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"PROJECT":{"PROJECT_TITLE":"Metabolomic analysis of maternal mid-gestation plasma and cord blood","PROJECT_SUMMARY":"Metabolomic analysis of maternal mid-gestation plasma and cord blood reveals evidence in autism spectrum disorder of inflammation, disruption of membrane integrity, and impaired neurotransmission and neurotoxicity. The discovery of prenatal and neonatal molecular biomarkers has the potential to yield insights into autism spectrum disorder (ASD) and facilitate early diagnosis. We characterized metabolomic profiles in ASD using plasma samples collected in the Norwegian Autism Birth Cohort from mothers at weeks 17-21 gestation (maternal mid-gestation, MMG, n=408) and from children on the day of birth (cord blood, CB, n=418). We analyzed associations using sex-stratified adjusted logistic regression models with Bayesian analyses. Chemical enrichment analyses (ChemRICH) were performed to determine altered chemical clusters. We also employed machine learning algorithms to assess the utility of metabolomics as ASD biomarkers. We identified ASD associations with a variety of chemical compounds including arachidonic acid, glutamate, and glutamine, and metabolite clusters including hydroxy eicospentaenoic acids, phosphatidylcholines, and ceramides in MMG and CB plasma that are consistent with inflammation, disruption of membrane integrity, and impaired neurotransmission and neurotoxicity. Girls with ASD have disruption of ether/non-ether phospholipid balance in the MMG plasma that is similar to that found in other neurodevelopmental disorders. ASD boys in the CB analyses had the highest number of dysregulated chemical clusters. Machine learning classifiers distinguished ASD cases from controls with AUC values ranging from 0.710 to 0.853. Predictive performance was better in CB analyses than in MMG. These findings may provide new insights into the sex-specific differences in ASD and have implications for discovery of biomarkers that may enable early diagnosis and intervention.","INSTITUTE":"Columbia University","DEPARTMENT":"Center for Infection and Immunity","LABORATORY":"Center for Infection and Immunity","LAST_NAME":"Lipkin","FIRST_NAME":"W. Ian","ADDRESS":"722 W. 168th St., 17th Floor, New York, NY, 10032","EMAIL":"wil2001@cumc.columbia.edu","PHONE":"(212) 342-9033","DOI":"http://dx.doi.org/10.21228/M83T4M"},

"STUDY":{"STUDY_TITLE":"Metabolomic analysis of maternal mid-gestation plasma and cord blood: primary metabolism","STUDY_SUMMARY":"Metabolomic analysis of maternal mid-gestation plasma and cord blood reveals evidence in autism spectrum disorder of inflammation, disruption of membrane integrity, and impaired neurotransmission and neurotoxicity. The discovery of prenatal and neonatal molecular biomarkers has the potential to yield insights into autism spectrum disorder (ASD) and facilitate early diagnosis. We characterized metabolomic profiles in ASD using plasma samples collected in the Norwegian Autism Birth Cohort from mothers at weeks 17-21 gestation (maternal mid-gestation, MMG, n=408) and from children on the day of birth (cord blood, CB, n=418). We analyzed associations using sex-stratified adjusted logistic regression models with Bayesian analyses. Chemical enrichment analyses (ChemRICH) were performed to determine altered chemical clusters. We also employed machine learning algorithms to assess the utility of metabolomics as ASD biomarkers. We identified ASD associations with a variety of chemical compounds including arachidonic acid, glutamate, and glutamine, and metabolite clusters including hydroxy eicospentaenoic acids, phosphatidylcholines, and ceramides in MMG and CB plasma that are consistent with inflammation, disruption of membrane integrity, and impaired neurotransmission and neurotoxicity. Girls with ASD have disruption of ether/non-ether phospholipid balance in the MMG plasma that is similar to that found in other neurodevelopmental disorders. ASD boys in the CB analyses had the highest number of dysregulated chemical clusters. Machine learning classifiers distinguished ASD cases from controls with AUC values ranging from 0.710 to 0.853. Predictive performance was better in CB analyses than in MMG. These findings may provide new insights into the sex-specific differences in ASD and have implications for discovery of biomarkers that may enable early diagnosis and intervention.","INSTITUTE":"Columbia University","LAST_NAME":"Lipkin","FIRST_NAME":"W. Ian","ADDRESS":"722 W. 168th St., 17th Floor, New York, NY, 10032","EMAIL":"wil2001@cumc.columbia.edu","PHONE":"(212) 342-9033","SUBMIT_DATE":"2023-02-21"},

