#METABOLOMICS WORKBENCH ariesm_20211109_151304 DATATRACK_ID:2919 STUDY_ID:ST001966 ANALYSIS_ID:AN003204 PROJECT_ID:PR001252 VERSION 1 CREATED_ON November 9, 2021, 7:32 pm #PROJECT PR:PROJECT_TITLE NMR Hydrophilic Metabolomic Analysis of Bacterial Resistance Pathways using PR:PROJECT_TITLE Multivalent Antimicrobials with Challenged and Unchallenged Wild Type and PR:PROJECT_TITLE Mutated Gram Positive Bacteria PR:PROJECT_SUMMARY Multivalent membrane disruptors are a relatively new antimicrobial scaffold that PR:PROJECT_SUMMARY are difficult for bacteria to develop resistance to and can act on both PR:PROJECT_SUMMARY gram-positive and gram-negative bacteria. Nuclear Magnetic Resonance (NMR) PR:PROJECT_SUMMARY metabolomics is an important method for studying resistance development in PR:PROJECT_SUMMARY bacteria since it is both a quantitative and qualitative method to study and PR:PROJECT_SUMMARY identify phenotypes by changes in metabolic pathways. The objectives are to PR:PROJECT_SUMMARY determine the likely metabolic differences between antimicrobially challenged PR:PROJECT_SUMMARY and unchallenged growth and wild type and antimicrobially mutated Bacillus PR:PROJECT_SUMMARY cereus (B. cereus) samples by using NMR hydrophilic metabolomics. Proton (1H) PR:PROJECT_SUMMARY NMR hydrophilic metabolite analysis was conducted using B. cereus wild type and PR:PROJECT_SUMMARY B. cereus that was mutated with C16-DABCO and mannose functionalized PR:PROJECT_SUMMARY poly(amidoamine) dendrimers (DABCOMD). Both the wild type and the mutated sample PR:PROJECT_SUMMARY types were grown in low levels of DABCOMD (challenged samples) or without the PR:PROJECT_SUMMARY addition of DABCOMD to the growth media (unchallenged samples) for sample PR:PROJECT_SUMMARY collection at the mid log and stationary phases and for growth curve PR:PROJECT_SUMMARY procurement. Hierarchical clustering of only the challenged sample type showed PR:PROJECT_SUMMARY that both the stationary phase sample types (mutant and wild type) clustered PR:PROJECT_SUMMARY together while the both the mid log phase sample types were distinct. PR:PROJECT_SUMMARY Hierarchical clustering of the unchallenged samples showed complete separation PR:PROJECT_SUMMARY of all sample types. There were statistically significant (p-value and fold PR:PROJECT_SUMMARY change) changes in the concentrations of metabolites in both energy related PR:PROJECT_SUMMARY pathways and peptidoglycan synthesis between all sample types, especially with PR:PROJECT_SUMMARY mutants and especially the challenged sample types have more N-acetylglucosamine PR:PROJECT_SUMMARY (as much as a 94.2-fold increase). The mid log phase sample types showed a PR:PROJECT_SUMMARY larger difference between sample types than their stationary phase counter PR:PROJECT_SUMMARY parts. The challenged and unchallenged mutant samples showed a larger difference PR:PROJECT_SUMMARY between sample types in comparison to the differences between the challenged and PR:PROJECT_SUMMARY unchallenged wild type sample types. There was a larger metabolite difference PR:PROJECT_SUMMARY when comparing the challenged mutant samples to the challenged wild type samples PR:PROJECT_SUMMARY than when comparing the unchallenged mutant samples to the unchallenged wild PR:PROJECT_SUMMARY type samples. The metabolomic analysis of wild type and multivalent DABCOMD PR:PROJECT_SUMMARY mutated B. cereus under both challenged and unchallenged conditions indicated PR:PROJECT_SUMMARY that the mutants, especially the challenged mutants, are likely changing their PR:PROJECT_SUMMARY peptidoglycan layer to protect themselves from the high positive charge on the PR:PROJECT_SUMMARY membrane disrupting DABCOMD. This membrane fortification most likely led to the PR:PROJECT_SUMMARY slow growth curve of the mutated and especially the challenged mutant samples. PR:PROJECT_SUMMARY The association of these sample types with metabolites associated with energy PR:PROJECT_SUMMARY expenditure is attributed to the increased energy required for these changes to PR:PROJECT_SUMMARY occur as well as to the decreased diffusion of nutrients across the membrane. PR:INSTITUTE Montana State University PR:DEPARTMENT Chemistry and Biochemistry PR:LABORATORY Dr. Mary Cloninger PR:LAST_NAME Aries PR:FIRST_NAME Michelle PR:ADDRESS 103 Chemistry and Biochemistry Building, Bozeman, Montana, 59717, USA PR:EMAIL p49k881@msu.montana.edu PR:PHONE 406-994-3051 PR:FUNDING_SOURCE NIGMS, grant number 62444 PR:CONTRIBUTORS Dr. Mary Cloninger #STUDY ST:STUDY_TITLE NMR Hydrophilic Metabolomic Analysis of Bacterial Resistance