{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000583","ANALYSIS_ID":"AN000894","VERSION":"1","CREATED_ON":"April 10, 2017, 4:13 pm"},

"PROJECT":{"PROJECT_TITLE":"The Metabolomics of Oral Biofilms exposed to Arginine and Fluoride","PROJECT_TYPE":"Cariology, Oral Microbiology","PROJECT_SUMMARY":"The study aims to use global metabolomics to investigate: (1) the metabolic profile of supragingival dental plaque from adults with different caries-status and from specific healthy and carious tooth-sites; and (2) the metabolic changes occurring in response to the use of the arginine or fluoride toothpastes for 12 weeks.","INSTITUTE":"University of Florida","DEPARTMENT":"Restorative Dental Sciences","LABORATORY":"Nascimento","LAST_NAME":"Nascimento","FIRST_NAME":"Marcelle","ADDRESS":"1395 Center Drive, Room D9-6, PO Box 100415, Gainesville, FL 32610-0415","EMAIL":"mnascimento@dental.ufl.edu","PHONE":"3522735858","FUNDING_SOURCE":"Colgate Palmolive"},

"STUDY":{"STUDY_TITLE":"The Metabolomics of Oral Biofilms exposed to Arginine and Fluoride","STUDY_SUMMARY":"The study aims to use global metabolomics to investigate: (1) the metabolic profile of supragingival dental plaque from adults with different caries-status and from specific healthy and carious tooth-sites; and (2) the metabolic changes occurring in response to the use of the arginine or fluoride toothpastes for 12 weeks.","INSTITUTE":"University of Florida","DEPARTMENT":"SECIM","LABORATORY":"Nascimento/Garrett","LAST_NAME":"Nascimento","FIRST_NAME":"Marcelle","ADDRESS":"1395 Center Drive, Room D9-6, PO Box 100415, Gainesville, FL 32610-0415","EMAIL":"mnascimento@dental.ufl.edu","PHONE":"3522735858","NUM_GROUPS":"1","TOTAL_SUBJECTS":"61"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","GENOTYPE_STRAIN":"Contains oral bacteria species","AGE_OR_AGE_RANGE":"18-65 years","GENDER":"F/M","HUMAN_RACE":"Various","HUMAN_ETHNICITY":"Various","HUMAN_LIFESTYLE_FACTORS":"Various","HUMAN_MEDICATIONS":"None","HUMAN_PRESCRIPTION_OTC":"None","HUMAN_SMOKING_STATUS":"None","HUMAN_ALCOHOL_DRUG_USE":"None","HUMAN_NUTRITION":"Various","HUMAN_INCLUSION_CRITERIA":"Age 18 to 65 years, caries-free or caries-actie, no systemic disease"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"IMF 25  PF1",
"Sample ID":"G1_6",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.3433","volume (ul)":"20"}
},
{
"Subject ID":"IMF 26  PF1",
"Sample ID":"G1_7",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.7234","volume (ul)":"20"}
},
{
"Subject ID":"IMF 29  PF1",
"Sample ID":"G1_8",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.6885","volume (ul)":"20"}
},
{
"Subject ID":"IMF 04 PF1",
"Sample ID":"G1_9",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.6621","volume (ul)":"20"}
},
{
"Subject ID":"IMF 14  PF1",
"Sample ID":"G1_10",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.4606","volume (ul)":"20"}
},
{
"Subject ID":"VMF 25  PF1",
"Sample ID":"G2_6",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.6679","volume (ul)":"20"}
},
{
"Subject ID":"VMF 26  PF1",
"Sample ID":"G2_7",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.8304","volume (ul)":"20"}
},
{
"Subject ID":"VMF 29  PF1",
"Sample ID":"G2_8",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.9816","volume (ul)":"20"}
},
{
"Subject ID":"VMF 04 PF1",
"Sample ID":"G2_9",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"1.0244","volume (ul)":"20"}
},
{
"Subject ID":"VMF 14  PF1",
"Sample ID":"G2_10",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5233","volume (ul)":"20"}
},
{
"Subject ID":"IMF 35  PF1",
"Sample ID":"G3_6",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.1458","volume (ul)":"20"}
},
{
"Subject ID":"IMF 36  PF1",
"Sample ID":"G3_7",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.1887","volume (ul)":"20"}
},
{
"Subject ID":"IMF 37  PF1",
"Sample ID":"G3_8",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.1655","volume (ul)":"20"}
