{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000599","ANALYSIS_ID":"AN000918","VERSION":"1","CREATED_ON":"May 5, 2017, 4:57 pm"},

"PROJECT":{"PROJECT_TITLE":"The Malaria Host-Pathogen Interaction Center (MaHPIC)","PROJECT_TYPE":"Systems Biology","PROJECT_SUMMARY":"The Malaria Host-Pathogen Interaction Center (MaHPIC) is a transdisciplinary malaria systems biology research program supported by an NIH/NIAID contract (# HHSN272201200031C; see http://www.systemsbiology.emory.edu). The MaHPIC generates many data types (e.g., clinical, parasitological, metabolomics, functional genomics, lipidomics, proteomics, immune response) and mathematical models, to iteratively test and develop hypotheses related to the complex host-parasite dynamics in the course of malaria in non-human primates, and metabolomics data via collaborations with investigators conducting clinical studies in malaria endemic countries, with the overarching goal of better understanding human disease, pathogenesis, and immunity. Curation and maintenance of all data and metadata are the responsibility of the MaHPIC.","INSTITUTE":"Emory University","DEPARTMENT":"School of Medicine, Vaccine Center at Yerkes","LAST_NAME":"Galinski","FIRST_NAME":"Mary","ADDRESS":"Emory University, 954 Gatewood Rd, Room 208, Atlanta, GA 30329","EMAIL":"mahpic@emory.edu","PHONE":"N/A","FUNDING_SOURCE":"NIAID Contract: # HHSN272201200031C"},

"STUDY":{"STUDY_TITLE":"Metabolomics measures of Macaca mulatta infected with Plasmodium coatneyi Hackeri strain to produce and integrate clinical, hematological, parasitological, and omics measures of acute, recrudescent, and chronic infections.","STUDY_TYPE":"Longitudinal parasite infection and treatment of multiple individuals","STUDY_SUMMARY":"Malaria-naive male rhesus macaques (Macaca mulatta), approximately four years of age, were inoculated intravenously with salivary gland sporozoites produced and isolated at the Centers for Disease Control and Prevention from multiple Anopheles species (An. dirus, An. gambiae, and An. stephensi) and then profiled for clinical, hematological, parasitological, immunological, functional genomic, lipidomic, proteomic, and metabolomic measurements. The experiment was designed for 100 days, and pre- and post-100 day periods to prepare subjects and administer curative treatments respectively. The anti-malarial drug artemether was subcuratively administered to all subjects at the initial peak of infection, one out of the five macaques received four additional subcurative treatments for subsequent recrudescence peaks. The experimental infection in one subject was ineffective but the macaque was followed-up for the same period of 100 days. The different clinical phases of the infection were clinically determined for each subject. Blood-stage curative doses of artemether were administered to all subjects at the end of the study. Capillary blood samples were collected daily for the measurement of CBCs, reticulocytes, and parasitemias. Capillary blood samples were collected every other day to obtain plasma for metabolomic analysis. Venous blood and bone marrow samples were collected at seven time points for functional genomic, proteomic, lipidomic, and immunological analyses. Within the MaHPIC, this project is known as ‘Experiment 03’. This dataset was produced by Dean Jones at Emory University. The experimental design and protocols for this study were approved by the Emory University Institutional Animal Care and Use Committee (IACUC).","INSTITUTE":"Emory University","DEPARTMENT":"School of Medicine, Vaccine Center at Yerkes","LAST_NAME":"Galinski","FIRST_NAME":"Mary","ADDRESS":"Emory University, Yerkes National Primate Research Center, 954 Gatewood Rd, Room 003, Atlanta, GA 30329","EMAIL":"mahpic@emory.edu","PHONE":"N/A","NUM_GROUPS":"6","TOTAL_SUBJECTS":"331","STUDY_COMMENTS":"The experimental design and protocols for this study were approved by the Emory University Institutional Animal Care and Use Committee (IACUC). These results are a product of a consortium of researchers known as the Malaria Host Pathogen Interaction Center (MaHPIC). Contributors include: Monica Cabrera, Jeremy D. DeBarry, Mary G. Galinski, Jay Humphrey, Dean Jones, Ebru Karpuzoglu, Jessica C. Kissinger, Regina Joice, Esmeralda Meyer, Vishal Nayak, Mustafa Nural, Suman Pakala, ViLinh Tran, Karan Uppal, Loukia Williams. For more information on the MaHPIC, please visit http://www.systemsbiology.emory.edu/ . Within the MaHPIC, these data were collected as part of 'Experiment 03' (E03). To access other publicly available results from E03 and other MaHPIC Experiments, including clinical results (specifics on drugs administered, diet, and veterinary interventions), and other omics, visit http://plasmodb.org/plasmo/mahpic.jsp . This page will be updated as datasets are released to the public."},

