{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001157","ANALYSIS_ID":"AN001915","VERSION":"1","CREATED_ON":"March 27, 2019, 7:40 am"},

"PROJECT":{"PROJECT_TITLE":"The gut microbiota plays a central role to modulate the plasma metabolome in response to chronic Angiotensin II infusion","PROJECT_SUMMARY":"Six week old C57BL/6 conventional (mice with gut microbiota; conv, n=6) and germ-free (mice without gut microbiota; GF, n=6) mice were infused with angiotensin-II (AngII) for 4 weeks (400ng.kg-1.min-1; Alzet 1004). In parallel control groups, conv (n=6) and GF (n=6) mice received saline via minipumps. Our primary goal was to identify metabolites which were differentially regulated in conventional mice treated with AngII, but not in GF mice, indicating that these metabolites are microbial in origin. Following minipump implantation, animals were housed singly to prevent cross-contamination of microbiota. At the end of fourth week, feces and blood were collected. Both plasma and feces samples were processed and analyzed by using Liquid Chromatography-Tandem Mass Spectroscopy (LC-MS/MS) for metabolite detection (Metabolon).","INSTITUTE":"Johns Hopkins University School of Medicine","LAST_NAME":"Pluznick","FIRST_NAME":"Jennifer","ADDRESS":"725 N. Wolfe St., WBSB 205, Baltimore, MD 21205","EMAIL":"jpluznick@jhmi.edu","PHONE":"410 614 4660"},

"STUDY":{"STUDY_TITLE":"The gut microbiota plays a central role to modulate the plasma metabolome in response to chronic Angiotensin II infusion (part-I)","STUDY_SUMMARY":"Six week old C57BL/6 conventional (mice with gut microbiota; conv, n=6) and germ-free (mice without gut microbiota; GF, n=6) mice were infused with angiotensin-II (AngII) for 4 weeks (400ng.kg-1.min-1; Alzet 1004). In parallel control groups, conv (n=6) and GF (n=6) mice received saline via minipumps. Our primary goal was to identify metabolites which were differentially regulated in conventional mice treated with AngII, but not in GF mice, indicating that these metabolites are microbial in origin. Following minipump implantation, animals were housed singly to prevent cross-contamination of microbiota. At the end of fourth week, feces and blood were collected. Both plasma and feces samples were processed and analyzed by using Liquid Chromatography-Tandem Mass Spectroscopy (LC-MS/MS) for metabolite detection (Metabolon).","INSTITUTE":"Johns Hopkins University School of Medicine","LAST_NAME":"Pluznick","FIRST_NAME":"Jennifer","ADDRESS":"725 N. Wolfe St., WBSB 205, Baltimore, MD 21205","EMAIL":"jpluznick@jhmi.edu","PHONE":"410 614 4660"},

"SUBJECT":{"SUBJECT_TYPE":"Mammal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENDER":"Male and female"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"Female",
