#METABOLOMICS WORKBENCH iuk41_20240328_121846 DATATRACK_ID:4749 STUDY_ID:ST003149 ANALYSIS_ID:AN005167 PROJECT_ID:PR001958 VERSION 1 CREATED_ON March 28, 2024, 4:00 pm #PROJECT PR:PROJECT_TITLE Impact of early-life exposure to a potent aryl hydrocarbon receptor ligand on PR:PROJECT_TITLE gut microbiota and host glucose homeostasis in C57BL/6J male mice PR:PROJECT_SUMMARY This study aimed to explore the association between early-life exposure to a PR:PROJECT_SUMMARY potent aryl hydrocarbon receptor (AHR) agonist and persistent disruptions in the PR:PROJECT_SUMMARY microbiota, leading to impaired metabolic homeostasis later in life. This study PR:PROJECT_SUMMARY utilized metagenomics, NMR- and mass spectrometry-based metabolomics, and PR:PROJECT_SUMMARY biochemical assays to analyze the gut microbiome composition and function, as PR:PROJECT_SUMMARY well as the physiological and metabolic effects of early-life exposure to PR:PROJECT_SUMMARY 2,3,7,8-tetrachlorodibenzofuran (TCDF) in conventional, germ-free (GF), and PR:PROJECT_SUMMARY Ahr-null mice. The impact of TCDF on Akkermansia muciniphila (A. muciniphila) in PR:PROJECT_SUMMARY vitro was assessed using optical density (OD 600), flow cytometry, PR:PROJECT_SUMMARY transcriptomics, and mass spectrometry-based metabolomics. PR:INSTITUTE Penn State University PR:DEPARTMENT Department of Veterinary and Biomedical Sciences PR:LAST_NAME Koo PR:FIRST_NAME Imhoi PR:ADDRESS 307B Life Science Building PR:EMAIL iuk41@psu.edu PR:PHONE 18148657803 #STUDY ST:STUDY_TITLE Impact of early-life exposure to a potent aryl hydrocarbon receptor ligand on ST:STUDY_TITLE gut microbiota and host glucose homeostasis in C57BL/6J male mice (Part I) ST:STUDY_SUMMARY This study aimed to explore the association between early-life exposure to a ST:STUDY_SUMMARY potent aryl hydrocarbon receptor (AHR) agonist and persistent disruptions in the ST:STUDY_SUMMARY microbiota, leading to impaired metabolic homeostasis later in life. This study ST:STUDY_SUMMARY utilized metagenomics, NMR- and mass spectrometry-based metabolomics, and ST:STUDY_SUMMARY biochemical assays to analyze the gut microbiome composition and function, as ST:STUDY_SUMMARY well as the physiological and metabolic effects of early-life exposure to ST:STUDY_SUMMARY 2,3,7,8-tetrachlorodibenzofuran (TCDF) in conventional, germ-free (GF), and ST:STUDY_SUMMARY Ahr-null mice. The impact of TCDF on Akkermansia muciniphila (A. muciniphila) in ST:STUDY_SUMMARY vitro was assessed using optical density (OD 600), flow cytometry, ST:STUDY_SUMMARY transcriptomics, and mass spectrometry-based metabolomics. ST:INSTITUTE Penn State University ST:DEPARTMENT Department of Veterinary and Biomedical Sciences ST:LAST_NAME Koo ST:FIRST_NAME Imhoi ST:ADDRESS 307B Life Science Building ST:EMAIL iuk41@psu.edu ST:PHONE 8148107425 #SUBJECT SU:SUBJECT_TYPE Mammal SU:SUBJECT_SPECIES Mus musculus SU:TAXONOMY_ID 10090 SU:AGE_OR_AGE_RANGE 4 weeks to 5 months SU:GENDER Male #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__1 AHR.KO.liver.lipid.with.TCDF__1 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.1.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__2 AHR.KO.liver.lipid.with.TCDF__2 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.2.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__3 AHR.KO.liver.lipid.with.TCDF__3 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.3.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__4 AHR.KO.liver.lipid.with.TCDF__4 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.4.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__5 AHR.KO.liver.lipid.with.TCDF__5 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.5.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__6 AHR.KO.liver.lipid.with.TCDF__6 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.6.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__7 AHR.KO.liver.lipid.with.TCDF__7 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.7.fid SUBJECT_SAMPLE_FACTORS AHR.KO.liver.lipid.with.TCDF__8 AHR.KO.liver.lipid.with.TCDF__8 Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=1.AHR KO mice liver lipid with TCDF.8.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__1 GF.cecal.content_Akkermansia__1 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.1.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__2 GF.cecal.content_Akkermansia__2 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.2.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__3 GF.cecal.content_Akkermansia__3 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.3.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__4 GF.cecal.content_Akkermansia__4 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.4.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__5 GF.cecal.content_Akkermansia__5 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.5.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__6 GF.cecal.content_Akkermansia__6 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.6.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__7 GF.cecal.content_Akkermansia__7 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.7.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__8 GF.cecal.content_Akkermansia__8 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.8.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__9 GF.cecal.content_Akkermansia__9 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.9.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__10 GF.cecal.content_Akkermansia__10 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.10.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__11 GF.cecal.content_Akkermansia__11 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.11.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_Akkermansia__12 GF.cecal.content_Akkermansia__12 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water RAW_FILE_NAME=2.GF mice cecal content_Akkermansia transplantation.12.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__1 GF.cecal.content_cecal.bacteria__1 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.1.