metabolite":"Diphosphate","NP_2":"6780000.00","NP_3":"8290000.00","NP_57":"5260000.00","NP_58":"3940000.00","NP_91":"4950000.00","NP_102":"5480000.00","P2-4_10":"8330000.00","P2-4_11":"4930000.00","P2-4_12":"7110000.00","P2-4_13":"5960000.00","P2-4_14":"7120000.00","P11-13_16":"9520000.00","P11-13_17":"5980000.00","P11-13_18":"4840000.00","P11-13_25":"5770000.00","P18-20_7":"8280000.00","P18-20_15":"8190000.00","P18-20_23":"6660000.00","P18-20_61":"7990000.00","P18-20_69":"5950000.00","P18-20_76":"10800000.00","LD10_9":"10300000.00","LD10_22":"9320000.00","LD10_31":"5910000.00","LD10_99":"9050000.00","LD10_103":"7670000.00","I2_79":"7810000.00","I2_90":"12600000.00","I2_92":"8980000.00","I2_93":"8120000.00","I2_104":"10400000.00","I4_71":"6200000.00","I4_72":"7450000.00","I4_96":"7140000.00","I4_101":"6520000.00","I6_66":"11300000.00","I6_77":"7120000.00","I6_81":"8270000.00","I6_94":"7620000.00","I6_95":"9730000.00","I8_63":"10000000.00","I8_67":"13000000.00","I8_74":"7070000.00","I8_75":"8960000.00","I8_97":"9350000.00","I8_98":"8020000.00","I10_60":"13800000.00","I10_64":"8630000.00","I10_70":"12400000.00","I10_73":"10200000.00","R4_24":"8990000.00","R4_26":"7650000.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6-phosphate","NP_2":"56400000.00","NP_3":"47900000.00","NP_57":"41800000.00","NP_58":"32600000.00","NP_91":"41300000.00","NP_102":"21500000.00","P2-4_10":"40000000.00","P2-4_11":"46500000.00","P2-4_12":"56300000.00","P2-4_13":"41500000.00","P2-4_14":"53900000.00","P11-13_16":"48900000.00","P11-13_17":"62600000.00","P11-13_18":"74800000.00","P11-13_25":"85300000.00","P18-20_7":"92700000.00","P18-20_15":"120000000.00","P18-20_23":"106000000.00","P18-20_61":"51200000.00","P18-20_69":"74500000.00","P18-20_76":"41900000.00","LD10_9":"75600000.00","LD10_22":"70300000.00","LD10_31":"77400000.00","LD10_99":"62500000.00","LD10_103":"78800000.00","I2_79":"75600000.00","I2_90":"49800000.00","I2_92":"72400000.00","I2_93":"60800000.00","I2_104":"38400000.00","I4_71":"87400000.00","I4_72":"87500000.00","I4_96":"66800000.00","I4_101":"64700000.00","I6_66":"46800000.00","I6_77":"74300000.00","I6_81":"40800000.00","I6_94":"49000000.00","I6_95":"33100000.00","I8_63":"25700000.00","I8_67":"31000000.00","I8_74":"33900000.00","I8_75":"38700000.00","I8_97":"48800000.00","I8_98":"58000000.00","I10_60":"23800000.00","I10_64":"53600000.00","I10_70":"21500000.00","I10_73":"33500000.00","R4_24":"61600000.00","R4_26":"42300000.00","R4_30":"42085720.00","R4_32":"64760090.00","R4_62":"34724520.00","R4_83":"36125030.00"},{"Metabolite":"D-Fructose 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}