{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001163","ANALYSIS_ID":"AN001924","VERSION":"1","CREATED_ON":"April 2, 2019, 5:57 pm"},

"PROJECT":{"PROJECT_TITLE":"Variability in metabolomic profiles among unique genotypes of Acropora cervicornis","PROJECT_SUMMARY":"This project aims to identify differences in metabolomic profiles among known, unique genotypes of the threatened staghorn coral Acropora cervicornis. Previous studies have shown that the three genotypes selected for study possess unique phenotypes related to growth and thermotolerance. Improved understanding of metabolomic differences could aid in selection of A. cervicornis genotypes for use in restoration.","INSTITUTE":"University of Florida","LAST_NAME":"Patterson","FIRST_NAME":"Joshua","ADDRESS":"Florida Aquarium Center for Conservation, 529 Estuary Shore Lane, Apollo Beach, FL 33572","EMAIL":"joshpatterson@ufl.edu","PHONE":"813-419-4917"},

"STUDY":{"STUDY_TITLE":"Variability in metabolomic profiles among unique genotypes of Acropora cervicornis (part-II)","STUDY_SUMMARY":"We hypothesized that each of the three genotypes tested would have unique metabolomic profiles. These data increase our basic knowledge of the coral metabolome and represent an important step toward linking genotype, phenotype, and metabolome in reef-building corals.","INSTITUTE":"University of Florida","DEPARTMENT":"Florida Aquarium Center for Conservation","LAST_NAME":"Patterson","FIRST_NAME":"Joshua","ADDRESS":"529 Estuary Shore Lane, Apollo Beach, FL 33572","EMAIL":"joshpatterson@ufl.edu","PHONE":"813-419-4917","NUM_GROUPS":"3","TOTAL_SUBJECTS":"16"},

"SUBJECT":{"SUBJECT_TYPE":"Other","SUBJECT_SPECIES":"Acropora cervicornis","TAXONOMY_ID":"6130","GENOTYPE_STRAIN":"U25, U41, U44"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"U25_A_1b",
"Factors":{"Genotype":"U25"}
},
{
"Subject ID":"-",
"Sample ID":"U25_A_2b",
"Factors":{"Genotype":"U25"}
},
{
"Subject ID":"-",
"Sample ID":"U25_A_3b",
"Factors":{"Genotype":"U25"}
},
{
"Subject ID":"-",
"Sample ID":"U25_B_1b",
"Factors":{"Genotype":"U25"}
},
{
"Subject ID":"-",
"Sample ID":"U25_B_2b",
"Factors":{"Genotype":"U25"}
},
{
"Subject ID":"-",
"Sample ID":"U41_A_1b",
"Factors":{"Genotype":"U41"}
},
{
"Subject ID":"-",
"Sample ID":"U41_A_2b",
"Factors":{"Genotype":"U41"}
},
{
"Subject ID":"-",
"Sample ID":"U41_A_3b",
"Factors":{"Genotype":"U41"}
},
{
"Subject ID":"-",
"Sample ID":"U41_A_4b",
"Factors":{"Genotype":"U41"}
},
{
"Subject ID":"-",
"Sample ID":"U41_B_1b",
"Factors":{"Genotype":"U41"}
},
{
"Subject ID":"-",
"Sample ID":"U41_B_2b",
"Factors":{"Genotype":"U41"}
},
{
"Subject ID":"-",
"Sample ID":"U44_A_1b",
"Factors":{"Genotype":"U44"}
},
{
"Subject ID":"-",
"Sample ID":"U44_A_2b",
"Factors":{"Genotype":"U44"}
},
{
"Subject ID":"-",
"Sample ID":"U44_A_3b",
"Factors":{"Genotype":"U44"}
},
{
"Subject ID":"-",
"Sample ID":"U44_B_1b",
"Factors":{"Genotype":"U44"}
},
{
"Subject ID":"-",
"Sample ID":"U44_B_2b",
"Factors":{"Genotype":"U44"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Coral colonies were brought to the surface intact, and ~3 cm nubbins were clipped from actively growing branch tips. Nubbins were placed in 20 mL scintillation vials containing 10 mL of 100% methanol spiked with a 0.005 mM aminoanthracene standard and immedately placed on ice. Samples were stored in a -20°C freezer overnight, then transported back to the laboratory n ice and again stored in a 20°C freezer overnight prior to extraction. The next day, samples were agitated for 5 minutes, then allowed to settle for one hour in the -20°C freezer. One mL of the sample extract was transferred to clean 1.5 mL microcentrifuge tubes and centrifuged at 20,000 g for 5 minutes. The supernatant was then transferred to a new 1.5 mL microcentrifuge tube and stored in a -80°C freezer until processing.","SAMPLE_TYPE":"Tissue and skeleton"},

"TREATMENT":{"TREATMENT_SUMMARY":"No treatment was applied; study was conducted on natural metabolomic variation among genotypes"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Corol holobiont extract (in methonol) was added to double distilled water (1:2 v/v of sample to water), then flash freeze lyophilized (Labconco) until dry. Lyophilized dry powder was re-suspended in phosphate buffer in deuterium oxide at pH 7. The final volume for the 1H-NMR samples was 60 μL (in a 1.5 mm O.D. tube) with 90 % (v/v) of deuterated 50 mM sodium phosphate buffer (pH 7) with 2 mM of ethylene diamine tetra-acetic acid (EDTA). The remaining 10 % (v/v) was occupied by an internal standard [5 mM D6-4,4-dimethyl-4-silapentane-1-sulfonic acid (DSS-D6) and 0.2% sodium azide in deuterated environment; Chenomx, Inc.].","PROCESSING_METHOD":"Lyophilization","PROCESSING_STORAGE_CONDITIONS":"-80℃","EXTRACT_STORAGE":"-80℃"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Dionex Ultimate 3000","COLUMN_NAME":"ACE Excel 2 C18-PFP (100 x 2.1mm, 2um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"Metaboanalyst for data processing","MS_RESULTS_FILE":"ST001163_AN001924_Results.txt UNITS:Peak Height Has m/z:No Has RT:No RT units:No RT data"},

"MS_METABOLITE_DATA":{
"Units":"Peak height",

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