#METABOLOMICS WORKBENCH juliehaines_20220622_115233 DATATRACK_ID:3314 STUDY_ID:ST002213 ANALYSIS_ID:AN003620 PROJECT_ID:PR001414 VERSION 1 CREATED_ON July 8, 2022, 5:01 pm #PROJECT PR:PROJECT_TITLE Metabolic changes in Alzheimer patient-derived induced neurons and the effects PR:PROJECT_TITLE of PKM2 modulation and hypoxia on their metabolic landscape PR:PROJECT_SUMMARY We have obtained fibroblast cultures from old adult human non-demented control PR:PROJECT_SUMMARY donors and Alzheimer patients (AD). The fibroblasts were reprogrammed into PR:PROJECT_SUMMARY directly induced neurons (iNs) to serve as an adult-like and age-equivalent PR:PROJECT_SUMMARY model for aging and neurodegeneration. Metabolomic landscape and glucose flux in PR:PROJECT_SUMMARY control versus AD were assessed. Additionally, their response to PKM2 modulation PR:PROJECT_SUMMARY (shikonin 10 µM or PKM2 overexpression) and hypoxia (CoDo treatment) were PR:PROJECT_SUMMARY assessed. PR:INSTITUTE University of Colorado Denver PR:LABORATORY Lab of Angelo D'Alessandro in collaboration with lab of Jerome Mertens (Univ of PR:LABORATORY Innsbruck) PR:LAST_NAME Haines PR:FIRST_NAME Julie PR:ADDRESS 12801 E 17th Ave, Room 1303, Aurora, Colorado, 80045, USA PR:EMAIL julie.haines@cuanschutz.edu PR:PHONE 3037243339 #STUDY ST:STUDY_TITLE Metabolic changes in Alzheimer patient-derived induced neurons and the effects ST:STUDY_TITLE of PKM2 modulation and hypoxia on their metabolic landscape ST:STUDY_SUMMARY We have obtained fibroblast cultures from old adult human non-demented control ST:STUDY_SUMMARY donors and Alzheimer patients (AD). The fibroblasts were reprogrammed into ST:STUDY_SUMMARY directly induced neurons (iNs) to serve as an adult-like and age-equivalent ST:STUDY_SUMMARY model for aging and neurodegeneration. Metabolomic landscape and glucose flux in ST:STUDY_SUMMARY control versus AD were assessed. Additionally, their response to PKM2 modulation ST:STUDY_SUMMARY (shikonin 10 µM or PKM2 overexpression) and hypoxia (CoDo treatment) were ST:STUDY_SUMMARY assessed. ST:INSTITUTE University of Colorado Denver ST:LAST_NAME Haines ST:FIRST_NAME Julie ST:ADDRESS 12801 E 17th Ave, Room 1303, Aurora, Colorado, 80045, USA ST:EMAIL julie.haines@cuanschutz.edu ST:PHONE 3037243339 #SUBJECT SU:SUBJECT_TYPE Human SU:SUBJECT_SPECIES Homo sapiens SU:TAXONOMY_ID 9606 SU:AGE_OR_AGE_RANGE 50-90 yrs #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS - Control3 Condition:Non-demented control RAW_FILE_NAME=3 SUBJECT_SAMPLE_FACTORS - AD6 Condition:Alzheimer patient RAW_FILE_NAME=6 SUBJECT_SAMPLE_FACTORS - AD7 Condition:Alzheimer patient RAW_FILE_NAME=7 SUBJECT_SAMPLE_FACTORS - Control9 Condition:Non-demented control RAW_FILE_NAME=9 SUBJECT_SAMPLE_FACTORS - AD2 Condition:Alzheimer patient RAW_FILE_NAME=10 SUBJECT_SAMPLE_FACTORS - Control2 Condition:Non-demented control RAW_FILE_NAME=11 SUBJECT_SAMPLE_FACTORS - AD8 Condition:Alzheimer patient RAW_FILE_NAME=14 SUBJECT_SAMPLE_FACTORS - Control10 Condition:Non-demented control RAW_FILE_NAME=15 SUBJECT_SAMPLE_FACTORS - AD11 Condition:Alzheimer patient RAW_FILE_NAME=17 SUBJECT_SAMPLE_FACTORS - Control11 Condition:Non-demented control RAW_FILE_NAME=18 SUBJECT_SAMPLE_FACTORS - AD10 Condition:Alzheimer patient RAW_FILE_NAME=19 SUBJECT_SAMPLE_FACTORS - AD1 Condition:Alzheimer patient RAW_FILE_NAME=20 SUBJECT_SAMPLE_FACTORS - Control7 Condition:Non-demented control RAW_FILE_NAME=22 SUBJECT_SAMPLE_FACTORS - AD3 Condition:Alzheimer patient RAW_FILE_NAME=23 SUBJECT_SAMPLE_FACTORS - Control8 Condition:Non-demented control RAW_FILE_NAME=24 SUBJECT_SAMPLE_FACTORS - AD5 Condition:Alzheimer patient RAW_FILE_NAME=25 SUBJECT_SAMPLE_FACTORS - Control6 Condition:Non-demented control RAW_FILE_NAME=27 SUBJECT_SAMPLE_FACTORS - Control4 Condition:Non-demented control RAW_FILE_NAME=29 SUBJECT_SAMPLE_FACTORS - Control8 media Condition:non-demented control RAW_FILE_NAME=31 SUBJECT_SAMPLE_FACTORS - Control6 media Condition:non-demented control RAW_FILE_NAME=32 SUBJECT_SAMPLE_FACTORS - AD6 media Condition:Alzheimer patient RAW_FILE_NAME=33 SUBJECT_SAMPLE_FACTORS - AD3 media Condition:Alzheimer patient RAW_FILE_NAME=35 SUBJECT_SAMPLE_FACTORS - AD7 media Condition:Alzheimer patient RAW_FILE_NAME=36 SUBJECT_SAMPLE_FACTORS - Control9 media Condition:non-demented control RAW_FILE_NAME=38 SUBJECT_SAMPLE_FACTORS - AD2 media Condition:Alzheimer patient RAW_FILE_NAME=39 SUBJECT_SAMPLE_FACTORS - Control2 media Condition:non-demented control RAW_FILE_NAME=40 