Pathways using ST:STUDY_TITLE Multivalent Antimicrobials with Challenged and Unchallenged Wild Type and ST:STUDY_TITLE Mutated Gram Positive Bacteria ST:STUDY_TYPE NMR Hydrophilic Metabolomics ST:STUDY_SUMMARY Multivalent membrane disruptors are a relatively new antimicrobial scaffold that ST:STUDY_SUMMARY are difficult for bacteria to develop resistance to and can act on both ST:STUDY_SUMMARY gram-positive and gram-negative bacteria. Nuclear Magnetic Resonance (NMR) ST:STUDY_SUMMARY metabolomics is an important method for studying resistance development in ST:STUDY_SUMMARY bacteria since it is both a quantitative and qualitative method to study and ST:STUDY_SUMMARY identify phenotypes by changes in metabolic pathways. Determine the likely ST:STUDY_SUMMARY metabolic differences between antimicrobially challenged and unchallenged growth ST:STUDY_SUMMARY and wild type and antimicrobially mutated Bacillus cereus (B. cereus) samples by ST:STUDY_SUMMARY using NMR hydrophilic metabolomics. Proton (1H) NMR hydrophilic metabolite ST:STUDY_SUMMARY analysis was conducted using B. cereus wild type and B. cereus that was mutated ST:STUDY_SUMMARY with C16-DABCO and mannose functionalized poly(amidoamine) dendrimers (DABCOMD). ST:STUDY_SUMMARY Both the wild type and the mutated sample types were grown in low levels of ST:STUDY_SUMMARY DABCOMD (challenged samples) or without the addition of DABCOMD to the growth ST:STUDY_SUMMARY media (unchallenged samples) for sample collection at the mid log and stationary ST:STUDY_SUMMARY phases and for growth curve procurement. Hierarchical clustering of only the ST:STUDY_SUMMARY challenged sample type showed that both the stationary phase sample types ST:STUDY_SUMMARY (mutant and wild type) clustered together while the both the mid log phase ST:STUDY_SUMMARY sample types were distinct. Hierarchical clustering of the unchallenged samples ST:STUDY_SUMMARY showed complete separation of all sample types. There were statistically ST:STUDY_SUMMARY significant (p-value and fold change) changes in the concentrations of ST:STUDY_SUMMARY metabolites in both energy related pathways and peptidoglycan synthesis between ST:STUDY_SUMMARY all sample types, especially with mutants and especially the challenged sample ST:STUDY_SUMMARY types have more N-acetylglucosamine (as much as a 94.2-fold increase). The mid ST:STUDY_SUMMARY log phase sample types showed a larger difference between sample types than ST:STUDY_SUMMARY their stationary phase counter parts. The challenged and unchallenged mutant ST:STUDY_SUMMARY samples showed a larger difference between sample types in comparison to the ST:STUDY_SUMMARY differences between the challenged and unchallenged wild type sample types. ST:STUDY_SUMMARY There was a larger metabolite difference when comparing the challenged mutant ST:STUDY_SUMMARY samples to the challenged wild type samples than when comparing the unchallenged ST:STUDY_SUMMARY mutant samples to the unchallenged wild type samples. The metabolomic analysis ST:STUDY_SUMMARY of wild type and multivalent DABCOMD mutated B. cereus under both challenged and ST:STUDY_SUMMARY unchallenged conditions indicated that the mutants, especially the challenged ST:STUDY_SUMMARY mutants, are likely changing their peptidoglycan layer to protect themselves ST:STUDY_SUMMARY from the high positive charge on the membrane disrupting DABCOMD. This membrane ST:STUDY_SUMMARY fortification most likely led to the slow growth curve of the mutated and ST:STUDY_SUMMARY especially the challenged mutant samples. The association of these sample types ST:STUDY_SUMMARY with metabolites associated with energy expenditure is attributed to the ST:STUDY_SUMMARY increased energy required for these changes to occur as well as to the decreased ST:STUDY_SUMMARY diffusion of nutrients across the membrane. ST:INSTITUTE Montana State University ST:DEPARTMENT Chemistry and Biochemistry ST:LABORATORY Dr. Mary Cloninger ST:LAST_NAME Aries ST:FIRST_NAME Michelle ST:ADDRESS 103 Chemistry and Biochemistry Building ST:EMAIL p49k881@msu.montana.edu ST:PHONE 406-994-3051 #SUBJECT SU:SUBJECT_TYPE Bacteria SU:SUBJECT_SPECIES Bacillus cereus SU:TAXONOMY_ID 11778 SU:GENDER Not applicable #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS - WT_1_1 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - WT_1_1 - ML SUBJECT_SAMPLE_FACTORS - WT_1_2 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - WT_1_2 - ML SUBJECT_SAMPLE_FACTORS - WT_1_4 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - WT_1_4 - ML SUBJECT_SAMPLE_FACTORS - WT_1_5 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - WT_1_5 - ML SUBJECT_SAMPLE_FACTORS - WT_1_6 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - WT_1_6 - ML SUBJECT_SAMPLE_FACTORS - WT_2_22 Genotype:Wild-type | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - WT_2_22 - S SUBJECT_SAMPLE_FACTORS - WT_2_23 Genotype:Wild-type | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - WT_2_23 - S SUBJECT_SAMPLE_FACTORS - WT_2_25 Genotype:Wild-type | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - WT_2_25 - S SUBJECT_SAMPLE_FACTORS - WT_2_27 Genotype:Wild-type | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - WT_2_27 - S SUBJECT_SAMPLE_FACTORS - WT_2_173 Genotype:Wild-type | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - WT_2_173 - S SUBJECT_SAMPLE_FACTORS - WT_3_9 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_3_9 - D ML SUBJECT_SAMPLE_FACTORS - WT_3_42 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_3_42 - D ML SUBJECT_SAMPLE_FACTORS - WT_3_43 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_3_43 - D ML SUBJECT_SAMPLE_FACTORS - WT_3_44 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_3_44 - D ML SUBJECT_SAMPLE_FACTORS - WT_3_45 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_3_45 - D ML SUBJECT_SAMPLE_FACTORS - WT_3_46 Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_3_46 - D ML SUBJECT_SAMPLE_FACTORS - WT_4_65 Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_4_65 - D S SUBJECT_SAMPLE_FACTORS - WT_4_67 Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_4_67 - D S SUBJECT_SAMPLE_FACTORS - WT_4_68 Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_4_68 - D S SUBJECT_SAMPLE_FACTORS - WT_4_69 Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_4_69 - D S SUBJECT_SAMPLE_FACTORS - WT_4_70 Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - WT_4_70 - D S SUBJECT_SAMPLE_FACTORS - Mut_1_10 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_10 - ML SUBJECT_SAMPLE_FACTORS - Mut_1_11 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_11 - ML SUBJECT_SAMPLE_FACTORS - Mut_1_99 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_99 - ML SUBJECT_SAMPLE_FACTORS - Mut_1_100 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_100 - ML SUBJECT_SAMPLE_FACTORS - Mut_1_101 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_101 - ML SUBJECT_SAMPLE_FACTORS - Mut_1_102 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_102 - ML SUBJECT_SAMPLE_FACTORS - Mut_1_175 Genotype:Mutant | Growth Phase:Mid Log | Treatment:None RAW_FILE_NAME=fid - Mut_1_175 - ML SUBJECT_SAMPLE_FACTORS - Mut_2_111 Genotype:Mutant | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - Mut_2_111 - S SUBJECT_SAMPLE_FACTORS - Mut_2_112 Genotype:Mutant | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - Mut_2_112 - S SUBJECT_SAMPLE_FACTORS - Mut_2_113 Genotype:Mutant | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - Mut_2_113 - S SUBJECT_SAMPLE_FACTORS - Mut_2_114 Genotype:Mutant | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - Mut_2_114 - S SUBJECT_SAMPLE_FACTORS - Mut_2_115 Genotype:Mutant | Growth Phase:Stationary | Treatment:None RAW_FILE_NAME=fid - Mut_2_115 - S SUBJECT_SAMPLE_FACTORS - Mut_3_57 Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_3_57 - D ML SUBJECT_SAMPLE_FACTORS - Mut_3_58 Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_3_58 - D ML SUBJECT_SAMPLE_FACTORS - Mut_3_60 Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_3_60 - D ML SUBJECT_SAMPLE_FACTORS - Mut_3_61 Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_3_61 - D ML SUBJECT_SAMPLE_FACTORS - Mut_3_63 Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_3_63 - D ML SUBJECT_SAMPLE_FACTORS - Mut_3_64 Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_3_64 - D ML SUBJECT_SAMPLE_FACTORS - Mut_4_81 Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_4_81 - D S SUBJECT_SAMPLE_FACTORS - Mut_4_82 Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_4_82 - D S SUBJECT_SAMPLE_FACTORS - Mut_4_83 Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_4_83 - D S SUBJECT_SAMPLE_FACTORS - Mut_4_84 Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_4_84 - D S SUBJECT_SAMPLE_FACTORS - Mut_4_85 Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_4_85 - D S SUBJECT_SAMPLE_FACTORS - Mut_4_86 Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD RAW_FILE_NAME=fid - Mut_4_86 - D S #COLLECTION CO:COLLECTION_SUMMARY Samples were collected in screw-cap conical centrifuge tubes for all sample CO:COLLECTION_SUMMARY types in both the mid log and stationary phases. They were centrifuged, the CO:COLLECTION_SUMMARY supernatant was discarded, they