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__2 GF.cecal.content_cecal.bacteria__2 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.2.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__3 GF.cecal.content_cecal.bacteria__3 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.3.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__4 GF.cecal.content_cecal.bacteria__4 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.4.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__6 GF.cecal.content_cecal.bacteria__6 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.6.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__7 GF.cecal.content_cecal.bacteria__7 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.7.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__8 GF.cecal.content_cecal.bacteria__8 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.8.fid SUBJECT_SAMPLE_FACTORS GF.cecal.content_cecal.bacteria__9 GF.cecal.content_cecal.bacteria__9 Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=3.GF mice cecal content_cecal bacteria transplantantion.9.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__1 GF.liver.lipid._cecal.bacteria__1 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.1.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__2 GF.liver.lipid._cecal.bacteria__2 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.2.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__3 GF.liver.lipid._cecal.bacteria__3 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.3.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__4 GF.liver.lipid._cecal.bacteria__4 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.4.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__5 GF.liver.lipid._cecal.bacteria__5 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.5.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__6 GF.liver.lipid._cecal.bacteria__6 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.6.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__7 GF.liver.lipid._cecal.bacteria__7 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.7.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__8 GF.liver.lipid._cecal.bacteria__8 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.8.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__9 GF.liver.lipid._cecal.bacteria__9 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.9.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid._cecal.bacteria__10 GF.liver.lipid._cecal.bacteria__10 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group RAW_FILE_NAME=4.GF mice liver lipid _cecal bacteria transplantantion.10.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__1 GF.liver.lipid.with.TCDF__1 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=5.GF mice liver lipid with TCDF.1.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__2 GF.liver.lipid.with.TCDF__2 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=5.GF mice liver lipid with TCDF.2.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__3 GF.liver.lipid.with.TCDF__3 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=5.GF mice liver lipid with TCDF.3.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__4 GF.liver.lipid.with.TCDF__4 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=5.GF mice liver lipid with TCDF.4.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__5 GF.liver.lipid.with.TCDF__5 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=5.GF mice liver lipid with TCDF.5.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__6 GF.liver.lipid.with.TCDF__6 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=5.GF mice liver lipid with TCDF.6.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__7 GF.liver.lipid.with.TCDF__7 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=5.GF mice liver lipid with TCDF.7.fid SUBJECT_SAMPLE_FACTORS GF.liver.lipid.with.TCDF__8 GF.liver.lipid.with.TCDF__8 Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=5.GF mice liver lipid with TCDF.8.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__1 cecal.content.with.TCDF_long__1 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=7.mice cecal content with TCDF_long.1.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__2 cecal.content.with.TCDF_long__2 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=7.mice cecal content with TCDF_long.2.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__3 cecal.content.with.TCDF_long__3 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=7.mice cecal content with TCDF_long.3.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__4 cecal.content.with.TCDF_long__4 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=7.mice cecal content with TCDF_long.4.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__5 cecal.content.with.TCDF_long__5 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=7.mice cecal content with TCDF_long.5.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__6 cecal.content.with.TCDF_long__6 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=7.mice cecal content with TCDF_long.6.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__7 cecal.content.with.TCDF_long__7 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=7.mice cecal content with TCDF_long.7.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__8 cecal.content.with.TCDF_long__8 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=7.mice cecal content with TCDF_long.8.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__9 cecal.content.with.TCDF_long__9 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=7.mice cecal content with TCDF_long.9.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__10 cecal.content.with.TCDF_long__10 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=7.mice cecal content with TCDF_long.10.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__11 cecal.content.with.TCDF_long__11 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=7.mice cecal content with TCDF_long.11.