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"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"76","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2181255",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"78","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2181266",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"79","Collection Type":"Time Point 5"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2185865",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"80","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2185919",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"82","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2187631",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"84","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2189755",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"86","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2190646",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"88","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2191594",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"90","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2190002",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"91","Collection Type":"Time Point 6"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2193677",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"92","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2195831",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"94","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2195885",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"96","Collection Type":"Every Other Day"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2195440",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"98","Collection Type":"Time Point 7"}
},
{
"Subject ID":"RZe13",
"Sample ID":"2206600",
"Factors":{"Gender":"Male","Prior Infection":"None","Days since Inoculation":"100","Collection Type":"Every Other Day"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200104",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200129",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991100044",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, from NIST"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200122",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200107",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200111",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200109",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200128",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200095",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200099",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200091",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200132",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200118",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200120",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200085",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200083",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991100041",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, from NIST"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200093",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200102",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200116",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200125",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200119",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200127",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200115",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200105",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200100",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200081",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200090",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200086",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200123",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200124",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200114",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200103",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200084",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200126",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200082",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200088",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200096",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200113",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991100043",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, from NIST"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200131",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200121",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200089",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200097",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991100042",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, from NIST"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200094",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200110",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200112",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200108",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200130",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200101",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200092",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200106",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200098",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200117",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
},
{
"Subject ID":"N/A",
"Sample ID":"9991200087",
"Factors":{"Gender":"N/A","Prior Infection":"N/A","Days since Inoculation":"N/A","Collection Type":"QC Sample, in-lab prepared"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Every Other Day Collection | Time Point 1 Baseline: Uninfected control for each Non-Human Primate (NHP). | Time Point 2 Peak of infection: Peak of infection determined by clinical and parasitological assessment for each NHP. The time point is intended to characterize the host immune response and capture multi-omics data during the peak of parasitemias when the NHP is experiencing clinical signs of disease that are commonly severe in P. coatneyi infections. NHPs were monitored based on clinical and hematological parameters, and clinical interventions with artemether were performed as necessary. | Time Point 3 Post-peak: Observations 7 days after peak infection and sub-curative treatment. | Time Point 4 Recrudescence Peak: This time point tested expectations of a drop in hemoglobin levels and increase in parasitemias due to recrudescence from a chronic infection. After sample collection, NHPs received sub-curative treatment with artemether based on clinical and hematological parameters. | Time Point 5 Post-peak: Chronic infection with low levels of persistent parasitemia that may be below detectable levels. | Time Point 6 Recrudescence Peak: Same goal as time point 4 for 2nd second recrudescence peak. | Time Point 7 Post-peak: Observations of NHP response after a second recrudescence in a chronic phase with low levels of persistent parasitemia.","SAMPLE_TYPE":"Whole blood|Whole blood|Whole blood|Whole blood|Whole blood|Whole blood|Whole blood|Whole blood","COLLECTION_METHOD":"Ear Prick|Intravenous|Intravenous|Intravenous|Intravenous|Intravenous|Intravenous|Intravenous","COLLECTION_FREQUENCY":"Every Other Day|Once|Once|Once|Once|Once|Once|Once","BLOOD_SERUM_OR_PLASMA":"Plasma|Plasma|Plasma|Plasma|Plasma|Plasma|Plasma|Plasma"},