were rinsed with cold 1x PBS and transferred to CO:COLLECTION_SUMMARY glass centrifuge tubes. They were centrifuged, the supernantant was discarded CO:COLLECTION_SUMMARY and the cell pellets were frozen at - 80 C. CO:SAMPLE_TYPE Bacterial cells CO:STORAGE_CONDITIONS -80℃ #TREATMENT TR:TREATMENT_SUMMARY Unchallenged samples of both WT and Mut bacteria were grown in Brodo Mueller TR:TREATMENT_SUMMARY Hinton II Media (BMHII), the challenged samples (WT D and Mut D) were grown in TR:TREATMENT_SUMMARY BMHII with 33 % of the MIC value DABCOMD added to the media. All other TR:TREATMENT_SUMMARY procedures were the same between the two groups. #SAMPLEPREP SP:SAMPLEPREP_SUMMARY Hydrophilic metabolites were obtained from the aqueous layer of the SP:SAMPLEPREP_SUMMARY methanol/water/chloroform extraction. An acetone precipitation was used to SP:SAMPLEPREP_SUMMARY extract the proteins. Metabolite samples were prepared by taking the supernatant SP:SAMPLEPREP_SUMMARY obtained after acetone precipitation, speed vacuuming them down and adding 700 SP:SAMPLEPREP_SUMMARY µL of the NMR buffer. The mixture was vortexed and transferred to capped glass SP:SAMPLEPREP_SUMMARY NMR tube. #ANALYSIS AN:ANALYSIS_TYPE NMR #NMR NM:INSTRUMENT_NAME Bruker Avance III 600 MHz NMR NM:INSTRUMENT_TYPE FT-NMR NM:NMR_EXPERIMENT_TYPE 1D-1H NM:SPECTROMETER_FREQUENCY 600 MHz NM:NMR_PROBE 5 mm triple resonance (1H, 15N, 13C) liquid-helium cooled TCI NMR CryoProbe #NMR_METABOLITE_DATA NMR_METABOLITE_DATA:UNITS mM NMR_METABOLITE_DATA_START Samples WT_1_1 WT_1_2 WT_1_4 WT_1_5 WT_1_6 WT_3_9 WT_3_42 WT_3_43 WT_3_44 WT_3_45 WT_3_46 Mut_1_10 Mut_1_11 Mut_1_99 Mut_1_100 Mut_1_101 Mut_1_102 Mut_1_175 Mut_3_57 Mut_3_58 Mut_3_60 Mut_3_61 Mut_3_63 Mut_3_64 WT_2_22 WT_2_23 WT_2_25 WT_2_27 WT_2_173 WT_4_65 WT_4_67 WT_4_68 WT_4_69 WT_4_70 Mut_2_111 Mut_2_112 Mut_2_113 Mut_2_114 Mut_2_115 Mut_4_81 Mut_4_82 Mut_4_83 Mut_4_84 Mut_4_85 Mut_4_86 Factors Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None Genotype:Wild-type | Growth Phase:Mid Log | Treatment:None Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:None Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Mid Log | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Stationary | Treatment:None Genotype:Wild-type | Growth Phase:Stationary | Treatment:None Genotype:Wild-type | Growth Phase:Stationary | Treatment:None Genotype:Wild-type | Growth Phase:Stationary | Treatment:None Genotype:Wild-type | Growth Phase:Stationary | Treatment:None Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Wild-type | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Stationary | Treatment:None Genotype:Mutant | Growth Phase:Stationary | Treatment:None Genotype:Mutant | Growth Phase:Stationary | Treatment:None Genotype:Mutant | Growth Phase:Stationary | Treatment:None Genotype:Mutant | Growth Phase:Stationary | Treatment:None Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD Genotype:Mutant | Growth Phase:Stationary | Treatment:DABCOMD Acetate 6.568329688 6.974254124 11.21505924 9.538490417 11.12265397 7.188015913 6.202498725 6.700618377 11.34778758 7.774375805 7.044996817 9.810295707 13.8393011 6.416100659 5.690556634 5.928849466 6.27233349 6.486860721 9.26838514 8.17257382 11.46608183 9.818245971 13.13904918 10.37847939 5.628806879 12.77861697 5.15507235 3.665768054 11.63175876 3.706611794 4.962435218 4.447219954 4.187655313 4.5789116 2.04912971 2.583757558 1.890822571 1.899786746 2.091373866 6.728689492 3.624608032 6.267213082 4.338661155 6.529980984 5.361140717 Acetoacetate 0.234815815 0.289563268 0.367239147 0.313418106 0.330545558 0.389555652 0.342307027 0.426375075 0.309298305 0.42558017 0.464847303 0.118138238 0.13655788 0.13289526 0.103575851 0.050996189 0.096722481 0.118763871 0.18586906 0.214693571 0.25319519 0.182972164 0.248022329 0.311874932 0.426882326 0.302109068 0.230648314 0.205137781 0.238315282 0.348594791 0.318719942 0.28555721 0.307638244 0.233676617 0.617826593 0.501483207 0.304021678 0.446854851 0.494127278 0.282880756 0.316000801 0.437093814 0.377586313 0.3896565 0.333612921 Adenine 5.326376843 3.953559172 3.93440904 3.392139519 3.213695663 3.267534555 3.919967571 4.065608132 3.376164012 3.815813172 3.656129458 2.269540024 2.296929386 3.000014733 3.077846234 2.990058456 2.648822762 2.211635028 1.931448556 2.593668957 2.466611208 1.226787192 0.959760201 1.540699906 3.928443466 4.636045354 4.27772338 4.786180819 2.95791321 3.793252829 2.605735436 2.143013456 2.95790557 2.739296356 5.873711711 4.808472866 7.435312779 4.329751826 4.040593899 1.7364817 1.886300365 2.249798253 2.057112062 1.906458368 2.154294399 