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_long__12 cecal.content.with.TCDF_long__12 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=7.mice cecal content with TCDF_long.12.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__1 cecal.content.with.TCDF_short__1 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=8.mice cecal content with TCDF_short.1.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__2 cecal.content.with.TCDF_short__2 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=8.mice cecal content with TCDF_short.2.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__3 cecal.content.with.TCDF_short__3 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=8.mice cecal content with TCDF_short.3.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__4 cecal.content.with.TCDF_short__4 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=8.mice cecal content with TCDF_short.4.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__5 cecal.content.with.TCDF_short__5 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=8.mice cecal content with TCDF_short.5.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__6 cecal.content.with.TCDF_short__6 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=8.mice cecal content with TCDF_short.6.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__7 cecal.content.with.TCDF_short__7 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=8.mice cecal content with TCDF_short.7.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__8 cecal.content.with.TCDF_short__8 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=8.mice cecal content with TCDF_short.8.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__9 cecal.content.with.TCDF_short__9 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=8.mice cecal content with TCDF_short.9.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__10 cecal.content.with.TCDF_short__10 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=8.mice cecal content with TCDF_short.10.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__11 cecal.content.with.TCDF_short__11 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=8.mice cecal content with TCDF_short.11.fid SUBJECT_SAMPLE_FACTORS cecal.content.with.TCDF_short__12 cecal.content.with.TCDF_short__12 Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=8.mice cecal content with TCDF_short.12.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__201 liver.lipid.with.TCDF_long__201 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=9.mice liver lipid with TCDF_long.201.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__202 liver.lipid.with.TCDF_long__202 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=9.mice liver lipid with TCDF_long.202.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__203 liver.lipid.with.TCDF_long__203 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=9.mice liver lipid with TCDF_long.203.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__204 liver.lipid.with.TCDF_long__204 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=9.mice liver lipid with TCDF_long.204.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__205 liver.lipid.with.TCDF_long__205 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=9.mice liver lipid with TCDF_long.205.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__206 liver.lipid.with.TCDF_long__206 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=9.mice liver lipid with TCDF_long.206.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__207 liver.lipid.with.TCDF_long__207 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=9.mice liver lipid with TCDF_long.207.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__208 liver.lipid.with.TCDF_long__208 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=9.mice liver lipid with TCDF_long.208.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__209 liver.lipid.with.TCDF_long__209 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=9.mice liver lipid with TCDF_long.209.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__210 liver.lipid.with.TCDF_long__210 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=9.mice liver lipid with TCDF_long.210.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__211 liver.lipid.with.TCDF_long__211 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=9.mice liver lipid with TCDF_long.211.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_long__212 liver.lipid.with.TCDF_long__212 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=9.mice liver lipid with TCDF_long.212.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__101 liver.lipid.with.TCDF_short__101 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=10.mice liver lipid with TCDF_short.101.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__102 liver.lipid.with.TCDF_short__102 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=10.mice liver lipid with TCDF_short.102.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__103 liver.lipid.with.TCDF_short__103 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=10.mice liver lipid with TCDF_short.103.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__104 liver.lipid.with.TCDF_short__104 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=10.mice liver lipid with TCDF_short.104.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__105 liver.lipid.with.TCDF_short__105 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=10.mice liver lipid with TCDF_short.105.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__106 liver.lipid.with.TCDF_short__106 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=10.mice liver lipid with TCDF_short.106.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__107 liver.lipid.with.TCDF_short__107 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=10.mice liver lipid with TCDF_short.107.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__108 liver.lipid.with.TCDF_short__108 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=10.mice liver lipid with TCDF_short.108.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__109 liver.lipid.with.TCDF_short__109 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=10.mice liver lipid with TCDF_short.109.