SUBJECT_SAMPLE_FACTORS - Control10 media Condition:non-demented control RAW_FILE_NAME=44 SUBJECT_SAMPLE_FACTORS - AD11 media Condition:Alzheimer patient RAW_FILE_NAME=46 SUBJECT_SAMPLE_FACTORS - Control11 media Condition:non-demented control RAW_FILE_NAME=47 SUBJECT_SAMPLE_FACTORS - AD10 media Condition:Alzheimer patient RAW_FILE_NAME=48 SUBJECT_SAMPLE_FACTORS - AD1 media Condition:Alzheimer patient RAW_FILE_NAME=49 SUBJECT_SAMPLE_FACTORS - Control7 media Condition:non-demented control RAW_FILE_NAME=51 SUBJECT_SAMPLE_FACTORS - AD5 media Condition:Alzheimer patient RAW_FILE_NAME=52 SUBJECT_SAMPLE_FACTORS - AD8 media Condition:Alzheimer patient RAW_FILE_NAME=53 SUBJECT_SAMPLE_FACTORS - Control4 media Condition:non-demented control RAW_FILE_NAME=55 SUBJECT_SAMPLE_FACTORS - Control3 media Condition:non-demented control RAW_FILE_NAME=56 #COLLECTION CO:COLLECTION_SUMMARY For Metabolome, iNs were flow cytometry-isolated 21 days of conversion. iNs were CO:COLLECTION_SUMMARY sorted based on the expression of the PSA-NCAM surface markers using PSA-NCAM-PE CO:COLLECTION_SUMMARY (Miltenyi) and re-plated on Geltrex-coated wells. The following day, iNs were CO:COLLECTION_SUMMARY treated with 2.5 mM DGlucose-C13 for 6 hours and harvested using Tryple. CO:COLLECTION_SUMMARY Supernatant and cell pellets were shock frozen in liquid nitrogen. CO:SAMPLE_TYPE Biopsy #TREATMENT TR:TREATMENT_SUMMARY After two weeks of conversion, cells were treated for 10 days with shikonin (10 TR:TREATMENT_SUMMARY µM, ChemCruz) before FACS sorting. Control iNs were FACS-sorted and plated on TR:TREATMENT_SUMMARY Geltrex-coated wells before transduction with pLVXTP-EGFP-PKM2 or pLVXTP-EGFP. TR:TREATMENT_SUMMARY Around 60 % of all neurons were successfully transduced. Five days after TR:TREATMENT_SUMMARY transduction, iNs were harvested for MS-analysis. Alternatively, cells were TR:TREATMENT_SUMMARY treated with CoDo for 6 hours before harvest. #SAMPLEPREP SP:SAMPLEPREP_SUMMARY Metabolites from frozen cell pellets were extracted at 1e6 cells/mL in cold SP:SAMPLEPREP_SUMMARY 5:3:2 MeOH:acetonitrile:water. Metabolites from supernatant samples (10 uL) were SP:SAMPLEPREP_SUMMARY extracted with 240 uL of the above extraction solution. Samples were vortexed 30 SP:SAMPLEPREP_SUMMARY min at 4 degrees C then supernatants clarified by centrifugation (10 min, 10,000 SP:SAMPLEPREP_SUMMARY g, 4 degrees C). #CHROMATOGRAPHY CH:CHROMATOGRAPHY_SUMMARY Negative C18 media CH:CHROMATOGRAPHY_TYPE Reversed phase CH:INSTRUMENT_NAME Thermo Vanquish CH:COLUMN_NAME Phenomenex kinetex C18 2.1 x 150 mm, 1.7 um #ANALYSIS AN:ANALYSIS_TYPE MS #MS MS:INSTRUMENT_NAME Thermo Q Exactive Orbitrap MS:INSTRUMENT_TYPE Orbitrap MS:MS_TYPE ESI MS:ION_MODE NEGATIVE MS:MS_COMMENTS Resolution 70,000, scan range 65-900 m/z, maximum injection time 200 ms, MS:MS_COMMENTS microscans 2, automatic gain control (AGC) 3 x 10^6 ions, source voltage 4.0 kV, MS:MS_COMMENTS capillary temperature 320 C, and sheath gas 45, auxiliary gas 15, and sweep gas MS:MS_COMMENTS 0 (all nitrogen). Data converted to mzXML using RawConverter. Metabolites were MS:MS_COMMENTS annotated and integrated using Maven in conjunction with the KEGG database. #MS_METABOLITE_DATA MS_METABOLITE_DATA:UNITS peak area MS_METABOLITE_DATA_START Samples Control7 Control4 Control10 Control2 Control3 Control6 Control8 Control9 Control11 AD3 AD5 AD2 AD7 AD8 AD1 AD10 AD11 Factors Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Non-demented control Condition:Alzheimer patient Condition:Alzheimer patient Condition:Alzheimer patient Condition:Alzheimer patient Condition:Alzheimer patient Condition:Alzheimer patient Condition:Alzheimer patient Condition:Alzheimer patient ATP 4724.67 86879.30 2181532.00 94712.52 4707.84 11600.91 6686.72 1413993.00 859528.50 9021.15 500634.80 633389.10 50282.93 8747168.00 3802767.00 765208.90 2605640.00 ADP 2877.61 20400.57 527749.40 884504.00 2169.75 3289.00 2425.85 1461066.00 1665730.00 2680.63 1015092.00 845589.80 75213.41 3581236.00 4136003.00 1617848.00 1560009.00 AMP 32146.60 276508.00 71342.84 821114.80 2014.00 1087.93 24400.17 470518.00 2861932.00 14215.85 1789795.00 510665.70 86200.74 706005.10 1387938.00 808720.20 827794.20 Adenine 4465604.00 120195.20 178379.70 148893.40 4470188.00 4903620.00 4395732.00 177150.20 164455.40 4417254.00 128955.10 145778.70 166784.60 158563.60 119075.90 157372.40 153709.70 GTP 2213.92 5141.90 403155.60 8826.38 0.00 847.75 4520.49 247662.10 113459.90 7634.95 62200.53 