{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000838","ANALYSIS_ID":"AN001343","VERSION":"1","CREATED_ON":"August 9, 2017, 10:02 am"},

"PROJECT":{"PROJECT_TITLE":"Obesity and marrow and MAT metabolomics Studies","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"MAT and bone marrow collected to evaluate lipid content/lipid type. In addition, marrow evaluations for glycolysis/TCA cycle and acylcarnitines will be performed.","INSTITUTE":"University of Michigan","DEPARTMENT":"Pedatric Endocrinology","LABORATORY":"Singer Lab","LAST_NAME":"Singer","FIRST_NAME":"Kanakadurga","ADDRESS":"Ann Arbor, MI","EMAIL":"ksinger@umich.edu","PHONE":"734-764-5175"},

"STUDY":{"STUDY_TITLE":"Obesity and marrow and marrow adipose tissue (MAT) metabolomics","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Male C57Bl6j mice were fed HFD for 16-20 weeks and marrow adipose tissue (MAT) and bone marrow collected to evaluate lipid content/lipid type. In addition, marrow evaluations for glycolysis/TCA cycle and acylcarnitines will be performed.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"4","TOTAL_SUBJECTS":"6"},

"SUBJECT":{"SUBJECT_TYPE":"MOUSE","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0018085",
"Sample ID":"S00028167",
"Factors":{"Diet":"ND","Sample type":"Adipose Tissue"}
},
{
"Subject ID":"SU0018086",
"Sample ID":"S00028168",
"Factors":{"Diet":"ND","Sample type":"Adipose Tissue"}
},
{
"Subject ID":"SU0018087",
"Sample ID":"S00028169",
"Factors":{"Diet":"ND","Sample type":"Adipose Tissue"}
},
{
"Subject ID":"SU0018088",
"Sample ID":"S00028170",
"Factors":{"Diet":"HFD","Sample type":"Adipose Tissue"}
},
{
"Subject ID":"SU0018089",
"Sample ID":"S00028171",
"Factors":{"Diet":"HFD","Sample type":"Adipose Tissue"}
},
{
"Subject ID":"SU0018090",
"Sample ID":"S00028172",
"Factors":{"Diet":"HFD","Sample type":"Adipose Tissue"}
},
{
"Subject ID":"SU0018085",
"Sample ID":"S00028173",
"Factors":{"Diet":"ND","Sample type":"Bone Marrow"}
},
{
"Subject ID":"SU0018086",
"Sample ID":"S00028174",
"Factors":{"Diet":"ND","Sample type":"Bone Marrow"}
},
{
"Subject ID":"SU0018087",
"Sample ID":"S00028175",
"Factors":{"Diet":"ND","Sample type":"Bone Marrow"}
},
{
"Subject ID":"SU0018088",
"Sample ID":"S00028176",
"Factors":{"Diet":"HFD","Sample type":"Bone Marrow"}
},
{
"Subject ID":"SU0018089",
"Sample ID":"S00028177",
"Factors":{"Diet":"HFD","Sample type":"Bone Marrow"}
},
{
"Subject ID":"SU0018090",
"Sample ID":"S00028178",
"Factors":{"Diet":"HFD","Sample type":"Bone Marrow"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A008_Acyl_Carnitines.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"HILIC","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Phenomenex Luna NH2 (150 x 1mm, 3um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A011 - Glycolysis-TCA-nucleotides.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6520B QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"pmol/mg",