"Sample ID":"JHOP-05697",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05698",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05699",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05700",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05701",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05702",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05703",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05704",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05705",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05706",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05707",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05708",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05709",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05710",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05711",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05712",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05713",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05714",
"Factors":{"Sample":"Plasma","TREATMENT":"Saline"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05715",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05716",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Female",
"Sample ID":"JHOP-05717",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05718",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05719",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
},
{
"Subject ID":"Male",
"Sample ID":"JHOP-05720",
"Factors":{"Sample":"Plasma","TREATMENT":"Angiotensin II"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Plasma","SAMPLE_TYPE":"Blood (serum)"},

"TREATMENT":{"TREATMENT_SUMMARY":"Six week old C57BL/6 conventional (mice with gut microbiota; conv, n=6) and germ-free (mice without gut microbiota; GF, n=6) mice were infused with angiotensin-II (AngII) for 4 weeks (400ng.kg-1.min-1; Alzet 1004). In parallel control groups, conv (n=6) and GF (n=6) mice received saline via minipumps."},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Samples were prepared using the automated MicroLab STAR® system from Hamilton Company. Several recovery standards were added prior to the first step in the extraction process for QC purposes. To remove protein, dissociate small molecules bound to protein or trapped in the precipitated protein matrix, and to recover chemically diverse metabolites, proteins were precipitated with methanol under vigorous shaking for 2 min (Glen Mills GenoGrinder 2000) followed by centrifugation. The resulting extract was divided into five fractions: two for analysis by two separate reverse phase (RP)/UPLC-MS/MS methods with positive ion mode electrospray ionization (ESI), one for analysis by RP/UPLC-MS/MS with negative ion mode ESI, one for analysis by HILIC/UPLC-MS/MS with negative ion mode ESI, and one sample was reserved for backup. Samples were placed briefly on a TurboVap® (Zymark) to remove the organic solvent. The sample extracts were stored overnight under nitrogen before preparation for analysis."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Waters Acquity","COLUMN_NAME":"Waters Acquity CSH C18 (100 x 2.1mm, 1.7um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"None"},

"MS_METABOLITE_DATA":{
"Units":"Peaks area",

