#METABOLOMICS WORKBENCH araskind_20170619_104715 DATATRACK_ID:982 STUDY_ID:ST000687 ANALYSIS_ID:AN001060 VERSION 1 CREATED_ON 12-15-2022 #PROJECT PR:PROJECT_TITLE Metabolic changes driven by Adenylate Kinase 4 PR:PROJECT_TYPE MS analysis PR:PROJECT_SUMMARY Identify metabolic changed driven by Adenylate Kinase 4 PR:INSTITUTE Van Andel Research Institute PR:DEPARTMENT Center for Cancer and Cell Biology PR:LABORATORY MacKeigan Lab PR:LAST_NAME Lanning PR:FIRST_NAME Nate PR:ADDRESS 333 Bostwick Ave N.E. Grand Rapids, MI 49503 PR:EMAIL nate.lanning@vai.org PR:PHONE 000-000-0000 PR:DOI http://dx.doi.org/10.21228/M87G8X #STUDY ST:STUDY_TITLE Nucleotide Analysis following Adenylate Kinase 4 knockdown ST:STUDY_TYPE MS analysis ST:STUDY_SUMMARY Nucleotide Analysis following Adenylate Kinase 4 knockdown ST:INSTITUTE University of Michigan ST:DEPARTMENT Biomedical Research Core Facilities ST:LABORATORY Metabolomics core ST:LAST_NAME Kachman ST:FIRST_NAME Maureen ST:ADDRESS 6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714 ST:EMAIL mkachman@med.umich.edu ST:PHONE (734) 232-8175 ST:SUBMIT_DATE 2017-06-19 #SUBJECT SU:SUBJECT_TYPE HUMAN SU:SUBJECT_SPECIES Homo sapiens SU:TAXONOMY_ID 9606 SU:SPECIES_GROUP Human #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Additional sample data SUBJECT_SAMPLE_FACTORS SU0002932 S00012745 TYPE:AK4 SUBJECT_SAMPLE_FACTORS SU0002932 S00012746 TYPE:AK4 SUBJECT_SAMPLE_FACTORS SU0002932 S00012747 TYPE:AK4 SUBJECT_SAMPLE_FACTORS SU0002932 S00012748 TYPE:AK4 SUBJECT_SAMPLE_FACTORS SU0002932 S00012749 TYPE:AK4 SUBJECT_SAMPLE_FACTORS SU0002932 S00012740 TYPE:Control SUBJECT_SAMPLE_FACTORS SU0002932 S00012741 TYPE:Control SUBJECT_SAMPLE_FACTORS SU0002932 S00012742 TYPE:Control SUBJECT_SAMPLE_FACTORS SU0002932 S00012743 TYPE:Control SUBJECT_SAMPLE_FACTORS SU0002932 S00012744 TYPE:Control #COLLECTION CO:COLLECTION_SUMMARY - #TREATMENT TR:TREATMENT_SUMMARY - #SAMPLEPREP SP:SAMPLEPREP_SUMMARY - SP:SAMPLEPREP_PROTOCOL_FILENAME A012_-_NAD-Related_Metabolites.pdf #CHROMATOGRAPHY CH:INSTRUMENT_NAME Agilent CH:COLUMN_NAME Phenomenex Luna NH2 (150 x 1mm,3um) CH:FLOW_GRADIENT 0min, 80%B, 15min, 0%B, 20min, 0%B, 35min, 80%B CH:FLOW_RATE 75ul/min CH:SOLVENT_A 100% water; 5mM ammonium acetate, pH 9.9 CH:SOLVENT_B 100% acetonitrile CH:CHROMATOGRAPHY_TYPE HILIC #ANALYSIS AN:ANALYSIS_TYPE MS AN:ANALYSIS_PROTOCOL_FILE A012_-_NAD-Related_Metabolites.pdf #MS MS:INSTRUMENT_NAME Agilent 6520B QTOF MS:INSTRUMENT_TYPE QTOF