Adenosine 0.064788597 0.042033378 0.080348804 0.0639919 0.07298819 0.061751992 0.176965178 0.141647408 0.075037651 0.08444898 0.062648967 0.096037547 0.256315263 0.12994858 0.222057452 0.140239519 0.207475693 0.286784646 0.21215975 0.482278539 0.332753536 0.231109468 0.249514442 0.197093505 0.134360444 0.555945772 0.187429892 0.558293752 0.371231867 0.522215303 0.482839768 0.164929305 0.122995055 0.149511213 1.554665012 0.832454536 2.090900078 0.874726044 0.877149015 0.994569067 0.456715169 0.071508778 0.046047111 0.046036637 0.102795664 Alanine 11.1775756 10.39487158 8.866167423 11.08581456 11.46439261 15.98270384 14.92769563 11.30989055 9.9011253 13.94342052 18.32422045 5.580625329 6.731829617 10.92894082 11.50762104 11.08516092 11.44191128 11.21908103 6.053584094 5.974168525 7.117295621 7.200013441 7.205330491 7.359350457 4.786302912 5.07619169 4.955037085 5.561282643 7.155169728 8.24849732 9.86470586 10.13541283 9.400838374 10.35704951 8.363762116 8.788284563 7.158028185 9.861385193 8.042342628 7.115938607 8.479860256 7.392686576 8.42628028 8.20836242 8.866914301 AMP 0 0 0 0 0 0 0 0 0 0 0 0.133809637 0.144742737 0.105785806 0.087905704 0.121794089 0.028957039 0.016145319 0.129007802 0.052607034 0.073508281 0.06678736 0.039706783 0.045222841 0 0.101697397 0.073006119 0.092519473 0.078919222 0.094086749 0.084535038 0.079529017 0.095885941 0.067959642 0.353085282 0.135612894 0.144200005 0.170455062 0.163943328 0.098701299 0.05943969 0.08586797 0.101303645 0.106817033 0.11477798 Aspartate 0.408613798 0.35564043 0.432713058 0.801178589 0.729298929 0.676891452 0.37238239 0.515211744 0.526324163 0.502691561 0.365251509 0.262797305 0.371764828 0.342698864 0.218235465 0.446216652 0.955880816 0.3623119 0.79177774 0.979628282 0.770173183 0.651407785 0.887061143 1.178461695 1.018836055 0.705644341 1.139435684 0.875271821 2.248159417 0.944928792 1.66709188 1.78433225 1.194809107 3.062888808 0.656695035 1.446031758 1.809409651 1.357217882 1.872852377 3.676033058 4.399750111 1.647286543 1.614718703 1.529439376 3.05864398 Betaine 2.762085302 2.64256753 4.149241502 3.709254935 4.90046906 0.968988178 3.404182364 3.188908926 3.556201345 3.127947543 3.550710524 11.23960765 9.249319365 9.876976117 11.86039045 10.42193921 10.8421722 11.83616059 4.81792169 3.756710951 4.061710656 1.474446484 0.848929368 1.377051783 4.443875723 4.212984181 4.825606915 3.343408685 2.475571386 5.365313803 5.270112295 4.755194739 6.495745375 4.074964713 0.913590006 1.305202983 3.90842098 0.866427798 1.131870304 6.727744982 2.930740631 3.653552895 5.755888914 2.714055316 5.020590665 Cystathionine 0.28914911 0.299595926 0.302618713 0.338303845 0.277728225 0.140027193 0.160111351 0.254433134 0.188389581 0.25868337 0.173489447 0.504699411 0.810300858 0.365388299 0.347800829 0.34232548 0.292555653 0.333031407 2.210252146 2.346558078 2.530136883 0.518589149 1.955414007 2.420951124 1.783283001 1.44030634 1.142511996 0.719214097 1.912233518 1.462405913 0.998046555 1.135290067 0.641682773 0.948821162 1.33140759 1.544754152 2.228791334 1.67385848 1.897008783 1.414876033 1.331934277 2.196382058 2.284277811 1.66393857 1.582927091 Cysteine 0.438094324 0.379684213 0.376261623 0.469416138 0.393390022 0.352868527 0.592063301 1.049869304 0.466532677 1.391740543 0.819657318 0.37410442 0.556139504 0.66035095 0.656999587 0.833841939 0.626009392 0.448511484 1.292523662 1.215080304 1.311351433 1.464617401 0.871476852 1.639669606 1.90305574 1.119213757 1.675013975 0.719408602 1.796969917 1.406224617 0.930646998 0.897236767 1.396119381 0.889225783 0.615211146 0.945591727 2.414448841 0.717798259 0.959503562 1.030932704 0.58469246 0.723416109 0.887515434 0.600883422 0.447760253 Formate 0.36867797 0.503016716 0.412351525 0.211031066 0.123706821 0.549186652 0.33896532 0.522375992 0.385794285 0.479478097 0.328706279 0.673066491 0.958489851 0.361557615 0.504502301 0.397119258 0.563915947 0.447690535 6.449778669 8.063947404 6.205853437 6.747203542 4.993521743 7.951216592 4.137789835 1.382271025 3.718510015 8.602430792 0.377981537 4.959522391 4.920548488 4.283358153 7.442054268 3.656228763 0.487199569 0.377724586 0.492983768 1.224673299 0.618598901 5.373317591 4.769731854 7.393548128 7.412561652 7.819307705 6.136838056 Fucose 0 0 0 0 0 0 0 0 0 0 0 0.102466839 0.111141744 0.530697037 0.417360994 0.481751231 0.580931939 0.586704467 0.259849837 0.345784613 0.191787038 1.555347399 1.270782854 0.408567223 0 0 0 0 0 0.125900255 0 0.182543114 0.604432842 0 0.306370501 0.336945884 0.226213758 0.29742959 0.266625455 0.350413223 0.548907341 0.170012837 0.314143626 0.353248441 0.589025459 Fumarate 0 0 0 0 0 0 0 0 