"Data":[{"Metabolite":"(12 or 13)-methylmyristate (a15:0 or i15:0)","JHOP-05697":"1.0668","JHOP-05698":"1.9067","JHOP-05699":"1.0828","JHOP-05700":"0.5658","JHOP-05701":"1.1731","JHOP-05702":"0.6526","JHOP-05703":"1.149","JHOP-05704":"0.8797","JHOP-05705":"1.0689","JHOP-05706":"1.6314","JHOP-05707":"0.6633","JHOP-05708":"0.8398","JHOP-05709":"1.1936","JHOP-05710":"0.6724","JHOP-05711":"1","JHOP-05712":"0.9662","JHOP-05713":"1.0167","JHOP-05714":"1.257","JHOP-05715":"1.2396","JHOP-05716":"0.7121","JHOP-05717":"0.5658","JHOP-05718":"0.9131","JHOP-05719":"0.9626","JHOP-05720":"0.9"},{"Metabolite":"(14 or 15)-methylpalmitate (a17:0 or i17:0)","JHOP-05697":"1.0245","JHOP-05698":"1.6017","JHOP-05699":"0.9755","JHOP-05700":"0.6014","JHOP-05701":"1.0818","JHOP-05702":"0.7525","JHOP-05703":"1.0697","JHOP-05704":"0.8689","JHOP-05705":"1.1792","JHOP-05706":"1.3915","JHOP-05707":"0.7756","JHOP-05708":"0.7187","JHOP-05709":"1.1451","JHOP-05710":"0.7489","JHOP-05711":"1.0412","JHOP-05712":"1.0939","JHOP-05713":"1.0266","JHOP-05714":"1.2589","JHOP-05715":"1.4387","JHOP-05716":"0.914","JHOP-05717":"0.9419","JHOP-05718":"0.7927","JHOP-05719":"0.9182","JHOP-05720":"0.9066"},{"Metabolite":"(16 or 17)-methylstearate (a19:0 or i19:0)","JHOP-05697":"0.5947","JHOP-05698":"1.2293","JHOP-05699":"1.1898","JHOP-05700":"0.4389","JHOP-05701":"1.5132","JHOP-05702":"0.6205","JHOP-05703":"0.9896","JHOP-05704":"1.222","JHOP-05705":"0.9976","JHOP-05706":"2.3142","JHOP-05707":"0.4715","JHOP-05708":"0.5225","JHOP-05709":"0.7455","JHOP-05710":"0.7705","JHOP-05711":"1.4227","JHOP-05712":"1.7358","JHOP-05713":"1.546","JHOP-05714":"1.0024","JHOP-05715":"1.4342","JHOP-05716":"1.0267","JHOP-05717":"0.6623","JHOP-05718":"0.7876","JHOP-05719":"0.7886","JHOP-05720":"1.3758"},{"Metabolite":"(N(1) + N(8))-acetylspermidine","JHOP-05697":"0.6994","JHOP-05698":"0.474","JHOP-05699":"0.3408","JHOP-05700":"0.5489","JHOP-05701":"1.5533","JHOP-05702":"1.3824","JHOP-05703":"1.0363","JHOP-05704":"1.0653","JHOP-05705":"0.9637","JHOP-05706":"1.6295","JHOP-05707":"1.3869","JHOP-05708":"0.2821","JHOP-05709":"0.7887","JHOP-05710":"0.7442","JHOP-05711":"0.616","JHOP-05712":"0.8523","JHOP-05713":"1.0593","JHOP-05714":"1.3281","JHOP-05715":"1.1328","JHOP-05716":"1.0538","JHOP-05717":"0.7693","JHOP-05718":"1.0556","JHOP-05719":"1.1872","JHOP-05720":"0.916"},{"Metabolite":"1-(1-enyl-oleoyl)-GPE (P-18:1)","JHOP-05697":"1.1051","JHOP-05698":"1.2113","JHOP-05699":"1.0238","JHOP-05700":"0.7441","JHOP-05701":"2.3487","JHOP-05702":"1.1883","JHOP-05703":"0.955","JHOP-05704":"1.6043","JHOP-05705":"1.3791","JHOP-05706":"0.9989","JHOP-05707":"1.0064","JHOP-05708":"1.3597","JHOP-05709":"1.1863","JHOP-05710":"1.0011","JHOP-05711":"0.8094","JHOP-05712":"0.6287","JHOP-05713":"1.0216","JHOP-05714":"0.9021","JHOP-05715":"0.4861","JHOP-05716":"0.5749","JHOP-05717":"0.5124","JHOP-05718":"0.9525","JHOP-05719":"0.8097","JHOP-05720":"0.9022"},{"Metabolite":"1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)","JHOP-05697":"0.6755","JHOP-05698":"1.1103","JHOP-05699":"0.8574","JHOP-05700":"0.6809","JHOP-05701":"0.9781","JHOP-05702":"0.8126","JHOP-05703":"1.0077","JHOP-05704":"1.1476","JHOP-05705":"1.0064","JHOP-05706":"0.8622","JHOP-05707":"0.6709","JHOP-05708":"1.0649","JHOP-05709":"1.2013","JHOP-05710":"1.