#METABOLOMICS WORKBENCH ychen209_20230919_041456 DATATRACK_ID:4325 STUDY_ID:ST002927 ANALYSIS_ID:AN004801 PROJECT_ID:PR001819
VERSION             	1
CREATED_ON             	October 13, 2023, 10:36 am
#PROJECT
PR:PROJECT_TITLE                 	O-GlcNAcase activity maintains stress granules for proximity-enhanced ATP
PR:PROJECT_TITLE                 	production to ensure recovery from stress
PR:PROJECT_SUMMARY               	Accurate disassembly of stress granules (SGs) after environmental stimuli
PR:PROJECT_SUMMARY               	release is essential for cells to maintain homeostasis , which requires
PR:PROJECT_SUMMARY               	ATP-consuming processes. However, the molecular mechanism whereby regulation of
PR:PROJECT_SUMMARY               	SGs programmatically disassembly and ATP restoration remain poorly understood in
PR:PROJECT_SUMMARY               	mammalian cells. Here we found that defect of OGA in cells leads to aggregates
PR:PROJECT_SUMMARY               	formation, severe autophagy and eventually apoptosis during stress recovery.
PR:PROJECT_SUMMARY               	OGA, which localized in SGs, had no effect on SGs formation but could protect
PR:PROJECT_SUMMARY               	SGs from rapid disassembly during stress recovery stage. Then the SGs localized
PR:PROJECT_SUMMARY               	glycolysis-related enzymes were reserved and concentrated in SGs during stress
PR:PROJECT_SUMMARY               	release for ATP production in a proximity manner, which was vital to guarantee
PR:PROJECT_SUMMARY               	cells resistant to stress and survival during recovery. Finally, supplementation
PR:PROJECT_SUMMARY               	of ATP to OGA knockdown cells during stress recovery significantly rescue cell
PR:PROJECT_SUMMARY               	from aggregates, autophagy and apoptosis. Together, these results describe a
PR:PROJECT_SUMMARY               	brand new mechanism on how OGA regulates the programmed disassembly of stress
PR:PROJECT_SUMMARY               	granules and restoration of ATP to safeguard cell viability in a very precisely
PR:PROJECT_SUMMARY               	programmed process, whose rate is rigorous regulated.
PR:INSTITUTE                     	Zhejiang University
PR:DEPARTMENT                    	Life Sciences Institute
PR:LABORATORY                    	Shixian Lin
PR:LAST_NAME                     	Chen
PR:FIRST_NAME                    	Yulin
PR:ADDRESS                       	Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang province, China
PR:EMAIL                         	ychen209@qq.com
PR:PHONE                         	18868107794
#STUDY
ST:STUDY_TITLE                   	O-GlcNAcase activity maintains stress granules for proximity-enhanced ATP
ST:STUDY_TITLE                   	production to ensure recovery from stress
ST:STUDY_SUMMARY                 	Accurate disassembly of stress granules (SGs) after environmental stimuli
ST:STUDY_SUMMARY                 	release is essential for cells to maintain homeostasis , which requires
ST:STUDY_SUMMARY                 	ATP-consuming processes. However, the molecular mechanism whereby regulation of
ST:STUDY_SUMMARY                 	SGs programmatically disassembly and ATP restoration remain poorly understood in
ST:STUDY_SUMMARY                 	mammalian cells. Here we found that defect of OGA in cells leads to aggregates
ST:STUDY_SUMMARY                 	formation, severe autophagy and eventually apoptosis during stress recovery.
ST:STUDY_SUMMARY                 	OGA, which localized in SGs, had no effect on SGs formation but could protect
ST:STUDY_SUMMARY                 	SGs from rapid disassembly during stress recovery stage. Then the SGs localized
ST:STUDY_SUMMARY                 	glycolysis-related enzymes were reserved and concentrated in SGs during stress
ST:STUDY_SUMMARY                 	release for ATP production in a proximity manner, which was vital to guarantee
ST:STUDY_SUMMARY                 	cells resistant to stress and survival during recovery. Finally, supplementation
ST:STUDY_SUMMARY                 	of ATP to OGA knockdown cells during stress recovery significantly rescue cell
ST:STUDY_SUMMARY                 	from aggregates, autophagy and apoptosis. Together, these results describe a
ST:STUDY_SUMMARY                 	brand new mechanism on how OGA regulates the programmed disassembly of stress
ST:STUDY_SUMMARY                 	granules and restoration of ATP to safeguard cell viability in a very precisely
ST:STUDY_SUMMARY                 	programmed process, whose rate is rigorous regulated.