0 0 0 0.051434335 0.060309474 0.038306838 0.032486891 0.021157993 0.055824395 0.086199584 0.052581379 0.062559716 0.043560463 0.094342397 0.037965985 0.056154406 0 0 0 0 0 0 0 0 0 0 0.141670021 0.090092482 0.050169585 0.046663423 0.114238217 0.023612751 0.101290084 0.020677237 0.015349037 0.023770551 0.031532412 Glutamate 5.477721635 7.373311746 5.715616442 7.921201796 7.977049528 6.967053002 7.215181229 8.10010296 9.158173006 7.239665673 7.035358515 11.87932219 7.067839542 8.097770837 5.936310407 8.699461556 10.20720702 7.792442349 10.31940131 9.068599572 11.73803222 15.06059168 21.91590617 13.20331278 5.772636536 5.590916117 4.26901967 2.782262195 6.341055648 4.904017978 8.879986901 11.52690376 5.827957529 10.12232736 5.043888646 7.014695506 5.989106891 5.770406864 6.554391593 10.15442739 11.93767324 6.260320669 3.952547599 6.555256 8.788083271 Glutamine 1.892581191 3.146795085 6.934504142 4.647091781 2.423650972 0.58671394 0.646983528 0.721132688 0.944997136 0.913996785 0.822870086 1.699744034 3.07104456 2.041459785 2.258029995 2.416351331 2.363133211 3.325662026 4.796522292 4.000978206 2.056114346 6.449810769 5.283240339 3.97564083 3.929979014 2.789220618 6.245287054 7.045419476 4.875338782 2.095968484 5.150544718 3.902793123 4.029619217 3.19619426 2.483729743 3.440584482 2.13866633 3.634006439 2.90099633 2.225265643 2.093126224 1.945096192 1.003485937 1.942264641 1.410129472 Glycine 2.73431876 3.056674139 2.121622973 3.377492485 2.571842649 3.238128845 2.735114512 2.805109951 2.749082579 2.926230547 2.512785811 1.287465694 1.681772754 1.138891754 1.072831787 1.096689317 1.343964846 1.114847947 1.373229964 1.275649484 1.77690388 1.415976041 1.669923065 1.703827479 1.843425296 1.836790593 1.636747664 2.02888008 4.087704178 2.570125088 3.256502915 3.871301767 2.885413791 4.748810706 1.309030992 1.63181194 1.988157575 1.627251894 2.164748077 5.165053129 5.589756964 4.580295168 4.305575452 4.776376285 5.906020799 Histidine 0.03119451 0.059504041 0 0 0 0 0 0 0 0 0 0.1084943 0.23348382 0.113741841 0.084848114 0.126134191 0.066869863 0.058013688 0.072146543 0.081043269 0.082583377 0.203638441 0.029013307 0.054853029 0 0 0 0 0 0.118454541 0.053310384 0.152119262 0.070483697 0.070573475 0.167170624 0.170606711 0.332861679 0.178184935 0.231678724 0.042975207 0.071570239 0.054277747 0.080497172 0.06409022 0.068740659 Homocysteine 0.46328989 0.39144664 0.202639928 0 0 0.015683046 0.361049645 0.693089776 0.712062236 0.58874147 0.060440189 0.142649913 0.249853534 0.17238077 0.217088869 0.324693819 0.152546876 0.162000487 0.973978332 1.279061832 1.134387053 0.6724101 1.019859194 1.503936014 1.652761427 0.36692421 1.525775362 2.4214557 1.911714312 1.212297612 0.852585363 1.491836266 1.243505108 1.123947932 0.874285656 0.9241592 0.890435033 0.783502178 0.537358194 0.722550177 1.101453846 0.93248595 1.315583025 0.825048745 0.636954726 Isocitrate 0.902412604 0.974551644 0.46673023 0.865454897 0.909204324 0.349367847 0.706117213 0.49433308 0.686077466 0.780185841 0.051404281 1.850832392 2.37705483 1.135650406 0.98263289 1.124899974 1.112905585 1.29408835 3.700261684 4.536148141 2.482946381 2.934443376 2.201612643 2.876107634 5.318370272 2.724134284 4.254688561 2.390788769 0.975586962 4.015270482 3.988378336 3.46778541 2.900374005 2.891944169 1.121082097 3.101552246 2.75091552 2.41206133 3.029505622 2.613459268 2.292067228 2.34657921 3.997912531 2.110463857 2.432410275 Isoleucine 2.185843863 1.387274438 2.253058497 1.296760303 2.338536948 3.306602142 1.817307427 2.9541263 2.540674119 2.624055285 0.571671824 0.060676442 0.064617293 0.261665169 1.083915549 0.099551071 0.226879894 1.055466011 0.585732104 0.319623277 0.215382288 0.448945474 0.426910091 0.524194545 0.730664892 0.589844905 0.741315986 1.081122786 3.577844467 1.336505659 1.887187611 0.813437735 3.694972263 0.613727848 1.122971031 3.709723919 0.839063781 4.781039986 5.023070411 0.656434475 1.088110242 1.804088924 1.051238497 1.397046434 1.012190431 Lactate 1.091465045 1.121927931 0.886397277 1.183423538 1.070104807 1.971582881 2.807615024 2.853212756 3.003229536 2.298399739 2.623626291 1.416855192 1.376779129 2.046763809 2.433459204 2.06371811 1.72697393 1.8895496 2.047616718 2.097456663 2.295696892 1.918099375 2.409679502 3.727793633 0.753698111 0.909581522 1.401822527 0.731597572 1.585134111 2.247590296 1.821311207 1.93591776 2.989633274 1.781065398 1.025618299 1.445462753 1.407752553 1.725125724 1.537725761 2.506257379 3.596707769 2.592695766 1.86848945 2.581060588 2.799447552 Leucine 4.09607909 3.347621222 4.088888455 3.346776372 4.483177155 6.505243318 4.24527548 5.877139295 4.123093566 