MS:MS_TYPE ESI MS:ION_MODE NEGATIVE #MS_METABOLITE_DATA MS_METABOLITE_DATA:UNITS nmol/plate MS_METABOLITE_DATA_START Samples S00012745 S00012746 S00012747 S00012748 S00012749 S00012740 S00012741 S00012742 S00012743 S00012744 Factors TYPE:AK4 TYPE:AK4 TYPE:AK4 TYPE:AK4 TYPE:AK4 TYPE:Control TYPE:Control TYPE:Control TYPE:Control TYPE:Control 6-PHOSPHOGLUCONIC ACID 18.8825 22.3426 22.0474 18.6260 18.1497 26.1800 30.0971 19.7105 17.3406 19.7924 ACETOACETYL-COA 0.4968 0.5525 0.3976 0.2693 0.1459 0.5866 0.1759 0.3547 0.5356 0.4958 ADENOSINE 5^-DIPHOSPHATE 27.1465 26.0922 25.7087 24.4617 17.9655 45.9232 25.0778 16.2704 20.0361 34.6100 ADENOSINE 5^-MONOPHOSPHATE 3.7618 3.6164 3.5399 3.2844 2.0193 5.8099 3.0707 1.7410 2.7435 4.7229 ADENOSINE TRIPHOSPHATE 225.2333 239.8696 194.4392 259.5864 158.7814 180.4708 163.7025 186.2094 192.9822 225.1487 BETA-NAD+ 14.6542 13.7282 18.4139 17.6925 15.4709 10.4543 12.0048 11.3392 14.1718 16.4510 CITRIC ACID 34.7718 44.1374 35.7117 46.0862 34.5927 44.8852 40.4716 40.6755 37.0812 42.8388 COENZYME II 1.4856 1.2530 1.0413 1.5383 0.8205 1.7662 1.0340 0.6220 0.5172 1.4784 D-FRUCTOSE_ 1_6-BIS(DIHYDROGEN PHOSPHATE) 32.0547 26.1498 35.4372 63.8442 46.2798 27.6266 34.0275 27.3182 21.1420 25.7175 FAD 0.5699 0.4570 0.6434 0.5433 0.5818 0.3653 0.4568 0.3858 0.5678 0.6282 GLYCERATE 3-PHOSPHATE 4.2525 3.5463 4.7835 5.3230 4.2295 4.6118 7.3726 4.2772 2.4509 4.5104 MALIC ACID 39.6053 38.0695 40.1153 47.7029 43.8176 37.4222 40.5989 37.2119 35.4745 41.7797 NADH 8.9246 9.6242 4.8381 3.6268 3.5262 17.1543 4.1087 3.8190 7.2403 13.1037 NADP-REDUCED 24.2535 31.9854 28.1294 26.6772 30.3010 44.2991 25.3814 24.6708 29.3079 31.7589 PHOSPHOENOLPYRUVATE 1.3078 0.8061 1.0918 0.9472 1.1922 2.7811 3.2109 2.1936 2.5256 1.6415 ROBISON ESTER 12.4237 12.0723 11.7056 16.2958 7.3525 9.4888 5.8337 8.3514 11.7879 12.9364 SUCROSE 9.2341 13.8915 7.9517 13.4576 8.0705 21.3511 8.0664 8.1463 7.7638 12.2450 MS_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name pubchem_id inchi_key kegg_id other_id other_id_type ri ri_type moverz_quant 6-PHOSPHOGLUCONIC ACID 91493 ACETOACETYL-COA 92153 ADENOSINE 5'-DIPHOSPHATE 6022 ADENOSINE 5'-MONOPHOSPHATE 6083 ADENOSINE TRIPHOSPHATE 5957 BETA-NAD+ 15938971 CITRIC ACID 311 COENZYME II 15938972 D-FRUCTOSE, 1,6-BIS(DIHYDROGEN PHOSPHATE) 21125049 FAD 46906035 GLYCERATE 3-PHOSPHATE 724 MALIC ACID 525 NADH 439153 NADP-REDUCED 22833512 PHOSPHOENOLPYRUVATE 1005 ROBISON ESTER 5958 SUCROSE 5988 METABOLITES_END #END