26555.81 20572.49 671238.70 360998.90 140719.60 367208.50 GDP 0.00 330.07 141959.90 289427.40 461.94 0.00 413.41 355201.80 385836.40 4423.64 262414.10 180906.70 36827.69 395423.80 604052.00 366356.90 284024.50 Guanosine 3264.73 201702.50 225873.70 326096.60 3664.62 3899.70 5043.40 143687.50 68202.37 3689.37 1028699.00 2686936.00 191097.40 192829.40 112409.80 7615.93 715675.60 Guanine 0.00 80270.91 173221.10 147336.20 35091.25 0.00 39090.05 151406.90 90776.60 0.00 488641.50 487616.20 170237.70 116875.60 151448.20 39008.69 244101.10 dCMP 5989.68 38977.28 108108.20 7441.53 6301.57 8656.90 4798.39 53308.38 30917.79 14629.27 191191.90 37890.05 12486.58 139552.00 102458.10 15761.27 76701.79 Cytidine 5234.14 975546.60 126712.60 231680.20 421.68 8435.04 7294.44 178701.30 339114.40 7217.68 1382990.00 2172466.00 54890.55 716413.70 498061.40 80093.38 1019658.00 UTP 7721.17 18494.35 2995847.00 241394.20 18705.38 11028.80 12536.82 1543917.00 630710.20 25567.46 621600.40 1284078.00 1093146.00 4716570.00 1776092.00 726352.50 4351989.00 UDP 26430.65 102859.20 822499.80 2364006.00 27538.31 4023.90 33448.87 1566445.00 1210276.00 5360.82 850030.00 1511050.00 718821.00 2185427.00 1885976.00 1888122.00 2435614.00 UMP 0.00 304171.80 418670.20 3898052.00 0.00 0.00 0.00 745102.00 1200166.00 0.00 4060899.00 2193598.00 1213144.00 491199.50 818415.50 537777.70 1006839.00 Uracil 40539.67 4755740.00 4104158.00 647560.90 37732.16 42691.41 41161.40 2400021.00 676646.40 60282.61 4997224.00 6429284.00 2977940.00 493615.10 938386.50 325897.30 4363270.00 IDP 98331.23 1981741.00 5690550.00 2047339.00 282131.60 278464.80 190210.30 6821012.00 2669305.00 66818.85 2350071.00 370417.20 1818828.00 4210808.00 4708514.00 3204081.00 3440802.00 IMP 2282.64 16523.16 28409.66 73106.26 826.95 2760.71 3069.29 37768.58 102400.30 7468.01 82662.71 38866.34 5630.49 78366.59 239147.20 4808.63 40201.44 Inosine 0.00 8235768.00 2795627.00 4529444.00 20129.20 8498.86 20365.73 2005184.00 1239227.00 22508.12 10674030.00 29497060.00 1920394.00 1911217.00 1522955.00 165334.20 11103310.00 Xanthine 68453.29 10657900.00 48794.86 52819.34 13063.81 531.46 29132.88 64906.79 149737.20 13700.72 40151.35 474563.20 52547.09 194728.10 39320.66 17685.20 173044.60 3',5'-Cyclic IMP 522886.00 4852802.00 14971150.00 4391310.00 1338993.00 1487048.00 1052680.00 16972670.00 6092638.00 432694.60 10532760.00 1049604.00 3686786.00 13576010.00 14709430.00 6958210.00 11212050.00 5-6-Dihydrothymine 618612.20 926198.70 622182.70 146911.40 354054.90 369423.00 347851.40 546480.80 346922.30 491050.20 1298789.00 1800526.00 133646.90 941205.50 774779.10 83776.87 1496500.00 UDP-glucose 555.49 411495.80 2658712.00 816329.30 0.00 0.00 0.00 1581823.00 805751.50 1398.26 2249061.00 3537636.00 984061.40 2333747.00 1996340.00 432658.40 2723931.00 ADP-D-ribose 24666.85 53528.89 84985.98 31575.49 22460.69 24173.53 24333.29 115820.20 53642.19 37420.80 1326169.00 497013.10 45897.11 182058.00 145771.10 65445.45 105079.30 Phosphate 2321938.00 188918500.00 173013500.00 228032700.00 6298690.00 4948452.00 4526708.00 210416500.00 201345000.00 1699837.00 156886500.00 101962200.00 192088900.00 163415200.00 153647400.00 224720400.00 147658500.00 Diphosphate 35654.87 32561260.00 24107030.00 42369580.00 39316.80 40534.33 29938.69 29286970.00 36670150.00 41379.86 20497480.00 18084470.00 33104090.00 22400820.00 24017040.00 45827080.00 20004320.00 D-Glucose 7850064.00 1953046.00 242753.20 622589.90 8751523.00 8563389.00 8413130.00 243664.10 134091.30 8001726.00 644854.80 6634106.00 399738.00 7521910.00 2191377.00 777479.20 834253.90 D-Glucose 6-phosphate 2217.96 1449692.00 27827490.00 3762768.00 0.00 752.46 1729.91 22601550.00 8448697.00 0.00 12784830.00 10416160.00 3145034.00 11314850.00 29298900.00 4027789.00 9384139.00 D-Fructose 1-6-bisphosphate 3153.59 1199962.00 4214336.00 347850.30 812.30 1385.47 10539.49 402275.90 219162.40 2172.27 89902140.00 12145050.00 3811272.00 2768534.00 356511.00 130340.40 18989410.00 D-Glyceraldehyde 3-phosphate/Glycerone phosphate 11991560.00 1200224.00 2424290.00 286652.00 12576220.00 10400210.00 11403430.00 302374.00 552861.90 9820090.00 17924580.00 3420866.00 4183004.00 1388501.00 626981.20 472896.10 3892701.00 2-3-Bisphosphoglycerate 2517.90 622186.60 3212280.00 100973.60 2347.28 2789.46 4202.91 1313516.00 616524.10 2608.29 1430875.00 127545.90 543439.10 7746742.00 1351308.00 155422.30 3290171.00 2/3-Phospho-D-glycerate 5692.41 53888760.00 85298720.00 6603740.00 3963.71 3036.73 4447.99 