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"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa49_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 23",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa50_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 24",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa01_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 25",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa02_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 26",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa03_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 27",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa04_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 28",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa05_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 29",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa06_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 3",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa30_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 30",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa07_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 31",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa08_1"}
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{
"Subject ID":"-",
"Sample ID":"pool 32",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa09_1"}
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{
"Subject ID":"-",
"Sample ID":"pool 33",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa10_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 34",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa11_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 35",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa12_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 36",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa13_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 37",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa14_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 38",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa15_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 39",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa16_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 4",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa31_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 40",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa17_1"}
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{
"Subject ID":"-",
"Sample ID":"pool 41",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa18_1"}
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{
"Subject ID":"-",
"Sample ID":"pool 42",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa19_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 43",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa20_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 44",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa21_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 45",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa22_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 46",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa23_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 47",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa24_1"}
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{
"Subject ID":"-",
"Sample ID":"pool 48",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa25_1"}
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{
"Subject ID":"-",
"Sample ID":"pool 49",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa26_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 5",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
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},
{
"Subject ID":"-",
"Sample ID":"pool 50",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa27_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 51",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa28_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 52",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa29_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 53",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa30_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 54",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa31_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 55",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa32_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 56",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa33_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 57",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa34_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 58",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa35_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 59",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa36_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 6",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa33_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 60",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa37_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 61",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa38_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 62",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa39_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 63",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa40_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 64",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa41_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 65",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa42_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 66",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa43_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 67",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa44_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 68",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa45_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 69",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa46_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 7",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa34_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 70",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa47_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 71",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa48_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 72",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa49_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 73",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190805bJWsa50_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 74",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa01_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 75",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa02_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 76",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa03_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 77",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa04_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 78",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa05_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 79",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa06_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 8",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa35_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 80",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa07_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 81",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa08_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 82",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa09_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 83",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190806bJWsa10_1"}
},
{
"Subject ID":"-",
"Sample ID":"pool 9",
"Factors":{"Sex":"N/A","Diagnosis":"N/A"},
"Additional sample data":{"RAW_FILE_NAME":"190804bJWsa36_1"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Spun inside centrifuge and processed","SAMPLE_TYPE":"Blood (plasma)"},

"TREATMENT":{"TREATMENT_SUMMARY":"NA"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"SOP blood-LCGCextract-02252019","SAMPLEPREP_PROTOCOL_FILENAME":"SOP_blood-LCGCextract-02252019.docx"},

"CHROMATOGRAPHY":{"INSTRUMENT_NAME":"Agilent 7890 GC- Pegasus IV TOF MS","COLUMN_NAME":"Restek Rtx-5Sil MS (30m x 0.25mm, 0.25um)","COLUMN_TEMPERATURE":"NA","FLOW_GRADIENT":"NA","FLOW_RATE":"1 mL/min","SOLVENT_A":"NA","SOLVENT_B":"NA","CHROMATOGRAPHY_TYPE":"GC"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Leco Pegasus IV TOF","INSTRUMENT_TYPE":"GC-TOF","MS_TYPE":"EI","MS_COMMENTS":"Mass spectrometer settings: A Leco Pegasus IV time of flight mass spectrometer is controlled by the Leco ChromaTOF software vs. 2.32 (St. Joseph, MI). The transfer line temperature between gas chromatograph and mass spectrometer is set to 280°C. Electron impact ionization at 70V is employed with an ion source temperature of 250°C. Acquisition rate is 17 spectra/second, with a scan mass range of 85-500 Da.","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
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}