"Data":[{"Metabolite":"D-ERYTHROSE 4-PHOSPHATE","S00028173":"11.21723691","S00028174":"9.525160339","S00028175":"10.81684136","S00028176":"8.269531081","S00028177":"8.151496331","S00028178":"10.22268419"},{"Metabolite":"BETA-NAD+","S00028173":".788106171","S00028174":"1.207061422","S00028175":"1.468657745","S00028176":"1.076459844","S00028177":"1.419506204","S00028178":"1.052288221"},{"Metabolite":"COENZYME II","S00028173":".017117051","S00028174":".11518378","S00028175":"","S00028176":".041070733","S00028177":".094748594","S00028178":".035607993"},{"Metabolite":"SEDOHEPTULOSE 7-PHOSPHATE","S00028173":".971134884","S00028174":".840626295","S00028175":"1.05661219","S00028176":"1.009608077","S00028177":"1.137475325","S00028178":"1.282093561"},{"Metabolite":"D-FRUCTOSE, 1,6-BIS(DIHYDROGEN PHOSPHATE)","S00028173":".630753035","S00028174":".596264445","S00028175":".703219495","S00028176":".641354059","S00028177":"1.00400696","S00028178":"1.00731512"},{"Metabolite":"CITRIC ACID","S00028173":"5.651720426","S00028174":"6.966896298","S00028175":"1.124487197","S00028176":"7.918843951","S00028177":"15.89988046","S00028178":"12.73387098"},{"Metabolite":"NADH","S00028173":"1.504960037","S00028174":"1.498680917","S00028175":"2.991418756","S00028176":"3.022317975","S00028177":"2.951316153","S00028178":"2.606690303"},{"Metabolite":"FAD","S00028173":".621885165","S00028174":".621454168","S00028175":".739493275","S00028176":".698121132","S00028177":".562010923","S00028178":".591030929"},{"Metabolite":"MALIC ACID","S00028173":"37.45169615","S00028174":"40.77990219","S00028175":"49.12109287","S00028176":"46.45408942","S00028177":"43.99050055","S00028178":"45.82820688"},{"Metabolite":"ADENOSINE TRIPHOSPHATE","S00028173":".289752498","S00028174":".247268357","S00028175":".233750701","S00028176":".241138066","S00028177":".65733375","S00028178":".746327059"},{"Metabolite":"ROBISON ESTER","S00028173":"11.18826166","S00028174":"8.340274486","S00028175":"10.36384947","S00028176":"7.181603963","S00028177":"7.25749618","S00028178":"8.655829603"},{"Metabolite":"SUCROSE","S00028173":"4.483223877","S00028174":"7.537540425","S00028175":"12.23803578","S00028176":"7.935353572","S00028177":"13.41960018","S00028178":"9.935247418"},{"Metabolite":"ADENOSINE 5'-DIPHOSPHATE","S00028173":"1.758209907","S00028174":".955810075","S00028175":"1.981040265","S00028176":"3.185868953","S00028177":"4.764500714","S00028178":"4.284073747"},{"Metabolite":"ADENOSINE 5'-MONOPHOSPHATE","S00028173":"35.31938586","S00028174":"42.85794676","S00028175":"52.68821956","S00028176":"51.49928332","S00028177":"52.35454546","S00028178":"55.88417157"},{"Metabolite":"GLYCERATE 3-PHOSPHATE","S00028173":"3.083440903","S00028174":"3.131922324","S00028175":"1.420333692","S00028176":"3.458399698","S00028177":"3.790107816","S00028178":"3.186606599"},{"Metabolite":"RIBOSE PHOSPHATE","S00028173":"5.616352061","S00028174":"5.112114499","S00028175":"7.189463303","S00028176":"7.980978684","S00028177":"7.455770943","S00028178":"8.366128738"},{"Metabolite":"6-PHOSPHOGLUCONIC ACID","S00028173":".744591739","S00028174":".73717619","S00028175":".766298984","S00028176":".549127899","S00028177":".557499085","S00028178":".654940072"},{"Metabolite":"ACETOACETYL-COA","S00028173":".0733146","S00028174":".088486978","S00028175":".09308221","S00028176":".151107766","S00028177":".142492041","S00028178":".18864003"}],

"Metabolites":[{"Metabolite":"D-ERYTHROSE 4-PHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"122357","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"BETA-NAD+","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"15938971","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"COENZYME II","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"15938972","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"SEDOHEPTULOSE 7-PHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"165007","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"D-FRUCTOSE, 1,6-BIS(DIHYDROGEN PHOSPHATE)","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"21125049","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"CITRIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"311","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"NADH","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"439153","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"FAD","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"46906035","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"MALIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"525","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ADENOSINE TRIPHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5957","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ROBISON ESTER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5958","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"SUCROSE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5988","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ADENOSINE 5'-DIPHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6022","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ADENOSINE 5'-MONOPHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6083","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"GLYCERATE 3-PHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"724","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"RIBOSE PHOSPHATE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"77982","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"6-PHOSPHOGLUCONIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"91493","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ACETOACETYL-COA","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"92153","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}