48592320.00 36076220.00 0.00 24818070.00 61616310.00 68030210.00 58961190.00 40502990.00 4915360.00 120301400.00 Phosphoenolpyruvate 380.20 21935410.00 16423520.00 594743.60 657.10 626.08 978.20 10829010.00 9878268.00 407.85 2566918.00 2270060.00 12913980.00 7460154.00 10257370.00 2069626.00 7582788.00 Pyruvate 5403956.00 237126.40 665027.20 241791.60 4810497.00 5415480.00 3975521.00 513524.10 262530.50 5957128.00 2483102.00 1060572.00 586274.40 2357812.00 488193.20 66285.73 1678189.00 Lactate 5671524.00 9384249.00 18996780.00 5279294.00 5098890.00 5964514.00 6418762.00 9710912.00 3418540.00 5878942.00 40041220.00 93889750.00 9477807.00 41708330.00 13390280.00 2436823.00 64376210.00 Mannitol 1077923.00 1388623.00 860619.80 389728.40 1164167.00 1264142.00 1231972.00 754071.50 447355.40 1311609.00 1622906.00 2923740.00 412685.80 1505823.00 965530.60 120854.30 1983656.00 D-Ribose 517544.00 271489.40 282858.20 103458.20 574425.40 644215.10 661876.00 224554.10 106371.00 590328.20 345871.90 420735.00 79822.62 247766.90 227127.80 43075.17 379088.50 Citrate 1662569.00 8086326.00 1046702.00 2009444.00 2219489.00 1971079.00 2627811.00 501161.60 400968.10 1727282.00 551315.30 5204388.00 1165072.00 1081364.00 444364.60 286060.90 3451066.00 2-Oxoglutarate 190928.60 23727.64 214842.80 70342.88 184324.00 133556.40 172541.30 308046.80 60617.61 144340.70 24365.22 33079.84 38614.19 377763.30 639647.90 146499.00 132053.60 Succinate 399829.10 487327.40 378571.20 608720.40 204172.60 297982.10 197814.90 626029.80 415029.00 251465.60 335635.50 818489.30 538086.40 1256676.00 961203.20 279869.70 467147.20 Fumarate 267115.00 977581.10 3064962.00 555941.20 305357.10 277877.80 314257.30 1831375.00 704632.50 284650.20 1568190.00 1899914.00 789115.70 4270648.00 2672923.00 248949.30 4340058.00 Malate 2471288.00 7556742.00 26352270.00 3225373.00 2505742.00 2569724.00 2590494.00 16597480.00 5613238.00 2526195.00 12868200.00 14866660.00 6438414.00 37266380.00 24367980.00 1678048.00 39470200.00 2-Hydroxyglutarate/Citramalate 157819.70 211137.00 536491.10 337245.70 146555.20 138912.20 116338.60 320110.70 172204.90 125098.60 328473.50 557214.80 524103.30 477161.70 335929.10 230904.30 608003.80 6-Phospho-D-gluconate 6354.01 18483890.00 6805660.00 11492560.00 8059.60 3630.76 6043.92 3506125.00 13768770.00 13832.44 11523040.00 45837120.00 3694652.00 37485440.00 9964363.00 1167362.00 23272660.00 D-Erythrose 4-phosphate 749.28 165373.40 191768.20 76747.04 861.63 1554.63 7526.48 46229.32 83246.62 1232.90 423661.80 676124.80 127816.50 468632.00 91303.31 12220.61 504505.30 Sedoheptulose 1-phosphate 26624.08 313093.40 435472.30 185905.20 6205.21 6611.06 8483.86 299381.50 381935.40 25052.73 252635.90 1008988.00 252474.90 1603377.00 312908.60 244503.30 718998.00 alpha-D-Ribose 1-phosphate 10284690.00 10135300.00 7895898.00 4353677.00 9991174.00 10107890.00 11074050.00 3661227.00 5217838.00 11296060.00 6887698.00 10220460.00 11133710.00 8667255.00 3940641.00 2020335.00 10500620.00 5-Phospho-alpha-D-ribose 1-diphosphate 15365.24 66709.73 1149471.00 50138.78 19814.08 24354.74 24983.09 478908.80 313183.10 23127.46 206707.00 11291.05 143969.50 526473.60 388634.60 276421.10 329154.50 Glutathione 16413.59 18484100.00 28821280.00 22107990.00 10041.72 14050.57 15870.22 34402480.00 22329030.00 12937.22 47363070.00 42264240.00 16637840.00 52626190.00 28046170.00 11454540.00 54570960.00 Glutathione disulfide 0.00 20784.46 28000.91 70257.43 0.00 0.00 0.00 32827.11 7625.52 0.00 104183.90 86538.86 109337.30 25349.72 9131.71 11531.14 22440.63 5-Oxoproline 3736924.00 5712888.00 8096504.00 4992468.00 2900519.00 2736757.00 1724973.00 5588787.00 6399560.00 2828335.00 11242460.00 10205810.00 4221068.00 8791035.00 7672808.00 3119780.00 11305170.00 S-Glutathionyl-L-cysteine 39304.01 89996.21 108743.80 687043.70 72404.32 72427.70 63219.79 86128.54 64470.86 64266.93 172483.90 231954.90 161412.10 131678.40 68376.91 10911.52 135304.20 Ascorbate 5554782.00 49955.05 76936.66 31363.24 6091482.00 5878468.00 5878620.00 53200.64 25721.69 6043858.00 45752.30 110728.90 36494.60 55192.45 17555.85 19544.00 148159.60 (5-L-Glutamyl)-L-glutamine 2484.05 361944.30 295448.10 440765.70 0.00 0.00 0.00 241661.10 133781.20 0.00 419529.20 802873.90 232354.40 315470.40 227135.50 15547.86 586261.20 Cystathionine 3915.37 53695.11 101683.60 127135.90 4447.49 3062.27 540.17 123236.90 230730.30 3847.86 249140.70 365943.00 0.00 212653.30 755566.50 72765.04 370826.10 Dimethylglycine 35258.65 363786.70 505265.50 