"TREATMENT":{"TREATMENT_SUMMARY":"Plasmodium Coatneyi Hackeri Strain Sporozoites Inoculation","TREATMENT":"Biotic","TREATMENT_ROUTE":"Injection"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"aliquots of 30ul sample were mixed with 100ul acetonitrile and 2.5ul internal standard. Keep on ice for 30 minutes and vortex every 15 minutes. Centrifuge for 10 minutes at 13.2rpm and 4C. Using a pipette, 100ul of supernatant was removed and placed into autosampler vials for the mass spectrometer.","SAMPLEPREP_PROTOCOL_FILENAME":"E03_MB_Sample_Preparations_Plasma_serum_HFQE_V1_3282016.docx, E4_E3_E18_E23_E24_E25_MalariaCore_Metabolomics SOP_v1_6October2016.docx","PROCESSING_METHOD":"Precipitation of protein, centrifuge, and remove supernatant","PROCESSING_STORAGE_CONDITIONS":"On ice","EXTRACTION_METHOD":"1:2 sample:acetonitrile","EXTRACT_STORAGE":"Pipette supernatant into autosampler vials for mass spectrometer","SAMPLE_SPIKING":"C18 Standards: Caffeine, Diethyl-toluamide. Internal Standards/Stable Isotopes: [13C6]-D-glucose, [15N]-indole, [15N,13C5]-L-methionine, [2-15N]-L-lysine dihydrochloride, [13C5]-L-glutamic acid, [15N]-L-tyrosine, [15N2]-uracil, [3,3-13C2]-cystine, [trimethyl-13C3]-caffeine, [U-13C5, U-15N2]-L-glutamine"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"C18 120k resolution method with C18 positive and negative wash","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","COLUMN_NAME":"Thermo Accucore C18 (100 x 2.1mm, 2.6um)","FLOW_GRADIENT":"A: 0-2mins = 80%, 2-7mins = gradient to 0%, 7-10mins = 0%. B: 0-2mins = 15%, 2-7mins = gradient to 95%, 7-10mins = 95%. C: 0-10mins = 5%","FLOW_RATE":"350μL/min","COLUMN_TEMPERATURE":"30","METHODS_FILENAME":"E3_MB_HFQE Setup_V1_3282016.docx","SOLVENT_A":"LCMS H20","SOLVENT_B":"LCMS Acetonitrile","COLUMN_PRESSURE":"200 Bar (max)","INTERNAL_STANDARD":"Cystine; cysteine-glutathione disulfide; carboxymethyl-cysteine (very low); glutathione disulfide (+1 and +2); carboxymethyl-glutathione","INTERNAL_STANDARD_MT":"1.5 min, 6-6.6 min","SAMPLE_INJECTION":"10μL","SAMPLING_CONE":"HESI probe with S-lens combination for ESI","ANALYTICAL_TIME":"10 minutes","CAPILLARY_VOLTAGE":"4.6 kV","OVEN_TEMPERATURE":"45C","WEAK_WASH_SOLVENT_NAME":"H20 with 10% methanol","SAMPLE_SYRINGE_SIZE":"20μL"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"Clinical Biomarkers Laboratory, Emory University","OPERATOR_NAME":"ViLinh Tran and Karan Uppal","DETECTOR_TYPE":"Orbitrap","SOFTWARE_VERSION":"Thermo Excalibur 2.2 SP1","ACQUISITION_DATE":"4/17/15-5/1/15","DATA_FORMAT":".raw, .cdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","CAPILLARY_TEMPERATURE":"300","CAPILLARY_VOLTAGE":"4.45","COLLISION_GAS":"N2","GAS_PRESSURE":"50 psi","IONIZATION":"electrospray ionization","MASS_ACCURACY":"5ppm","SOURCE_TEMPERATURE":"48","SPRAY_VOLTAGE":"3.5","ATOM_GUN_CURRENT":"1000000","DATAFORMAT":".raw, .cdf","PROBE_TIP":"HESI","RESOLUTION_SETTING":"120000","SCAN_RANGE_MOVERZ":"85-1275","MS_RESULTS_FILE":"ST000599_AN000918_Results.txt UNITS:Ion Intensity"}

}