5.252112892 4.62096371 0.45045226 0.571647655 1.314219204 2.175857272 0.646132563 0.909907785 1.919924692 0.460392771 0.65090541 0.484307646 0.402152317 0.121607205 0.4568483 0.759584378 1.572919746 0.75662251 1.289437479 1.076312811 3.140737532 2.120991725 1.821161124 2.196139461 1.808249255 1.755545836 1.471447322 3.116522617 2.206537654 1.574552097 2.040141677 2.494647395 3.818683607 3.146211517 3.692258624 2.804492738 Lysine 2.152249775 2.056348943 2.428752923 3.211682361 3.272109534 3.096141271 3.463751923 2.509533567 2.580977027 2.369774469 2.999319295 2.465231595 2.228435055 2.768111031 2.110883491 2.138042343 2.321339547 3.079377502 2.104477977 2.350254789 2.161990471 5.434558888 3.669520195 3.277972767 2.414137278 2.100932633 1.94925587 1.345195536 2.755942306 1.894595765 2.948825839 2.930297353 2.655187128 2.047153537 6.578574553 7.988737491 2.987343445 6.391695388 6.523343302 2.92892562 2.922855774 3.901679738 2.232091085 3.050152854 3.203062428 Methionine 2.146593628 2.591539356 2.39083414 2.659361162 2.785210681 3.38851805 2.541731382 2.74042703 2.744575016 2.699298927 2.695311167 0.317446285 0.294224076 1.198414686 1.380119552 1.161248322 1.23351016 1.294362 0.545378953 0.618772465 0.511532935 0.447685335 0.565262119 0.659798 1.935046322 1.741059443 1.856741436 2.218262968 1.641208295 2.44794769 2.092432591 1.987157932 2.173749341 1.662920174 3.169993854 1.743431784 2.172012581 0.511024163 1.914830223 1.582054309 1.619428287 2.323030134 1.569012682 2.296114869 1.850321946 N-Acetylglucosamine 0 0 0 0 0 0 0 0 0 0 0 1.043554434 1.100647896 0.313232066 0.751402669 0.247385767 0.2474782 0.601481538 0.953801756 0.773181218 0.932012403 1.284249524 0.971033943 0.73696964 0 0 0 0 0 0 0 0 0 0 0.791826439 0.593472373 0.110853754 0.729961442 0.206756554 0.165289256 0.253528473 0.117458193 0.141893321 0.189863515 0.297665971 NAD+ 0 0 0 0 0 0 0 0 0 0 0 0.039781243 0.057294 0.066594964 0.238109798 0.150276003 0.161204135 0.151601807 0.267186774 0.223793166 0.226272404 0.681231072 0.502261795 0.318772229 0 0 0 0 0 0 0 0 0 0 0.109921406 0.1619768 0.07870917 0.0888367 0.115491287 0.106257379 0.14738617 0.110565781 0.149397294 0.098392028 0.200546141 Phenylalanine 3.965302107 3.605875678 3.348557745 3.568614959 3.551470082 4.459446024 3.620376276 3.48816978 3.91375708 2.994670242 2.761172901 2.449560196 1.999259055 1.721155688 1.607909985 1.535853305 1.665179011 1.474697002 0.91589425 0.956310569 1.136504575 0.883693383 0.652633621 0.894371155 1.999283411 1.452510027 1.765127386 2.281088034 1.780355344 2.206638869 1.6994589 1.632212988 1.83819875 1.667625072 8.517928159 5.200517415 3.778640975 6.026743086 5.691444038 2.00661157 2.047030138 2.926403396 3.216475998 2.906325975 2.665119476 Proline 9.487930124 8.954493247 7.066061592 8.733756723 9.547111778 7.928199656 8.933690363 10.59755965 9.762053751 9.865588708 8.825673225 17.81998786 18.71273736 15.46417574 14.38901714 14.86647407 15.73232949 14.60467229 15.63562327 13.6320465 12.21719731 6.877249873 6.157452731 8.410602576 4.563904387 4.956053165 4.857945699 6.67923168 4.598083094 4.257256187 3.079436281 3.563860733 3.970481187 4.68137383 3.918302168 3.648840368 3.828510144 2.115313787 2.301541555 3.175914994 3.99822894 3.718456444 4.85541207 3.39497629 3.484331544 Pyroglutamate 1.236810893 0.831153825 0.720213028 0 0 0.877970502 0.691878635 0.821841539 0.941947903 1.160406369 0.875278356 0.956357163 0.961936106 2.71713347 2.345935699 2.094641331 2.521053559 2.898495202 2.260999291 2.401440011 1.853437193 1.786036821 1.636350524 2.605811688 2.605057071 1.876655973 2.262214269 2.054878895 2.013997778 2.013727189 1.859390053 2.175572315 1.120610457 1.611166292 1.839458079 2.013424728 1.95961799 1.883133418 2.679899086 1.758205431 1.534514444 1.667676597 2.374666585 1.399754471 1.463734573 Pyruvate 0.525336112 0.755562936 0.735697547 0.968410754 0.84227905 0.564169562 0.727910954 0.559834772 0.657838916 0.842355233 0.968649413 1.349347628 1.438380949 0.900505356 0.683753497 1.128968819 1.15469925 0.858164742 2.192521216 1.798591838 1.748771081 2.384518774 2.331011992 1.859341998 0.575574551 0.651405729 0.852288288 0.847652132 0.68067829 0.536091406 0.987384478 1.045619766 0.902833906 0.817084009 0.39565894 0.597360575 0.416077099 0.649195639 0.720584877 0.778276269 1.151189097 0.504582018 0.371446698 0.392063645 0.626864354 Serine 0.751753406 0.854678678 2.108942737 0.747709801 0.781183505 0.884691807 1.228149958 0.704757265 0.904031351 1.329571151 1.031900774 1.807434672 1.858393356 0.430804591 0.380669918 2.045815193 0.394651605 0.362859199 1.392795128 1.453660312 1.517053619 