3225","JHOP-05711":"1.1622","JHOP-05712":"0.9936","JHOP-05713":"1.3034","JHOP-05714":"1.6409","JHOP-05715":"0.9407","JHOP-05716":"0.8719","JHOP-05717":"0.8654","JHOP-05718":"0.8818","JHOP-05719":"1.1616","JHOP-05720":"1.4472"},{"Metabolite":"1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2)","JHOP-05697":"0.78","JHOP-05698":"1.2919","JHOP-05699":"0.9209","JHOP-05700":"0.9266","JHOP-05701":"1.0795","JHOP-05702":"1.0099","JHOP-05703":"1.1246","JHOP-05704":"0.9855","JHOP-05705":"1.0321","JHOP-05706":"0.805","JHOP-05707":"0.8678","JHOP-05708":"0.872","JHOP-05709":"1.3357","JHOP-05710":"1.205","JHOP-05711":"1.058","JHOP-05712":"0.9224","JHOP-05713":"0.9901","JHOP-05714":"1.0612","JHOP-05715":"0.6828","JHOP-05716":"0.636","JHOP-05717":"0.7889","JHOP-05718":"1.4451","JHOP-05719":"1.0614","JHOP-05720":"1.2736"},{"Metabolite":"1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)","JHOP-05697":"0.5275","JHOP-05698":"1.2957","JHOP-05699":"1.149","JHOP-05700":"1.0116","JHOP-05701":"1.277","JHOP-05702":"0.9884","JHOP-05703":"1.0673","JHOP-05704":"1.3397","JHOP-05705":"0.9657","JHOP-05706":"0.863","JHOP-05707":"0.6287","JHOP-05708":"0.6707","JHOP-05709":"1.1529","JHOP-05710":"1.1183","JHOP-05711":"0.9688","JHOP-05712":"0.9457","JHOP-05713":"1.1857","JHOP-05714":"1.3142","JHOP-05715":"0.62","JHOP-05716":"0.5385","JHOP-05717":"0.7493","JHOP-05718":"1.2215","JHOP-05719":"0.7358","JHOP-05720":"1.3469"},{"Metabolite":"1-(1-enyl-palmitoyl)-2-oleoyl-GPC (P-16:0/18:1)","JHOP-05697":"0.7378","JHOP-05698":"0.9514","JHOP-05699":"1.1332","JHOP-05700":"0.8004","JHOP-05701":"0.9981","JHOP-05702":"0.9242","JHOP-05703":"1.4466","JHOP-05704":"1.3965","JHOP-05705":"1.215","JHOP-05706":"1.3007","JHOP-05707":"1.0112","JHOP-05708":"1.0019","JHOP-05709":"0.9125","JHOP-05710":"1.0913","JHOP-05711":"1.2686","JHOP-05712":"1.1425","JHOP-05713":"1.2022","JHOP-05714":"1.2432","JHOP-05715":"0.6861","JHOP-05716":"0.7252","JHOP-05717":"0.8411","JHOP-05718":"0.885","JHOP-05719":"0.9582","JHOP-05720":"0.9638"},{"Metabolite":"1-(1-enyl-palmitoyl)-2-oleoyl-GPE (P-16:0/18:1)","JHOP-05697":"0.8095","JHOP-05698":"1.9807","JHOP-05699":"0.9628","JHOP-05700":"1.0192","JHOP-05701":"1.7255","JHOP-05702":"1.3623","JHOP-05703":"1.4445","JHOP-05704":"1.8275","JHOP-05705":"1.7067","JHOP-05706":"0.9799","JHOP-05707":"1.0655","JHOP-05708":"1.4466","JHOP-05709":"0.9017","JHOP-05710":"1.0778","JHOP-05711":"0.9631","JHOP-05712":"0.7603","JHOP-05713":"1.2631","JHOP-05714":"1.3022","JHOP-05715":"0.632","JHOP-05716":"0.5982","JHOP-05717":"0.5434","JHOP-05718":"0.9808","JHOP-05719":"0.8421","JHOP-05720":"0.9063"},{"Metabolite":"1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)","JHOP-05697":"0.7513","JHOP-05698":"0.9469","JHOP-05699":"1.0377","JHOP-05700":"0.7572","JHOP-05701":"0.9243","JHOP-05702":"1.0448","JHOP-05703":"1.222","JHOP-05704":"1.2961","JHOP-05705":"1.1132","JHOP-05706":"1.2352","JHOP-05707":"0.9775","JHOP-05708":"1.0505","JHOP-05709":"0.9339","JHOP-05710":"1.0108","JHOP-05711":"1.2171","JHOP-05712":"1.0836","JHOP-05713":"1.1082","JHOP-05714":"1.1896","JHOP-05715":"0.6493","JHOP-05716":"0.6611","JHOP-05717":"0.774","JHOP-05718":"0.9195","JHOP-05719":"0.9892","JHOP-05720":"0.9374"},{"Metabolite":"1-(1-enyl-palmitoyl)-GPC (P-16:0)","JHOP-05697":"0.9713","JHOP-05698":"1.0169","JHOP-05699":"0.8107","JHOP-05700":"0.4278","JHOP-05701":"1.486","JHOP-05702":"1.2963","JHOP-05703":"1.5647","JHOP-05704":"1.3672","JHOP-05705":"1.3205","JHOP-05706":"1.0004","JHOP-05707":"1.1992","JHOP-05708":"0.8389","JHOP-05709":"0.8376","JHOP-05710":"0.8283","JHOP-05711":"1.0288","JHOP-05712":"0.9063","JHOP-05713":"0.7115","JHOP-05714":"1.061","JHOP-05715":"0.6953","JHOP-05716":"0.6736","JHOP-05717":"0.9215","JHOP-05718":"1.2532","JHOP-05719":"0.9996","JHOP-05720":"1.0457"},{"Metabolite":"1-(1-enyl-palmitoyl)-GPE (P-16:0)","JHOP-05697":"0.7497","JHOP-05698":"0.943","JHOP-05699":"1.0017","JHOP-05700":"0.509","JHOP-05701":"1.6847","JHOP-05702":"1.1791","JHOP-05703":"1.0501","JHOP-05704":"1.1971","JHOP-05705":"1.1419","JHOP-05706":"0.9592","JHOP-05707":"1.045","JHOP-05708":"0.9295","JHOP-05709":"1.3884","JHOP-05710":"1.083","JHOP-05711":"0.8674","JHOP-05712":"0.6958","JHOP-05713":"0.9983","JHOP-05714":"1.1091","JHOP-05715":"0.773","JHOP-05716":"0.6473","JHOP-05717":"0.8319","JHOP-05718":"1.2756","JHOP-05719":"0.9691","JHOP-05720":"1.0262"},{"Metabolite":"1-(1-enyl-stearoyl)-2-arachidonoyl-GPE (P-18:0/20:4)","JHOP-05697":"0.7724","JHOP-05698":"1.0201","JHOP-05699":"0.7348","JHOP-05700":"0.4826","JHOP-05701":"1.0863","JHOP-05702":"1.1149","JHOP-05703":"1.2323","JHOP-05704":"1.0279","JHOP-05705":"0.9512","JHOP-05706":"0.8408","JHOP-05707":"0.9134","JHOP-05708":"0.9412","JHOP-05709":"1.4715","JHOP-05710":"1.5394","JHOP-05711":"1.2612","JHOP-05712":"0.9799","JHOP-05713":"1.197","JHOP-05714":"1.2854","JHOP-05715":"0.8895","JHOP-05716":"0.8979","JHOP-05717":"0.9098","JHOP-05718":"0.8451","JHOP-05719":"1.1118","JHOP-05720":"1.3595"},{"Metabolite":"1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)","JHOP-05697":"0.7361","JHOP-05698":"1.3519","JHOP-05699":"0.7232","JHOP-05700":"0.6091","JHOP-05701":"1.3322","JHOP-05702":"1.0281","JHOP-05703":"1.0339","JHOP-05704":"1.1993","JHOP-05705":"1.2843","JHOP-05706":"0.8567","JHOP-05707":"0.8029","JHOP-05708":"0.7343","JHOP-05709":"1.1484","JHOP-05710":"1.1415","JHOP-05711":"0.9935","JHOP-05712":"0.8502","JHOP-05713":"0.9141","JHOP-05714":"1.0075","JHOP-05715":"0.7929","JHOP-05716":"0.5738","JHOP-05717":"0.6391","JHOP-05718":"1.0538","JHOP-05719":"1.0065","JHOP-05720":"1.118"},{"Metabolite":"1-(1-enyl-stearoyl)-2-oleoyl-GPE (P-18:0/18:1)","JHOP-05697":"0.8328","JHOP-05698":"1.5723","JHOP-05699":"0.7969","JHOP-05700":"0.5347","JHOP-05701":"1.6147","JHOP-05702":"0.9691","JHOP-05703":"1.1238","JHOP-05704":"1.9089","JHOP-05705":"1.4342","JHOP-05706":"1.2107","JHOP-05707":"0.9756","JHOP-05708":"0.9459","JHOP-05709":"1.0169","JHOP-05710":"1.4254","JHOP-05711":"1.2191","JHOP-05712":"0.8543","JHOP-05713":"1.3106","JHOP-05714":"0.922","JHOP-05715":"0.9831","JHOP-05716":"0.6892","JHOP-05717":"0.6756","JHOP-05718":"1.1507","JHOP-05719":"0.7081","JHOP-05720":"1.4747"},{"Metabolite":"1-(1-enyl-stearoyl)-GPE 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}

}