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"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST002000","ANALYSIS_ID":"AN003263","VERSION":"1","CREATED_ON":"November 23, 2021, 1:05 pm"},

"PROJECT":{"PROJECT_TITLE":"Case-control study on plasma metabolomics analysis in Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)","PROJECT_SUMMARY":"Targeted and untargeted metabolomics analysis consisting of 888 metabolic analytes covering primary metabolites, biogenic amines, complex lipids, and oxylipins in 106 ME/CFS cases and 91 frequency-matched healthy controls.","INSTITUTE":"Columbia University","DEPARTMENT":"Center for Infection and Immunity","LAST_NAME":"Lipkin","FIRST_NAME":"W. Ian","ADDRESS":"722 W. 168th St., 17th Floor, New York, NY, 10032","EMAIL":"wil2001@cumc.columbia.edu","PHONE":"212-342-9033","FUNDING_SOURCE":"This study was funded by National Institutes of Health U54 AI138370 (Center for Solutions for ME/CFS)"},

"STUDY":{"STUDY_TITLE":"A case-control study on plasma metabolomics analysis in Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) (Part 1)","STUDY_SUMMARY":"Targeted and untargeted metabolomics analysis consisting of 888 metabolic analytes covering primary metabolites, biogenic amines, complex lipids, and oxylipins in 106 ME/CFS cases and 91 frequency-matched healthy controls.","INSTITUTE":"Columbia University","DEPARTMENT":"Center for Infection and Immunity","LABORATORY":"Center for Infection and Immunity","LAST_NAME":"Lipkin","FIRST_NAME":"W. Ian","ADDRESS":"722 W. 168th St., 17th Floor, New York, NY, 10032","EMAIL":"wil2001@cumc.columbia.edu","PHONE":"212-342-9033"},

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"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa07_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF036_128",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa08_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF040_129",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa09_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF041_130",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa10_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF043_131",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa11_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF045_132",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa12_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF048_133",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa13_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF051_134",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa14_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF052_135",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa15_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF053_136",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa16_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF056_137",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa17_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF057_138",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa18_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF059_139",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa19_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF060_140",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa20_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"EF061_141",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa21_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH002-2_142",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa22_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH004_143",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa23_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH006_144",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa24_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH007_145",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa25_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH008_146",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa26_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH009_147",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa27_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH011_148",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa28_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH013_149",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa29_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH015_150",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa30_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH016_151",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa31_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH017_152",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa32_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH019_153",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa33_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH021_154",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa34_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH022_155",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa35_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH024_156",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa36_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH025_157",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa37_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH026_158",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa38_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH027_159",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa39_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH030_160",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa40_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH037_161",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa41_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH038_162",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa42_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH039_163",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa43_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH040_164",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa44_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH041_165",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa45_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH042_166",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa46_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH046_167",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa47_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH049_168",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa48_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH050_169",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa49_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH053_170",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181017dDTsa50_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH054_171",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa01_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH057_172",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa02_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH058_173",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa03_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH060_174",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa04_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH061_175",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa05_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH062_176",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa06_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"GH063_177",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa07_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ001_178",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa08_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ002_179",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa09_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ003_180",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa10_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ006_181",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa11_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ009_182",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa12_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ010_183",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa13_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ013_184",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa14_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ014_185",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa15_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ029_186",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa16_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ030_187",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa17_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ038_188",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa18_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ043_189",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa19_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ044_190",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa20_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ046_191",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa21_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ047_192",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa22_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ049_193",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa23_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ052_194",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa24_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ059_195",
"Factors":{"treatment":"case"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa25_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ061_196",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa26_1.cdf"}
},
{
"Subject ID":"-",
"Sample ID":"IJ075_197",
"Factors":{"treatment":"control"},
"Additional sample data":{"RAW_FILE_NAME":"181018dDTsa27_1.cdf"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Human plasma were collected and flash-frozen.","SAMPLE_TYPE":"Blood (plasma)"},

"TREATMENT":{"TREATMENT_SUMMARY":"blinded"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Human plasma from cases and controls were collected and flash-frozen."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"Gas Chromatography conditions: A 30 m long, 0.25 mm i.d. Rtx-5Sil MS column (0.25 μm 95% dimethyl 5% diphenyl polysiloxane film) with additional 10 m integrated guard column is used (Restek, Bellefonte PA). 99.9999% pure Helium with built-in purifier (Airgas, Radnor PA) is set at constant flow of 1 ml/min. The oven temperature is held constant at 50°C for 1 min and then ramped at 20°C/min to 330°C at which it is held constant for 5 min.","CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"Gerstel CIS4 –with dual MPS Injector/ Agilent 6890 GC- Pegasus III TOF MS","COLUMN_NAME":"Rtx-5Sil MS column"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Leco Pegasus IV TOF","INSTRUMENT_TYPE":"GC-TOF","MS_TYPE":"EI","ION_MODE":"UNSPECIFIED","MS_COMMENTS":"Mass spectrometer settings: A Leco Pegasus IV time of flight mass spectrometer is controlled by the Leco ChromaTOF software vs. 2.32 (St. Joseph, MI). The transfer line temperature between gas chromatograph and mass spectrometer is set to 280°C. Electron impact ionization at 70V is employed with an ion source temperature of 250°C. Acquisition rate is 17 spectra/second, with a scan mass range of 85-500 Da."},

"MS_METABOLITE_DATA":{
"Units":"normalized peak height",

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