364572.30 24555.08 20259.20 20735.60 363640.90 167993.60 18017.25 701191.90 917849.90 501030.10 625321.50 414863.00 137353.70 554106.90 S-Adenosyl-L-homocysteine 2339076.00 89319.21 11297.73 14462.84 4301073.00 4990428.00 4009472.00 1492.92 110431.20 5284256.00 1229.55 1548.01 19036.61 43354.59 1392.81 1704.57 5724.22 3-Phosphonopyruvate 380.20 21935410.00 16423520.00 594743.60 657.10 626.08 978.20 10829010.00 9878268.00 407.85 2566918.00 2270060.00 12913980.00 7460154.00 10257370.00 2069626.00 7582788.00 N-Glycoloyl-neuraminate 2243.89 54581.13 39378.62 48064.75 3504.79 2022.38 4098.00 16527.93 21832.61 3714.73 18484.87 100184.90 27777.99 61435.75 27267.82 10475.69 47405.66 UDP-N-acetyl-D-glucosamine 2815.78 346215.90 1598181.00 1185384.00 0.00 348.10 0.00 1360940.00 964308.40 0.00 2820169.00 4728224.00 864569.00 2025344.00 1046384.00 337472.20 4924614.00 CMP-N-acetylneuraminate 5280.33 46296.17 67953.85 95766.66 0.00 22169.01 0.00 53223.52 64300.91 27427.58 96737.73 149367.90 84861.20 64562.08 62527.30 32587.03 108293.70 Glycolate 2118677.00 853181.70 502928.50 775751.00 1871277.00 1902104.00 1856390.00 649149.40 595285.80 1868391.00 522723.20 566198.70 545299.20 364530.70 741332.80 695014.30 312344.90 Carnosine 3255.92 169339.10 148209.50 238156.10 0.00 0.00 0.00 203346.00 213492.60 0.00 223958.50 208752.50 24601.97 200201.70 472395.40 137295.00 300342.30 trans-4-Hydroxy-L-proline 14894.06 423465.00 397088.30 215312.90 13717.73 15065.79 6368.10 254284.70 244043.10 27807.02 620744.00 525381.20 150949.00 411136.20 487395.80 106244.20 672856.20 Pantothenol 2490332.00 4856846.00 571772.70 108171.90 2431628.00 2812342.00 2623236.00 2446322.00 3038405.00 2974447.00 6261546.00 5888544.00 611740.70 2489004.00 7983390.00 1934520.00 4419612.00 5-6-Dihydrouracil 114204.40 672256.60 215244.70 138294.80 124251.50 145291.20 156507.40 214865.50 116073.80 182952.00 679264.20 1144058.00 94193.63 459138.50 309571.00 49435.08 671793.90 Pantetheine 5891.07 565846.60 916984.10 412103.60 6045.75 3194.66 6442.48 428582.80 182101.60 8357.61 395848.50 496630.20 964988.20 954892.30 190383.70 113517.40 512392.20 Indole-3-acetaldehyde 3006055.00 2949580.00 2926293.00 1957743.00 3673434.00 3503283.00 3356863.00 3007881.00 1032102.00 3506842.00 3100617.00 3786466.00 2629169.00 2930419.00 1521172.00 491953.50 3808070.00 Indolepyruvate 123034.60 102556.40 302339.00 200098.70 124582.70 112600.60 145466.40 265149.90 104842.00 150653.30 223107.80 532982.40 252698.60 130030.90 67767.45 57695.36 162067.90 N-formyl kynurenine 679773.20 73981.24 120333.00 364396.00 699121.20 715148.40 775952.50 157241.60 303923.70 752803.80 372478.50 303091.20 15389.36 279832.60 518621.20 106841.30 405824.80 g-Oxalo-crotonate 955553.70 83258.52 245920.80 222188.50 1150302.00 1119167.00 1144940.00 197944.00 166793.70 1118947.00 146781.70 94916.19 260272.20 210661.80 67985.91 206552.30 372908.50 Ectoine 92477.65 17331.85 19776.04 18631.50 88658.00 116230.80 74628.98 22819.82 16099.88 103077.90 13151.13 20181.77 19123.96 20181.10 20139.94 23071.99 24186.00 Ethanolamine phosphate 18475.82 2293278.00 514429.80 373905.60 419.35 1039.60 13367.16 505644.80 409513.10 3726.86 2090466.00 3035732.00 145798.10 3599969.00 874415.80 304562.20 2795273.00 N-Methylethanolamine phosphate 1538.74 291643.10 70303.73 135662.80 15340.32 1728.89 16945.98 117460.10 74687.17 13904.32 336091.40 918135.40 54364.89 433648.50 171834.70 40887.02 288486.00 CDP-choline 40159.26 72914.20 53566.36 20986.51 38998.45 30358.58 33868.75 34464.71 22177.29 30925.88 80722.24 89090.77 38840.01 56805.30 50041.32 11131.52 89364.60 Sphinganine 1-phosphate 125193.20 179826.20 150673.80 84097.61 124773.00 170331.80 105177.10 138495.50 129099.00 124102.30 162808.30 115538.50 169472.70 129582.40 164216.10 103006.40 179653.80 Butanoic acid 4969588.00 73269.70 51072.69 65184.27 3725752.00 5260816.00 3932513.00 55893.39 80037.41 5559580.00 61450.83 81510.38 49142.84 66605.44 60668.01 40932.07 43682.05 Heptanoic acid 305905.40 256438.30 226729.30 241983.50 280002.60 265767.90 294307.20 212495.00 230677.90 291032.60 211488.00 411237.50 243200.90 213616.10 259639.40 207619.90 256051.40 Octanoic acid (caprylate) 396277.40 348748.60 285244.80 294396.50 422414.00 419624.90 409950.80 280015.40 339759.20 418723.30 280940.10 412889.00 449763.60 284211.40 305536.00 275060.80 306230.50 Nonanoic acid (pelargonate) 1021148.00 1244593.00 1478754.00 1281244.00 1110398.00 993810.90 974086.70 1261610.00 1238888.00 992168.10 