},
{
"Subject ID":"IMF 05  PF1",
"Sample ID":"G3_9",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.5716","volume (ul)":"20"}
},
{
"Subject ID":"IMF 10  PF1",
"Sample ID":"G3_10",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.8247","volume (ul)":"20"}
},
{
"Subject ID":"VMF 35  PF1",
"Sample ID":"G4_6",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.7629","volume (ul)":"20"}
},
{
"Subject ID":"VMF 36  PF1",
"Sample ID":"G4_7",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.7088","volume (ul)":"20"}
},
{
"Subject ID":"VMF 37  PF1",
"Sample ID":"G4_8",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.4492","volume (ul)":"20"}
},
{
"Subject ID":"VMF 05  PF1",
"Sample ID":"G4_9",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.3821","volume (ul)":"20"}
},
{
"Subject ID":"VMF 10  PF1",
"Sample ID":"G4_10",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.7113","volume (ul)":"20"}
},
{
"Subject ID":"IMA 29 PF1",
"Sample ID":"G5_6",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.3599","volume (ul)":"20"}
},
{
"Subject ID":"IMA 31 PF1",
"Sample ID":"G5_7",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.4622","volume (ul)":"20"}
},
{
"Subject ID":"IMA 35 PF1",
"Sample ID":"G5_8",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.4273","volume (ul)":"20"}
},
{
"Subject ID":"IMA 36 PF1",
"Sample ID":"G5_9",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.6599","volume (ul)":"20"}
},
{
"Subject ID":"IMA 40 PF1",
"Sample ID":"G5_10",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.3647","volume (ul)":"20"}
},
{
"Subject ID":"VMA 29 PF1",
"Sample ID":"G6_6",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.4643","volume (ul)":"20"}
},
{
"Subject ID":"VMA 31 PF1",
"Sample ID":"G6_7",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5234","volume (ul)":"20"}
},
{
"Subject ID":"VMA 35 PF1",
"Sample ID":"G6_8",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5355","volume (ul)":"20"}
},
{
"Subject ID":"VMA 36 PF1",
"Sample ID":"G6_9",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5384","volume (ul)":"20"}
},
{
"Subject ID":"VMA 40 PF1",
"Sample ID":"G6_10",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.6843","volume (ul)":"20"}
},
{
"Subject ID":"IMA 20 PF1",
"Sample ID":"G7_6",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.5780","volume (ul)":"20"}
},
{
"Subject ID":"IMA 24 PF1",
"Sample ID":"G7_7",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.3937","volume (ul)":"20"}
},
{
"Subject ID":"IMA 33 PF1",
"Sample ID":"G7_8",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.7731","volume (ul)":"20"}
},
{
"Subject ID":"IMA 44 PF1",
"Sample ID":"G7_9",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"1.0038","volume (ul)":"20"}
},
{
"Subject ID":"IMA 45 PF1",
"Sample ID":"G7_10",
"Factors":{"caries status":"caries-free","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"1.0219","volume (ul)":"20"}
},
{
"Subject ID":"VMA 20 PF1",
"Sample ID":"G8_6",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.704","volume (ul)":"20"}
},
{
"Subject ID":"VMA 24 PF1",
"Sample ID":"G8_7",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.4545","volume (ul)":"20"}
},
{
"Subject ID":"VMA 33 PF1",
"Sample ID":"G8_8",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5701","volume (ul)":"20"}
},
{
"Subject ID":"VMA 44 PF1",
"Sample ID":"G8_9",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"1.1266","volume (ul)":"20"}
},
{
"Subject ID":"VMA 45 PF1",
"Sample ID":"G8_10",
"Factors":{"caries status":"caries-free","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.9837","volume (ul)":"20"}
},
{
"Subject ID":"IMA 40 PE1",
"Sample ID":"G9_6",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.9099","volume (ul)":"20"}
},
{
"Subject ID":"IMA 41 PE1",
"Sample ID":"G9_7",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.4893","volume (ul)":"20"}
},
{
"Subject ID":"VMA 40 PE1",