ST:INSTITUTE                     	Zhejiang University
ST:DEPARTMENT                    	Life Sciences Institute
ST:LABORATORY                    	Shixian Lin
ST:LAST_NAME                     	Chen
ST:FIRST_NAME                    	Yulin
ST:ADDRESS                       	Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang province, China
ST:EMAIL                         	ychen209@qq.com
ST:PHONE                         	18868107794
#SUBJECT
SU:SUBJECT_TYPE                  	Cultured cells
SU:SUBJECT_SPECIES               	Homo sapiens
SU:TAXONOMY_ID                   	9606
#SUBJECT_SAMPLE_FACTORS:         	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data
SUBJECT_SAMPLE_FACTORS           	-	QC-1	Factor:QC	RAW_FILE_NAME=00QC; Other=QC-1
SUBJECT_SAMPLE_FACTORS           	-	QC-2	Factor:QC	RAW_FILE_NAME=00QC; Other=QC-2
SUBJECT_SAMPLE_FACTORS           	-	QC-3	Factor:QC	RAW_FILE_NAME=00QC; Other=QC-3
SUBJECT_SAMPLE_FACTORS           	-	C1	Factor:noStressHeLa	RAW_FILE_NAME=01C1; Other=noStressHeLa-1
SUBJECT_SAMPLE_FACTORS           	-	C2	Factor:noStressHeLa	RAW_FILE_NAME=02C2; Other=noStressHeLa-2
SUBJECT_SAMPLE_FACTORS           	-	C3	Factor:noStressHeLa	RAW_FILE_NAME=03C3; Other=noStressHeLa-3
SUBJECT_SAMPLE_FACTORS           	-	C4	Factor:noStressKDOGA	RAW_FILE_NAME=04C4; Other=noStressKDOGA-1
SUBJECT_SAMPLE_FACTORS           	-	C5	Factor:noStressKDOGA	RAW_FILE_NAME=05C5; Other=noStressKDOGA-2
SUBJECT_SAMPLE_FACTORS           	-	C6	Factor:noStressKDOGA	RAW_FILE_NAME=06C6; Other=noStressKDOGA-3
SUBJECT_SAMPLE_FACTORS           	-	C7	Factor:StressHeLa	RAW_FILE_NAME=07C7; Other=StressHeLa-1
SUBJECT_SAMPLE_FACTORS           	-	C8	Factor:StressHeLa	RAW_FILE_NAME=08C8; Other=StressHeLa-2
SUBJECT_SAMPLE_FACTORS           	-	C9	Factor:StressHeLa	RAW_FILE_NAME=09C9; Other=StressHeLa-3
SUBJECT_SAMPLE_FACTORS           	-	C10	Factor:StressKDOGA	RAW_FILE_NAME=10C10; Other=StressKDOGA-1
SUBJECT_SAMPLE_FACTORS           	-	C11	Factor:StressKDOGA	RAW_FILE_NAME=11C11; Other=StressKDOGA-2
SUBJECT_SAMPLE_FACTORS           	-	C12	Factor:StressKDOGA	RAW_FILE_NAME=12C12; Other=StressKDOGA-3
SUBJECT_SAMPLE_FACTORS           	-	C13	Factor:RecoveryHeLa	RAW_FILE_NAME=13C13; Other=RecoveryHeLa-1
SUBJECT_SAMPLE_FACTORS           	-	C14	Factor:RecoveryHeLa	RAW_FILE_NAME=14C14; Other=RecoveryHeLa-2
SUBJECT_SAMPLE_FACTORS           	-	C15	Factor:RecoveryHeLa	RAW_FILE_NAME=15C15; Other=RecoveryHeLa-3
SUBJECT_SAMPLE_FACTORS           	-	C16	Factor:RecoveryKDOGA	RAW_FILE_NAME=16C16; Other=RecoveryKDOGA-1
SUBJECT_SAMPLE_FACTORS           	-	C17	Factor:RecoveryKDOGA	RAW_FILE_NAME=17C17; Other=RecoveryKDOGA-2
SUBJECT_SAMPLE_FACTORS           	-	C18	Factor:RecoveryKDOGA	RAW_FILE_NAME=18C18; Other=RecoveryKDOGA-3
#COLLECTION
CO:COLLECTION_SUMMARY            	Care was taken to quench cells quickly to minimize oxidation and degradation.