1146221.00 1560871.00 1549153.00 1323938.00 1156690.00 1141823.00 1439726.00 Decanoic acid (caprate) 5408436.00 774049.80 557578.60 629449.30 5258882.00 5370282.00 3380720.00 543127.20 546912.20 6665804.00 736081.80 961063.00 1078271.00 715048.30 865430.70 527140.20 623169.70 Dodecanoic acid 1567233.00 2111208.00 1068397.00 1108035.00 1353243.00 1702871.00 1085698.00 1133720.00 1326570.00 1589655.00 1013624.00 1124445.00 1407648.00 1275821.00 1394957.00 1106675.00 1284679.00 Tetradecanoic acid 3705928.00 8808577.00 5288216.00 8905828.00 2890144.00 6378546.00 2186336.00 4958278.00 8249298.00 4808400.00 5806876.00 8585004.00 11667010.00 6246104.00 10845680.00 5730920.00 8895330.00 Hexadecanoic acid 70385640.00 120878900.00 85628980.00 86056960.00 66812910.00 119032800.00 45806680.00 79848470.00 83404940.00 78765160.00 82803330.00 71900100.00 134117300.00 82007110.00 123793800.00 79187100.00 103151400.00 Octadecanoic acid 60464380.00 91574940.00 79516870.00 37440180.00 51887330.00 85656260.00 50168630.00 72340210.00 61966130.00 58589920.00 78984540.00 45567180.00 93340480.00 59857500.00 95990340.00 53961560.00 80594690.00 Tetradecenoic acid 246555.70 584687.00 365543.80 339725.90 169059.90 496452.20 173933.40 201174.20 1248943.00 449043.80 338443.00 483381.00 828210.80 218678.70 213290.40 247307.60 627818.20 Hexadecenoic acid 1601391.00 20990250.00 4123841.00 23264450.00 1092995.00 4638912.00 1189880.00 3437088.00 13081180.00 3132378.00 5958622.00 13115640.00 15454650.00 3611465.00 3281957.00 6178840.00 16912220.00 Octadecenoic acid 5190120.00 105960400.00 30974540.00 104260400.00 3587695.00 8362350.00 3969901.00 27193550.00 52877420.00 5047512.00 40460520.00 72290560.00 114626400.00 25920410.00 21225480.00 35104150.00 90146730.00 Linoleate 7794570.00 12674560.00 2331681.00 16806300.00 8465271.00 7927700.00 4887432.00 1816342.00 4896656.00 9220291.00 4396348.00 5493532.00 6684030.00 2396142.00 2043600.00 3146435.00 10392650.00 Octadecatrienoic acid 2627242.00 764196.50 81784.12 757667.50 2865484.00 2563710.00 1898444.00 87890.66 241335.50 3061423.00 196233.20 252284.00 311878.30 73174.84 106469.00 177408.40 406613.00 Eicosatetraenoic acid 238727.60 69286850.00 6780128.00 53862620.00 241709.50 197553.20 160312.50 6656712.00 17475960.00 264395.50 12205540.00 26463300.00 18773430.00 5225866.00 4960452.00 9570354.00 40869730.00 Eicosapentaenoic acid 91294.10 16726500.00 2306816.00 14941380.00 96646.75 95701.69 59393.51 1852519.00 3984677.00 166073.80 3352732.00 7835254.00 4268612.00 1578559.00 1664352.00 3985208.00 11836270.00 Docosahexaenoic acid 372494.90 23746580.00 7590266.00 14009120.00 231042.90 147160.80 159997.00 7926586.00 11021540.00 208913.90 10137460.00 9255229.00 9993863.00 4187424.00 7667380.00 8562567.00 26940950.00 Dodecanedioic acid 19043.06 34333.64 24482.80 16294.62 15779.27 17105.79 16546.26 16488.82 11537.95 14979.08 16442.48 212407.90 30307.38 18412.88 7418.56 15068.60 53899.21 (8Z-11Z-14Z)-Icosatrienoic acid 161727.50 9104657.00 1066067.00 10234970.00 140533.20 162174.60 131974.60 1243801.00 2546496.00 152500.80 2963886.00 3681317.00 3194531.00 1212938.00 1045953.00 2470381.00 7191034.00 (5Z-8Z-11Z-14Z-17Z)-Icosapentaenoic acid 91294.10 16726500.00 2306816.00 14941380.00 96646.75 95701.69 59393.51 1852519.00 3984677.00 166073.80 3352732.00 7835254.00 4268612.00 1578559.00 1664352.00 3985208.00 11836270.00 (7Z-10Z-13Z-16Z-19Z)-Docosa-7-10-13-16-19-pentaenoic acid 166026.40 22192520.00 6390958.00 17166030.00 126161.60 124408.60 116077.00 6266852.00 10372480.00 199403.90 10300460.00 8920981.00 13324660.00 4417586.00 6321494.00 9259778.00 27350510.00 3alpha-7alpha-12alpha-Trihydroxy-5beta-cholanate 33437.82 27895.87 29351.30 24318.24 38809.06 11638.54 29568.26 27162.91 9694.21 30319.71 27744.88 24692.10 7656.82 10046.46 27917.75 27520.26 30098.56 3alpha-12alpha-Dihydroxy-5beta-cholanate 144914.00 129139.50 114581.70 99284.18 129176.60 114581.10 106638.90 100059.70 112049.50 101853.60 112885.30 104924.90 89728.78 123332.70 112701.30 108802.90 110267.80 13(S)-HODE 104629.80 491736.70 117441.10 192816.20 102041.60 107063.00 86905.52 66887.20 99480.66 108458.20 118162.60 930044.10 228495.80 86828.01 61214.46 59449.96 363342.30 9(S)-HODE 44912.30 69110.77 98500.96 136134.90 54627.75 57532.22 41197.04 71446.81 57008.51 58133.05 71301.28 158170.10 97143.90 73448.68 79223.23 49410.82 120013.00 11(R)-HPETE/Leukotriene B4 (isobars) 76617.32 995068.00 275220.00 1030877.00 74579.44 257421.30 65822.62 205546.30 