1.487131882 1.536876328 1.854071422 3.753646926 4.059760103 1.783660285 3.046205275 2.483359467 3.34854064 2.192579956 2.151019733 1.192299003 1.467928276 1.743703676 1.233603168 1.189349628 1.994591363 2.289010854 1.659976387 1.345884408 1.612250114 1.377661352 1.391329466 1.27075621 Succinate 4.113561727 3.321674693 2.726738473 3.321606225 3.976573822 2.530011328 2.514271268 2.097691679 2.87834355 2.624722339 3.726609546 5.786764499 5.464469104 4.684042255 4.060861323 4.948257856 4.863588464 4.548601514 7.289246497 6.662041039 7.093700371 6.436033251 5.134692206 5.249363301 1.700619338 2.260394152 1.533953848 1.499697221 1.841621582 3.958412303 3.961723144 5.506183515 5.814001355 9.631972398 2.082186048 1.606870548 2.385909256 0.247242254 0.320855541 2.519952774 4.793386425 1.35809241 4.006780864 2.47965963 3.380274584 Tyrosine 2.379695459 2.150448356 1.609170737 1.858040369 1.657857948 2.176022584 5.785802395 2.049179489 1.617021615 1.584919253 1.692325301 1.758009491 1.393148844 1.190163983 1.158444298 1.28087236 1.229032268 1.023722673 0.753870234 0.698962646 0.948347576 0.58067199 0.543626481 0.77165133 1.409377079 1.749466428 1.805644656 1.765131505 1.709224203 1.706760708 1.760765842 1.464614925 1.766108587 1.434993988 3.000861644 2.493949579 2.550237179 2.943887944 2.905242845 1.428099174 1.548464576 2.158760974 2.002878797 1.906157475 1.831402499 UDP-glucose 0 0 0 0 0 0 0 0 0 0 0 0.291327287 0.142588827 0.391908417 0.383345309 0.293770599 0.32479648 0.395423486 0.223165154 0.240854907 0.248052636 1.087919889 0.79952385 0.319748262 0 0 0 0 0 0.157375318 0 0.235384541 0.052410954 0.245700246 0.260018977 0.398113938 0.154414172 0.183016105 0.231121804 0.234238489 0.273543879 0.127509628 0.126544284 0.179633151 0.488752389 Uracil 2.988502595 1.708146518 1.749750663 1.365587147 1.952492383 1.922713391 2.353869333 2.404116781 2.512568144 2.503318591 5.073763135 0.668646353 1.213081986 1.966908786 2.343642507 1.921579797 1.717719618 1.894475291 0.472620998 0.510146049 0.503062845 0.2105272 0.215527425 0.234443017 1.7469417 2.647929034 1.535754615 2.487003834 0.711830614 1.89561109 1.149981151 1.038680993 1.442606491 1.565162842 8.095242939 2.38289874 4.077855986 3.190448151 2.682474841 0.321605667 0.468845718 0.552254537 0.553588605 0.498278892 0.449021549 Uridine 0.833853242 1.782699546 1.593930068 2.256638804 1.440642296 3.400700416 1.088524724 1.392115643 1.313556626 1.650423913 2.074845436 0.405045387 0.414843023 2.928705082 1.782574796 2.736162537 1.734138558 0.941901481 0.298368754 0.282940534 0.795583453 0.363676077 0.232769619 0.449755797 1.301888724 1.743771373 1.416378731 1.445949048 1.193653233 1.209251638 0.572705845 0.70188361 1.014684104 0.999006744 0.452326948 1.336024095 3.890696396 2.993677419 2.787802338 1.506965762 1.019572641 1.006005014 0.883081268 1.550200997 1.759508599 Valine 4.284960133 3.612621776 4.778498221 4.888412347 5.021494206 6.69974109 4.900685922 5.235836794 4.775496892 5.226364625 6.018517589 0.347985422 0.302839715 1.595921795 2.170888688 0.579132251 1.168132928 2.263902077 0.58389787 0.725977069 0.212357256 0.470367835 0.440173317 0.516321216 0.755233659 1.702007642 0.718581295 1.866209191 1.133425406 3.290667136 3.206619627 2.449920738 1.412786466 2.261487793 5.276082177 3.605026971 3.584571801 4.277688859 4.311465869 2.92798111 3.550611683 4.97919353 4.328769553 4.971354982 4.274533793 NMR_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name CAS # PubChem ID KEGG ID Acetate 71-50-1 176 C00033 Acetoacetate 541-50-4 96 C00164 Adenine 73-24-5 190 C00147 Adenosine 58-61-7 60961 C00212 Alanine 56-41-7 5950 C00041 AMP 61-19-8 6083 C00020 Aspartate 56-84-8 5960 C00049 Betaine 107-43-7 247 C00719 Cystathionine 56-88-2 439258 C02291 Cysteine 54-90-4 5862 C00097 Formate 141-53-7 284 C00058 Fucose 2438-80-4 25310 C01019 Fumarate 142-42-7 444972 C00122 Glutamate 56-86-0 33032 C00025 Glutamine 56-85-9 5961 C00064 Glycine 56-40-6 750 C00037 Histidine 71-00-1 6274 C00135 Homocysteine 6027-13-0 778 C00155 Isocitrate 320-77-4 1198 C00311 Isoleucine 73-32-5 6306 C00407 Lactate 50-21-5 61503 C00186 Leucine 61-90-5 6106 C00123 Lysine 56-87-1 5962 C00047 Methionine 59-51-8 6137 C00073 N-Acetylglucosamine 7512-17-6 439174 C00140 NAD+ 53-84-9 5893 C00003 Phenylalanine 63-91-2 6140 C00079 Proline 609-36-9 145742 C00148 Pyroglutamate 28874-51-3 7405 C01879 Pyruvate 127-17-3 1060 C00022 Serine 302-84-1 5951 C00716 Succinate 110-15-6 1110 C00042 Tyrosine 60-18-4 6057 C00082 UDP-glucose 133-89-1 53477679 C00029 Uracil 66-22-8 1174 C00106 Uridine 58-96-8 6029 C00299 Valine 72-18-4 6287 C00183 METABOLITES_END #END