CO:SAMPLE_TYPE                   	Cultured cells
#TREATMENT
TR:TREATMENT_SUMMARY             	HeLa cells of shControl or shOGA were treated with no stress, stress by 1 M
TR:TREATMENT_SUMMARY             	sorbitol for 1 hr, or recovery from stress for 2 hr.
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY            	Briefly, equal confluency of cells in 6-well plate with 3 biological replicates
SP:SAMPLEPREP_SUMMARY            	were rinsed by 1 mL HPLC-grade water rapidly and immediately quenched by
SP:SAMPLEPREP_SUMMARY            	directly added by 1 mL liquid nitrogen to the plate. Then, 1 mL ice-cold 90% MC
SP:SAMPLEPREP_SUMMARY            	buffer (MC, 9: 1 MeOH: CHCl3. 90% MC, 9 : 1 MC: water) with 5 µM methionine
SP:SAMPLEPREP_SUMMARY            	sulfone as internal signal was added to each well of plate and the cells were
SP:SAMPLEPREP_SUMMARY            	scraped and transferred to1.5-mL tubes. Extracts were centrifuged at 4 ℃ for 5
SP:SAMPLEPREP_SUMMARY            	min at 16,000 xg and the supernatants were transferred to new clean 1.5-mL tubes
SP:SAMPLEPREP_SUMMARY            	and equal volume of each sample was pooled for the QC sample. Finally, the
SP:SAMPLEPREP_SUMMARY            	extracts were dried using vacuum concentrator system and store at -80 ℃ until
SP:SAMPLEPREP_SUMMARY            	analysis. For targeted analysis, the dried extracts were resuspended by 100 µL
SP:SAMPLEPREP_SUMMARY            	60% acetonitrile and centrifuged at 4 ℃ for 15 min at 15,000 xg after 30 min
SP:SAMPLEPREP_SUMMARY            	incubation at 4 ℃. Only the supernatant was transferred to autosampler vials
SP:SAMPLEPREP_SUMMARY            	for MS analysis.
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE           	HILIC
CH:INSTRUMENT_NAME               	Shimadzu 20AD
CH:COLUMN_NAME                   	Merck SeQuant ZIC-HILIC (150 x 2.1mm,5um)
CH:SOLVENT_A                     	100% water, 20 mM ammonium carbonate
CH:SOLVENT_B                     	100% acetonitrile
CH:FLOW_GRADIENT                 	0.01 min 80% B, 20 min 20% B, 20.5 min 80% B, 24 min 80% B.
CH:FLOW_RATE                     	0.15 mL/min
CH:COLUMN_TEMPERATURE            	45
#ANALYSIS
AN:ANALYSIS_TYPE                 	MS
#MS
MS:INSTRUMENT_NAME               	ABI Sciex Triple Quad 5500+
MS:INSTRUMENT_TYPE               	QTRAP
MS:MS_TYPE                       	ESI
MS:ION_MODE                      	NEGATIVE
MS:MS_COMMENTS                   	The raw data were extracted with the software Analyst v1.7.2 and OS v1.7.
#MS_METABOLITE_DATA
MS_METABOLITE_DATA:UNITS	Peak intensity
MS_METABOLITE_DATA_START
Samples	QC-1	QC-2	QC-3	C1	C2	C3	C4	C5	C6	C7	C8	C9	C10	C11	C12	C13	C14	C15	C16	C17	C18
Factors	Factor:QC	Factor:QC	Factor:QC	Factor:noStressHeLa	Factor:noStressHeLa	Factor:noStressHeLa	Factor:noStressKDOGA	Factor:noStressKDOGA	Factor:noStressKDOGA	Factor:StressHeLa	Factor:StressHeLa	Factor:StressHeLa	Factor:StressKDOGA	Factor:StressKDOGA	Factor:StressKDOGA	Factor:RecoveryHeLa	Factor:RecoveryHeLa	Factor:RecoveryHeLa	Factor:RecoveryKDOGA	Factor:RecoveryKDOGA	Factor:RecoveryKDOGA
glyoxylate	14892.891	1128.051999	262.3976585	32288.05819	12792.69793	11529.8408	20098.50583	6675.919391	2753.893123	N/A	1887.495527	166.6500396	N/A	N/A	3662.206835	10169.17932	N/A	777.7501187	N/A	N/A	8233.834277
