#METABOLOMICS WORKBENCH araskind_20150608_9329301_mwtab.txt DATATRACK_ID:288 STUDY_ID:ST000190 ANALYSIS_ID:AN000291 PROJECT_ID:PR000161 VERSION 1 CREATED_ON 2016-09-17 #PROJECT PR:PROJECT_TITLE Zinc Studies PR:PROJECT_SUMMARY Zinc Deficiency and SCFA PR:INSTITUTE USDA-ARS, Cornell University PR:DEPARTMENT Trace minerals and Nutrition PR:LABORATORY Tako Lab PR:LAST_NAME Tako PR:FIRST_NAME Elad PR:ADDRESS Ithaca, New York PR:EMAIL et79@cornell.edu PR:PHONE 607-255-5434 #STUDY ST:STUDY_TITLE Trace minerals and Nutrition Zinc study ST:STUDY_TYPE Assessment of dietary zinc on SCFA cecal production ST:STUDY_SUMMARY Assessment of dietary zinc on SCFA cecal production ST:INSTITUTE University of Michigan ST:DEPARTMENT Biomedical Research Core Facilities ST:LABORATORY Metabolomics core ST:LAST_NAME Kachman ST:FIRST_NAME Maureen ST:ADDRESS 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 ST:EMAIL mkachman@umich.edu ST:PHONE - ST:NUM_GROUPS 2 ST:TOTAL_SUBJECTS 12 #SUBJECT SU:SUBJECT_TYPE - SU:SUBJECT_SPECIES Gallus gallus SU:TAXONOMY_ID 9031 #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Additional sample data SUBJECT_SAMPLE_FACTORS SU0005095 S00016508 Zink:MINUS SUBJECT_SAMPLE_FACTORS SU0005095 S00016509 Zink:MINUS SUBJECT_SAMPLE_FACTORS SU0005095 S00016510 Zink:MINUS SUBJECT_SAMPLE_FACTORS SU0005095 S00016511 Zink:MINUS SUBJECT_SAMPLE_FACTORS SU0005095 S00016512 Zink:MINUS SUBJECT_SAMPLE_FACTORS SU0005095 S00016513 Zink:MINUS SUBJECT_SAMPLE_FACTORS SU0005096 S00016514 Zink:PLUS SUBJECT_SAMPLE_FACTORS SU0005096 S00016515 Zink:PLUS SUBJECT_SAMPLE_FACTORS SU0005096 S00016516 Zink:PLUS SUBJECT_SAMPLE_FACTORS SU0005096 S00016517 Zink:PLUS SUBJECT_SAMPLE_FACTORS SU0005096 S00016518 Zink:PLUS SUBJECT_SAMPLE_FACTORS SU0005096 S00016519 Zink:PLUS #COLLECTION CO:COLLECTION_SUMMARY - CO:SAMPLE_TYPE Intestinal Secretions #TREATMENT TR:TREATMENT_SUMMARY - #SAMPLEPREP SP:SAMPLEPREP_SUMMARY - SP:SAMPLEPREP_PROTOCOL_FILENAME SCFA_analysis_protocol-2015-03-10.docx #CHROMATOGRAPHY CH:CHROMATOGRAPHY_TYPE GC CH:INSTRUMENT_NAME - CH:COLUMN_NAME Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um) CH:METHODS_ID AQM030 CH:METHODS_FILENAME WAXPLUS_100-200C_2_SIM.txt #ANALYSIS AN:ANALYSIS_TYPE MS AN:LABORATORY_NAME MRC2 (University of Michigan) AN:ACQUISITION_PARAMETERS_FILE WAXPLUS_100-200C_2_SIM.txt AN:PROCESSING_PARAMETERS_FILE EX00360-SCFA-Quant-methods.m.zip #MS MS:MS_COMMENTS - MS:INSTRUMENT_NAME Agilent 5975C MS:INSTRUMENT_TYPE Single quadrupole MS:MS_TYPE EI MS:ION_MODE POSITIVE #MS_METABOLITE_DATA MS_METABOLITE_DATA:UNITS pmol/mg dry weight MS_METABOLITE_DATA_START Samples S00016508 S00016509 S00016510 S00016511 S00016512 S00016513 S00016514 S00016515 S00016516 S00016517 S00016518 S00016519 Factors Zink:MINUS Zink:MINUS Zink:MINUS Zink:MINUS Zink:MINUS Zink:MINUS Zink:PLUS Zink:PLUS Zink:PLUS Zink:PLUS Zink:PLUS Zink:PLUS aceticacid 28.7142 40.5676 74.1352 139.9315 15.0318 41.1993 279.2641 49.7022 85.5670 59.3735 58.7670 63.7693 butyricacid 0.0000 7.6274 79.6318 63.6687 0.0000 12.8285 77.0638 29.1437 29.2628 61.9841 52.4931 38.6904 heptanoicacid 0.9106 0.0000 0.0000 0.0000 0.7165 1.0420 1.2446 0.0000 0.0000 0.0000 0.0000 0.0000 hexanoicacid 0.0000 0.0000 0.0000 0.0000 0.2308 0.0000 0.0000 0.5359 0.0000 0.0000 0.2765 0.6925 iso-butyricacid 1.2490 1.0271 5.4886 4.6484 0.2300 1.3585 2.8931 1.2484 0.9720 1.4107 2.2637 1.8591 isovalericacid 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 propionicacid 0.0000 0.4267 5.4279 17.7967 0.0000 15.7052 7.7284 1.9782 0.4145 2.3924 5.9496 4.3529 valericacid 1.3545 0.6144 3.0860 3.1713 1.0288 1.2744 3.8695 0.8166 1.0214 1.1353 1.0462 0.9725 MS_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name moverz_quant ri ri_type pubchem_id inchi_key kegg_id other_id other_id_type aceticacid 176 Acetate UM_Target_ID butyricacid 20975673 Butyrate UM_Target_ID heptanoicacid 8094 Heptanoate UM_Target_ID hexanoicacid 8892 Hexanoate UM_Target_ID iso-butyricacid 6590 iso-butyrate UM_Target_ID isovalericacid 10430 Isovalerate UM_Target_ID propionicacid 1032 Propionate UM_Target_ID valericacid 7991 Valerate UM_Target_ID METABOLITES_END #END