"Sample ID":"G10_6",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.683","volume (ul)":"20"}
},
{
"Subject ID":"VMA 41 PE1",
"Sample ID":"G10_7",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.6077","volume (ul)":"20"}
},
{
"Subject ID":"IMA 24 PE1",
"Sample ID":"G11_6",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.8428","volume (ul)":"20"}
},
{
"Subject ID":"VMA 24 PE1",
"Sample ID":"G12_6",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5554","volume (ul)":"20"}
},
{
"Subject ID":"IMA 25 PD1",
"Sample ID":"G13_6",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.6175","volume (ul)":"20"}
},
{
"Subject ID":"IMA 29 PD1",
"Sample ID":"G13_7",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.2778","volume (ul)":"20"}
},
{
"Subject ID":"IMA 36 PD1",
"Sample ID":"G13_8",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.3428","volume (ul)":"20"}
},
{
"Subject ID":"IMA 40 PD1",
"Sample ID":"G13_9",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.1304","volume (ul)":"20"}
},
{
"Subject ID":"VMA 25 PD1",
"Sample ID":"G14_6",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.4187","volume (ul)":"20"}
},
{
"Subject ID":"VMA 29 PD1",
"Sample ID":"G14_7",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.3398","volume (ul)":"20"}
},
{
"Subject ID":"VMA 35 PD1",
"Sample ID":"G14_8",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.3731","volume (ul)":"20"}
},
{
"Subject ID":"VMA 36 PD1",
"Sample ID":"G14_9",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.5561","volume (ul)":"20"}
},
{
"Subject ID":"VMA 40 PD1",
"Sample ID":"G14_10",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.8399","volume (ul)":"20"}
},
{
"Subject ID":"IMA 33 PD1",
"Sample ID":"G15_6",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.4735","volume (ul)":"20"}
},
{
"Subject ID":"IMA 44 PD1",
"Sample ID":"G15_7",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.553","volume (ul)":"20"}
},
{
"Subject ID":"IMA 45 PD1",
"Sample ID":"G15_8",
"Factors":{"caries status":"caries-active","time":"baseline"},
"Additional sample data":{"protein levels (mg/ml)":"0.5409","volume (ul)":"20"}
},
{
"Subject ID":"VMA 33 PD1",
"Sample ID":"G16_6",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.3404","volume (ul)":"20"}
},
{
"Subject ID":"VMA 44 PD1",
"Sample ID":"G16_7",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.4111","volume (ul)":"20"}
},
{
"Subject ID":"VMA 45 PD1",
"Sample ID":"G16_8",
"Factors":{"caries status":"caries-active","time":"12-weeks"},
"Additional sample data":{"protein levels (mg/ml)":"0.3718","volume (ul)":"20"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Supragingival plaque samples were collected from specific tooth sites using sterile dental curetes.","SAMPLE_TYPE":"Plaque samples","COLLECTION_METHOD":"Scrapping of tooth surfaces","COLLECTION_LOCATION":"Multiple teeth","COLLECTION_FREQUENCY":"Once","COLLECTION_DURATION":"5 min","VOLUMEORAMOUNT_COLLECTED":"250ul","STORAGE_CONDITIONS":"freezer at -80","COLLECTION_VIALS":"eppendorfs containing phosphate buffer pH 7.0","STORAGE_VIALS":"eppendorfs containing phosphate buffer pH 7.0","COLLECTION_TUBE_TEMP":"4"},

"TREATMENT":{"TREATMENT_SUMMARY":"Subjects made use for 12 weeks of either a fluoride-free 1.5% arginine toothpaste or a fluoride containing toothpaste (1100 ppm F as NaF)."},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"None","SAMPLEPREP_PROTOCOL_FILENAME":"Metabolomics_LCMSProtocol_plasma.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Scientific-Dionex Ultimate 3000","COLUMN_NAME":"ACE Excel 2 C18-PFP (100 x 2.1mm, 2um)","METHODS_FILENAME":"Metabolomics_LCMSProtocol_plasma.pdf"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"Metabolomics_LCMSProtocol_plasma.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_RESULTS_FILE":"ST000583_AN000894_Results.txt"},

"MS_METABOLITE_DATA":{
"Units":"Peak Height",

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