pyruvate	859656.1384	1008802.504	986468.7311	478013.0876	383633.1115	347872.2493	284065.6829	256709.1361	192468.2997	499936.4151	516766.3693	533755.7418	430731.4167	527085.5792	608688.2267	2472415.517	946915.3947	576136.8157	1945109.445	2432779.425	837842.2024
lactate	16617080.29	16144649.89	16571702.47	35320683.2	30084292.35	28977465.65	19440637.63	15551930.98	11163731.88	7933898.637	8729060.835	7999760.958	11253795.21	8941972.295	6781493.879	23934312.95	11830689.87	13662355.38	14104004.24	19433677.27	10424782.55
fumarate	622914.0293	897298.6989	755757.4333	983477.2662	848643.9611	1076461.612	544149.0571	585273.3974	534696.8648	1057240.592	1032799.482	1445980.489	633156.0234	663134.8472	554336.5136	459383.1539	392290.019	565047.0991	369931.0774	156694.3533	147158.7443
succinate	737807.3162	835026.2179	765887.274	566386.5132	487514.0043	505512.6993	482190.34	397916.6488	302217.277	1858787.373	1706622.704	1663319.312	1041787.973	1087686.399	909510.5129	973199.1856	512468.7245	639880.1519	793960.3098	1047852.74	440535.978
oxaloacetate	202740.6685	169188.3982	N/A	550277.6444	26982.42159	359365.2442	105390.0847	232622.9566	68382.70002	N/A	8708.108703	3054.116974	444.4425803	9982.39522	14385.53396	22338.52374	8631.187602	2659.088747	N/A	N/A	N/A
malate	22654785.99	29346925.02	29682833.28	39704389.45	34736253.59	44405577.1	20519306.41	24324024.18	20938954.78	45518155.62	43085177.1	55334878.36	26438572.81	24712985.52	22069534.42	18020143.42	14392363.29	20935722.52	5182921.099	5257567.3	5017525.757
a-ketoglutarate	2499614.052	2745626.323	2935306.716	2772315.521	3230655.175	3474859.44	2411937.973	2389674.54	1988040.237	5787684.304	5346278.962	5973980.534	2638659.487	1773551.422	3028993.941	2441496.494	2156642.25	3048366.667	1311045.646	1362834.259	753757.3492
phosphoenolpyruvate	8521.462834	9531.670115	26015.99536	19972.68598	15624.23881	9165.195918	20495.79117	24308.01224	20660.44504	22463.41901	8389.702186	14269.7756	9722.034881	10068.26511	16280.54451	25043.33197	18477.94384	23829.23858	17114.37186	14215.98873	16781.39692
D-glyceraldehdye-3-phosphate	1303557.269	1498778.572	1540063.794	1611620.409	1442289.299	1748049.281	1304070.362	1303022.845	1135063.658	1450067.128	1284833.935	1407053.948	1529179.79	1360650.287	1216393.206	2075404.238	1936156.169	2814841.302	1538862.646	1467522.993	1391708.129
aconitate	563377.72	725256.0002	827170.2885	1028253.403	600000.9283	1039753.909	579803.9136	851461.0121	966481.4801	464193.0778	532030.2559	577813.9272	287560.4549	280381.4505	161722.7819	1072694.567	525110.4265	943045.8058	394544.0557	513337.5833	216992.4391
citrate-isocitrate	68262.84238	207634.6567	148427.4706	724801.4908	272096.8502	218915.826	260404.9083	462203.3343	137388.0686	211957.9027	160472.0329	227918.504	61553.08826	45360.64865	84922.98901	373570.18	141865.6033	62244.62703	120209.8042	85751.23299	57175.34813
isocitrate	310270.8063	12278.08123	1554.121864	305558.9162	N/A	50802.98043	89694.88106	168416.2034	9843.816121	N/A	13231.9749	719.1760146	N/A	469.6709674	8174.685373	472.3827162	2872.013472	222.2212902	666.6726465	4369.043245	5775.323115
citrate	85685.36467	57772.34761	73919.93554	55598.08323	28496.69708	57952.4462	40647.47439	110326.827	29308.58652	10009.80321	38699.67341	80524.14913	19894.90353	21397.47263	10221.03209	69449.49306	57193.68718	23114.62427	32500.22022	88993.39385	46003.24928
glucose-6-phosphate	206404.473	225558.1808	263643.1781	416747.0147	339895.6007	427366.6647	255406.2112	389959.8145	378964.3708	112732.4234	91193.5638	138404.9646	84375.76696	87660.10802	46021.33313	245619.7551	239830.514	357836.4437	65810.80278	61877.32168	49968.174
