{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000831","ANALYSIS_ID":"AN001325","VERSION":"1","CREATED_ON":"August 8, 2017, 3:39 pm"},

"PROJECT":{"PROJECT_TITLE":"The role of the gut microbiota in secondary bile acid metabolism","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Targeted bile acid metabolomics","INSTITUTE":"North Carolina State University","DEPARTMENT":"Population Health and Pathobiology","LABORATORY":"Theriot Lab","LAST_NAME":"Theriot","FIRST_NAME":"Casey","ADDRESS":"Raleigh, NC","EMAIL":"caseythe@umich.edu","PHONE":"734-763-4133"},

"STUDY":{"STUDY_TITLE":"Bile acid analysis of the germ free mouse gut","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"We are interested in understanding the bile acid profiles from the feces of fecal microbiota transplant FMT patients that successfully recover from recurrent C. difficile infection. We have are submitting fecal samples from patients prior to their FMT and post FMT. We are also interested in the bile acid profiles of the donor stool that is used in successful transplants. Bile acids are important for C. difficile spore germination and outgrowth.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"6","TOTAL_SUBJECTS":"4"},

"SUBJECT":{"SUBJECT_TYPE":"MOUSE","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0013551",
"Sample ID":"S00020458",
"Factors":{"GENDER":"male","Sample type":"Serum"}
},
{
"Subject ID":"SU0013551",
"Sample ID":"S00020459",
"Factors":{"GENDER":"male","Sample type":"Ileum"}
},
{
"Subject ID":"SU0013551",
"Sample ID":"S00020460",
"Factors":{"GENDER":"male","Sample type":"Cecum"}
},
{
"Subject ID":"SU0013551",
"Sample ID":"S00020461",
"Factors":{"GENDER":"male","Sample type":"Colon"}
},
{
"Subject ID":"SU0013555",
"Sample ID":"S00020462",
"Factors":{"GENDER":"male","Sample type":"Serum"}
},
{
"Subject ID":"SU0013555",
"Sample ID":"S00020463",
"Factors":{"GENDER":"male","Sample type":"Ileum"}
},
{
"Subject ID":"SU0013555",
"Sample ID":"S00020464",
"Factors":{"GENDER":"male","Sample type":"Cecum"}
},
{
"Subject ID":"SU0013555",
"Sample ID":"S00020465",
"Factors":{"GENDER":"male","Sample type":"Colon"}
},
{
"Subject ID":"SU0013559",
"Sample ID":"S00020466",
"Factors":{"GENDER":"female","Sample type":"Serum"}
},
{
"Subject ID":"SU0013559",
"Sample ID":"S00020467",
"Factors":{"GENDER":"female","Sample type":"Ileum"}
},
{
"Subject ID":"SU0013559",
"Sample ID":"S00020468",
"Factors":{"GENDER":"female","Sample type":"Cecum"}
},
{
"Subject ID":"SU0013559",
"Sample ID":"S00020469",
"Factors":{"GENDER":"female","Sample type":"Colon"}
},
{
"Subject ID":"SU0013563",
"Sample ID":"S00020470",
"Factors":{"GENDER":"female","Sample type":"Serum"}
},
{
"Subject ID":"SU0013563",
"Sample ID":"S00020471",
"Factors":{"GENDER":"female","Sample type":"Ileum"}
},
{
"Subject ID":"SU0013563",
"Sample ID":"S00020472",
"Factors":{"GENDER":"female","Sample type":"Cecum"}
},
{
"Subject ID":"SU0013563",
"Sample ID":"S00020473",
"Factors":{"GENDER":"female","Sample type":"Colon"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A014_BileAcids.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Waters Xbridge BEH C18 (150 x 2.1mm, 3.5um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A014_BileAcids.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6490A QQQ","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"ug/100 mg",

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}