910960.30 187504.00 266603.50 390405.70 1099564.00 172046.10 159806.90 413837.40 710890.70 Prostaglandin A2 20546.29 36348.87 13944.79 20344.97 15810.09 19941.20 16223.14 16511.49 16384.83 15811.96 20078.37 28030.07 22923.42 17227.89 12222.18 15458.71 22603.17 Prostaglandin B2 12166.85 14165.57 10376.67 12731.53 9564.37 12628.25 11570.11 10308.34 14871.43 11538.46 12060.39 18136.29 10778.42 13049.90 11529.30 13411.01 11526.11 Prostaglandin D2/Thromboxane A2 (isobars) 41425.21 48500.53 52416.91 35581.70 36706.00 70016.85 34710.88 47961.31 266598.80 62696.67 34238.19 22625.40 159039.90 20618.13 12637.57 30476.65 25507.53 Prostaglandin E2 462024.10 832612.40 348843.10 566457.80 649779.10 833575.30 257142.20 363643.10 621751.70 638188.40 485874.80 446875.00 926938.50 628555.10 661405.10 612877.40 341146.20 Prostaglandin F2alpha/beta/D1 (isobars) 20474.97 13655.26 18647.66 20689.84 11367.09 13947.33 10249.29 19906.68 21899.41 14185.36 11968.51 17599.76 27884.27 16805.28 11329.06 23182.42 14897.73 Prostaglandin D3 (isobars) 6059.61 82364.79 8832.09 100118.90 1642.93 12590.44 0.00 5735.03 35374.95 19269.66 20951.49 44864.25 35088.65 22475.73 13010.95 15094.50 56249.93 Prostaglandin G2 296891.40 292092.70 225668.30 302670.40 299224.70 300732.60 254669.60 307229.50 275257.40 295401.20 274417.70 248992.00 264910.50 303446.90 265254.70 301317.20 272309.50 Thromboxane B2 0.00 474570.90 176926.50 110256.90 675.44 0.00 1423.06 144553.90 98397.04 0.00 83075.38 446016.30 156783.50 100089.70 60669.67 54019.99 468580.80 Leukotriene A4 3228.13 234678.50 34842.44 39611.35 3011.52 2323.37 0.00 31803.56 32074.17 2060.69 34284.17 347598.20 39101.37 32813.56 26678.39 22994.53 176128.00 Undecanoic acid 436876.70 325555.60 235968.80 268113.10 337703.80 354740.10 248745.50 271571.60 288730.30 399182.70 254196.90 340739.30 278340.60 295609.70 296206.20 280487.40 314969.20 Stearidonic acid 22589.19 54052.02 13055.24 35382.05 13275.55 27920.71 4150.00 9320.27 9347.68 14441.90 16953.68 15573.76 20851.20 9924.42 9760.33 13507.59 33404.27 trans-9-Octadecenoic acid 5190120.00 105960400.00 30974540.00 104260400.00 3587695.00 8362350.00 3969901.00 27193550.00 52877420.00 5047512.00 40460520.00 72290560.00 114626400.00 25920410.00 21225480.00 35104150.00 90146730.00 Docosatetraenoic acid 150942.30 4601724.00 906427.90 5922258.00 110950.00 149887.50 83452.29 979249.40 1854594.00 194779.80 1314156.00 1958494.00 3615665.00 682774.40 1076468.00 1811594.00 4930608.00 (15Z)-Tetracosenoic acid 193520.30 212615.90 1779.27 6249.91 266405.20 5256.08 72922.48 52899.34 76303.98 199119.60 251178.60 120678.10 3252.87 134772.00 200425.70 103900.40 2616.83 N1-Acetylspermine 16045.56 80185.16 34379.86 87413.77 15781.22 53067.96 13995.07 30464.90 54111.80 31934.37 50660.56 82369.12 78439.76 30369.73 30139.92 30400.46 80806.18 Ferric gluconate 489738.70 864.30 3808.57 0.00 88754.66 122944.70 67208.66 0.00 2419.80 94820.02 0.00 0.00 1730.53 2757.99 0.00 1648.23 1871.07 D-Alanyl-alanyl-poly(glycerolphosphate) 177729.10 359486.90 329206.00 296443.10 249920.30 187267.60 186266.80 259077.40 292217.30 273425.00 217464.80 241230.50 245309.60 293737.90 241395.70 182444.30 375076.10 Vanillate 29568.08 58634.16 45326.91 42158.82 37883.53 28952.12 25030.44 69575.27 54786.55 37386.17 28553.13 41513.65 51351.28 55289.59 33429.11 29256.97 57082.52 N-Acetylmethionine 45934.32 4099631.00 1248594.00 748828.80 22480.70 40206.11 39545.75 1149112.00 2308052.00 26236.19 5693700.00 6036134.00 295569.70 5365929.00 4304242.00 268058.50 7640672.00 10-Hydroxydecanoic acid 61305.05 45635.92 47735.31 32423.49 52719.82 31289.49 41965.42 43039.27 38182.89 42999.60 33290.65 52339.04 65420.04 40937.69 29087.85 41860.60 58073.60 Oxalosuccinate 90740.59 123661.40 81994.46 120681.70 90539.00 195523.00 178021.10 119765.80 95749.12 142804.20 219981.60 79708.99 36102.93 223401.80 108323.70 104377.00 153104.40 N-Carbamyl-L-glutamate 822338.80 535377.70 367982.40 175285.30 522772.20 658689.10 688489.30 253337.50 566083.70 567235.10 308246.20 286498.90 354285.40 199349.90 770018.20 252749.80 265398.90 MS_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name KEGG ID mz r.t. ATP C00002 505.9848 0.65 ADP C00008 426.0224 0.54 AMP C00020 346.0539 0.61 Adenine C00147 134.0459 0.66 GTP C00044 521.9797 0.74 GDP C00035 442.0167 0.59 Guanosine C00387 282.0845 0.87 Guanine C00242 150.0397 0.66 dCMP C00239 306.0504 0.62 Cytidine C00475 242.0782 0.61 UTP C00075 482.9577 0.62 UDP C00015 402.9960 0.56 UMP C00105 