fructose-6-phosphate	144400.2669	183104.8004	174611.0121	349917.569	270302.2488	375030.6147	317263.9949	368821.1438	368182.5354	100754.569	95501.28227	61294.11185	63220.91434	69884.54523	76680.51161	207117.9611	136283.48	285395.0518	32163.94059	61076.26198	70862.40753
1_3-diphopshateglycerate	39281.89912	27186.75631	31597.88584	33046.56109	23228.06543	19104.0562	37719.00798	29898.06215	35568.23788	20928.32996	21472.21168	47587.35376	20711.55348	27594.7827	22123.48184	26002.84122	29679.16973	45393.49519	24212.68053	38468.5525	25645.09225
N-acetyl-glucosamine-1-phosphate	117012.1743	123266.0288	122755.2385	50288.39674	51006.88935	16801.35862	223626.0271	193350.3526	202274.9449	31720.3571	48724.32033	38314.63948	379393.9578	293539.2486	241988.5903	43813.93435	33553.29045	59913.9431	89599.87047	96663.302	70593.08186
fructose-1_6-bisphosphate	207171.7253	N/A	48068.24467	N/A	N/A	985.5093144	22837.55613	57422.35965	N/A	N/A	3432.623219	553.2611573	1909.643762	61438.70408	2430.343191	310.8919315	790.9548583	2882.330532	1984.18405	357.7073567	N/A
CDP_neg	5582.728805	31125.20717	22133.65119	22443.88194	14608.9255	9674.618656	12483.01841	2984.397997	19383.43049	12926.46773	14279.85833	22012.75176	13561.06979	27736.41051	10242.54976	87802.91139	35978.76596	58404.11729	33409.37272	16846.55996	51843.44737
UDP_neg	38724.24624	48502.82143	48619.41459	20306.29969	21864.13819	24804.18516	76290.84335	101401.9249	44188.76667	20264.26071	15895.25397	18115.10475	97076.21868	98215.50026	90158.6737	22946.1063	28630.78547	31144.32379	26569.39056	40336.64372	30342.34009
ADP_neg	105651.6534	181591.6507	146712.7704	94010.26715	109425.9428	160825.7256	227313.0723	164439.9251	287447.9468	112204.5193	369017.4532	448791.0503	122494.9597	171238.9014	110137.4096	27830.23997	56047.09616	177465.8719	165627.1737	67372.9724	43231.89603
GDP_neg	12745.82096	16530.35505	11615.38379	17882.45694	8388.284513	7114.30691	7635.52883	5875.447133	13336.88442	1832.314741	11604.11455	8408.116876	9497.762317	3005.696815	5472.609898	12522.86286	2731.563208	9949.175017	14139.33518	7024.00061	4745.450268
FMN	1055.705323	N/A	N/A	N/A	2444.61079	1191.817953	1669.727373	500.0273965	503.0773285	1058.247782	1108.236522	1333.376745	2278.031909	1722.331958	1830.622583	3611.61265	1163.817366	1268.911963	777.8553225	1000.212676	1832.986182
CTP_neg	21984.64597	28027.12087	22177.16754	11043.95042	35582.91663	8021.591197	31620.18427	16474.98548	12295.93084	6693.061706	5618.034991	5880.012095	3047.068626	7543.358877	20471.84587	6267.643166	42857.19959	958.3946959	10301.84338	30480.96564	21745.96065
UTP_neg	176640.818	238570.2653	61597.26194	205648.489	160093.3591	184298.9388	91000.11025	74433.61193	188225.2545	126979.1628	349271.5545	120777.7902	113735.947	144083.6223	92824.92905	93071.1076	603069.3403	84739.25369	184328.0227	86859.60814	132492.2087
CDP-choline	296475.6542	315660.0231	325389.5854	34615.0112	35227.32682	38426.3363	48672.77128	43491.89051	29621.02323	230752.6354	242394.3823	282453.8359	406265.2556	386345.0622	447576.358	797528.5309	791198.348	1033070.535	417055.8873	488517.8722	438730.5856
ATP_neg	67498.41044	297967.2014	236555.3403	94104.36308	54782.34357	156126.3667	1225223.66	354875.724	427131.8226	852676.9519	462806.9307	741115.6102	262592.5929	381547.3611	226763.1141	315936.9912	207889.5444	208319.174	213500.561	110918.4619	216934.7543
GTP_neg	2408.617208	33825.29549	37162.08587	45059.70591	38490.60823	91748.19731	34574.20538	13718.61849	91979.00546	81022.71945	69620.97403	99260.30234	44338.80529	11852.12594	13881.87561	69818.27455	49804.38116	13523.74584	48210.35068	15863.51926	11481.80197
UDP-N-acetyl-glucosamine	2482319.286	3113221.896	3017737.514	1242851.112	1255651.258	1452987.631	5616991.352	5815845.262	5142335.864	1335113.502	1194855.364	1266787.691	6350817.726	6499511.98	6182165.788	1756252.577	1555367.197	2183496.416	2039523.954	2501221.162	1905489.714
NAD+_neg	4639777.584	5010336.422	5284903.881	10903558	11395295.07	12039532.67	9616295.677	8110462.092	9272908.243	4519403.623	4211134.249	4416688.348	2727026.412	2737738.196	2150831.039	2669562.069	2578212.299	3455462.878	728930.7295	705386.9497	826830.0363
NADH_neg	25505.79262	18785.0953	28781.71878	48459.99478	57862.0458	52213.56037	40589.95261	39283.05708	47883.52074	23058.4066	22780.66489	23724.47712	17779.83315	19057.83406	15223.85568	27558.22211	23669.81138	13375.7975	8890.51321	4497.676042	9667.640668
NADP+_neg	157596.8874	59452.86491	174793.7046	111666.3937	74398.85364	192315.2157	87010.52629	55363.30204	91898.16794	209918.8285	64125.2408	50741.63992	239187.5862	204924.4833	77898.18814	150024.8459	92424.88393	143959.6233	12773.51956	65014.10553	41186.60657
NADPH_neg	22638.97365	25125.61976	29724.92384	29534.49993	6589.981396	29164.35123	12488.58574	24791.81323	19004.46516	36660.76163	26099.50177	29953.77154	15986.06711	26904.72529	25436.49558	36488.87571	30726.11167	30362.65308	15281.34713	16890.74271	6972.975398
coenzyme A_neg	499.9554268	N/A	277.8446643	N/A	N/A	N/A	666.8233213	N/A	N/A	N/A	889.0426262	N/A	N/A	608.141991	777.8106724	N/A	833.4327065	1055.710579	333.4679724	388.9393681	222.3306575
acetyl-CoA_pos	5547.569166	5842.894514	4734.560731	4216.5367	3444.694025	3222.516016	2111.318047	N/A	1222.366007	6226.226026	8167.657189	7896.139056	8482.265937	9692.845214	2858.505884	10112.53397	3389.129925	2228.251407	6278.93032	3795.788067	1914.009336
succinyl-CoA-methylmalonyl-CoA_neg	277.9073273	N/A	388.8713297	N/A	N/A	N/A	N/A	277.8286967	N/A	222.2213264	N/A	N/A	N/A	N/A	222.3573141	N/A	611.1606715	N/A	222.2160204	499.9820276	N/A
MS_METABOLITE_DATA_END
#METABOLITES
METABOLITES_START
metabolite_name	Precursor ion (m/z)	Product ion (m/z)	Retention time (min)
glyoxylate	73	45	4.16
pyruvate	87	43	3.66
lactate	89	43.2	3.9
fumarate	115	71	9.7
succinate	117	73	9.06
oxaloacetate	131	87
malate	133	115	9.8
a-ketoglutarate	145	101	9.28
phosphoenolpyruvate	167	79	11.14
D-glyceraldehdye-3-phosphate	169.05	97	9.6
aconitate	173.05	85	11.12
citrate-isocitrate	191	111	11.45
isocitrate	191.02	117
citrate	191.05	87
glucose-6-phosphate	259.02	199	10.25
fructose-6-phosphate	259.03	169	9.7
1_3-diphopshateglycerate	265	79
N-acetyl-glucosamine-1-phosphate	300	79
fructose-1_6-bisphosphate	339	97
CDP_neg	402	384	10.82
UDP_neg	403	159	10.24
ADP_neg	426.1	159	10.34
GDP_neg	442	159	12.06
FMN	455	213
CTP_neg	482	384
UTP_neg	483	159	12.6
CDP-choline	487	428
ATP_neg	506.1	159	11.56
GTP_neg	522	424	13.46
UDP-N-acetyl-glucosamine	606	385	8.95
NAD+_neg	662	540	7.7
NADH_neg	664	408	7.14
NADP+_neg	742	620	10.64
NADPH_neg	744	408	10.62
coenzyme A_neg	766	408	8.15
acetyl-CoA_pos	808	408	7.21
succinyl-CoA-methylmalonyl-CoA_neg	866.2	822
METABOLITES_END
#END