323.0281 0.60 Uracil C00106 111.0185 0.69 IDP C00104 427.0037 0.56 IMP C00130 347.0402 1.01 Inosine C00294 267.0742 0.67 Xanthine C00385 151.0249 0.62 3',5'-Cyclic IMP C00943 329.0296 0.56 5-6-Dihydrothymine C00906 127.0500 0.63 UDP-glucose C00029 565.0464 0.55 ADP-D-ribose C01882 558.0600 0.69 Phosphate C00009 96.9681 0.61 Diphosphate C00013 176.9343 0.60 D-Glucose C00031 179.0550 0.66 D-Glucose 6-phosphate C02965 259.0219 0.57 D-Fructose 1-6-bisphosphate C00354 338.9886 0.50 D-Glyceraldehyde 3-phosphate/Glycerone phosphate C00118 168.9887 0.62 2-3-Bisphosphoglycerate C03339 264.9510 0.58 2/3-Phospho-D-glycerate C00631 184.9845 0.55 Phosphoenolpyruvate C00074 166.9740 0.55 Pyruvate C00022 87.0072 0.64 Lactate C01432 89.0229 0.63 Mannitol C00392 181.0691 0.65 D-Ribose C00121 149.0453 0.63 Citrate C00158 191.0187 0.60 2-Oxoglutarate C00026 145.0129 0.56 Succinate C00042 117.0178 0.57 Fumarate C00122 115.0022 0.59 Malate C00149 133.0128 0.59 2-Hydroxyglutarate/Citramalate C02630 147.0282 0.56 6-Phospho-D-gluconate C00345 275.0168 0.60 D-Erythrose 4-phosphate C00279 199.0036 0.58 Sedoheptulose 1-phosphate C06222 289.0348 0.62 alpha-D-Ribose 1-phosphate C00620 229.0112 0.60 5-Phospho-alpha-D-ribose 1-diphosphate C00119 388.9413 0.64 Glutathione C00051 306.0779 0.65 Glutathione disulfide C00127 611.1441 0.55 5-Oxoproline C01879 128.0340 0.62 S-Glutathionyl-L-cysteine C05526 425.0801 0.60 Ascorbate C00072 175.0237 0.57 (5-L-Glutamyl)-L-glutamine C05283 274.1045 0.64 Cystathionine C00542 221.0617 0.66 Dimethylglycine C01026 102.0545 0.62 S-Adenosyl-L-homocysteine C00021 383.1155 1.90 3-Phosphonopyruvate C02798 166.9740 0.54 N-Glycoloyl-neuraminate C03410 324.0950 0.78 UDP-N-acetyl-D-glucosamine C00043 606.0742 0.53 CMP-N-acetylneuraminate C00128 613.1364 0.59 Glycolate C00160 75.0072 0.67 Carnosine C00386 225.0988 0.66 trans-4-Hydroxy-L-proline C01157 130.0497 0.64 Pantothenol C00864 218.1026 0.64 5-6-Dihydrouracil C00429 113.0342 0.63 Pantetheine C00831 277.1249 1.82 Indole-3-acetaldehyde C00637 158.0599 1.91 Indolepyruvate C00331 202.0481 0.69 N-formyl kynurenine C02700 235.0749 0.65 g-Oxalo-crotonate C03453 157.0112 0.66 Ectoine C06231 141.0654 1.79 Ethanolamine phosphate C00346 140.0102 0.58 N-Methylethanolamine phosphate C01210 154.0249 0.60 CDP-choline C00307 487.1005 1.11 Sphinganine 1-phosphate C01120 380.2545 3.42 Butanoic acid C00246 87.0436 0.67 Heptanoic acid C17714 129.0907 1.70 Octanoic acid (caprylate) C06423 143.1064 1.74 Nonanoic acid (pelargonate) C01601 157.1221 1.98 Decanoic acid (caprate) C01571 171.1379 2.11 Dodecanoic acid C02679 199.1694 2.31 Tetradecanoic acid C06424 227.2009 2.54 Hexadecanoic acid C00249 255.2325 2.90 Octadecanoic acid C01530 283.2638 3.41 Tetradecenoic acid C08322 225.1854 2.35 Hexadecenoic acid C08362 253.2169 2.58 Octadecenoic acid C00712 281.2482 2.93 Linoleate C01595 279.2326 2.63 Octadecatrienoic acid C06427 277.2171 2.44 Eicosatetraenoic acid C00219 303.2325 2.53 Eicosapentaenoic acid C06428 301.2172 2.38 Docosahexaenoic acid C06429 327.2328 2.44 Dodecanedioic acid C02678 229.1441 1.69 (8Z-11Z-14Z)-Icosatrienoic acid C03242 305.2482 2.70 (5Z-8Z-11Z-14Z-17Z)-Icosapentaenoic acid C06428 301.2172 2.38 (7Z-10Z-13Z-16Z-19Z)-Docosa-7-10-13-16-19-pentaenoic acid C16513 329.2483 2.55 3alpha-7alpha-12alpha-Trihydroxy-5beta-cholanate C00695 407.2826 2.08 3alpha-12alpha-Dihydroxy-5beta-cholanate C04483 391.2878 2.27 13(S)-HODE C14762 295.2275 2.16 9(S)-HODE C14767 295.2275 2.27 11(R)-HPETE/Leukotriene B4 (isobars) C14820 335.2202 2.58 Prostaglandin A2 C05953 333.2095 1.73 Prostaglandin B2 C05954 333.2096 2.01 Prostaglandin D2/Thromboxane A2 (isobars) C00696 351.2201 1.92 Prostaglandin E2 C00584 351.2206 2.90 Prostaglandin F2alpha/beta/D1 (isobars) C00639 353.2303 2.16 Prostaglandin D3 (isobars) C13802 349.2047 2.58 Prostaglandin G2 C05956 367.2138 2.18 Thromboxane B2 C05963 369.2279 1.72 Leukotriene A4 C00909 317.2126 2.08 Undecanoic acid C17715 185.1538 2.20 Stearidonic acid C16300 275.2013 2.33 trans-9-Octadecenoic acid C01712 281.2481 2.93 Docosatetraenoic acid C16527 331.2638 2.78 (15Z)-Tetracosenoic acid C08323 365.3423 2.20 N1-Acetylspermine C02567 243.2233 2.70 Ferric gluconate C13511 194.0469 1.82 D-Alanyl-alanyl-poly(glycerolphosphate) C04457 313.0782 2.11 Vanillate C06672 167.0353 2.23 N-Acetylmethionine C02712 190.0525 0.64 10-Hydroxydecanoic acid C02774 187.1330 1.71 Oxalosuccinate C05379 189.0064 3.80 N-Carbamyl-L-glutamate C05829 189.0488 0.62 METABOLITES_END #END