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__110 liver.lipid.with.TCDF_short__110 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=10.mice liver lipid with TCDF_short.110.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__111 liver.lipid.with.TCDF_short__111 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=10.mice liver lipid with TCDF_short.111.fid SUBJECT_SAMPLE_FACTORS liver.lipid.with.TCDF_short__112 liver.lipid.with.TCDF_short__112 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=10.mice liver lipid with TCDF_short.112.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__1 liver.with.TCDF_.long__1 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=11.mice liver with TCDF_ long.1.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__2 liver.with.TCDF_.long__2 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=11.mice liver with TCDF_ long.2.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__3 liver.with.TCDF_.long__3 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=11.mice liver with TCDF_ long.3.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__4 liver.with.TCDF_.long__4 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=11.mice liver with TCDF_ long.4.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__5 liver.with.TCDF_.long__5 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=11.mice liver with TCDF_ long.5.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__6 liver.with.TCDF_.long__6 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=11.mice liver with TCDF_ long.6.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__7 liver.with.TCDF_.long__7 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=11.mice liver with TCDF_ long.7.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__8 liver.with.TCDF_.long__8 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=11.mice liver with TCDF_ long.8.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__9 liver.with.TCDF_.long__9 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=11.mice liver with TCDF_ long.9.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__10 liver.with.TCDF_.long__10 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=11.mice liver with TCDF_ long.10.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__11 liver.with.TCDF_.long__11 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=11.mice liver with TCDF_ long.11.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_.long__12 liver.with.TCDF_.long__12 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=11.mice liver with TCDF_ long.12.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__1 liver.with.TCDF_short__1 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=12.mice liver with TCDF_short.1.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__2 liver.with.TCDF_short__2 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=12.mice liver with TCDF_short.2.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__3 liver.with.TCDF_short__3 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=12.mice liver with TCDF_short.3.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__4 liver.with.TCDF_short__4 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=12.mice liver with TCDF_short.4.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__5 liver.with.TCDF_short__5 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=12.mice liver with TCDF_short.5.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__6 liver.with.TCDF_short__6 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=12.mice liver with TCDF_short.6.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__7 liver.with.TCDF_short__7 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=12.mice liver with TCDF_short.7.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__8 liver.with.TCDF_short__8 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=12.mice liver with TCDF_short.8.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__9 liver.with.TCDF_short__9 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=12.mice liver with TCDF_short.9.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__10 liver.with.TCDF_short__10 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=12.mice liver with TCDF_short.10.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__11 liver.with.TCDF_short__11 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=12.mice liver with TCDF_short.11.fid SUBJECT_SAMPLE_FACTORS liver.with.TCDF_short__12 liver.with.TCDF_short__12 Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=12.mice liver with TCDF_short.12.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__1 urine.with.TCDF_long__1 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=13.mice urine with TCDF_long.1.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__2 urine.with.TCDF_long__2 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=13.mice urine with TCDF_long.2.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__3 urine.with.TCDF_long__3 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=13.mice urine with TCDF_long.3.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__4 urine.with.TCDF_long__4 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=13.mice urine with TCDF_long.4.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__5 urine.with.TCDF_long__5 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=13.mice urine with TCDF_long.5.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__6 urine.with.TCDF_long__6 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=13.mice urine with TCDF_long.6.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__7 urine.with.TCDF_long__7 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=13.mice urine with TCDF_long.7.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__8 urine.with.TCDF_long__8 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=13.mice urine with TCDF_long.8.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__9 urine.with.TCDF_long__9 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=13.mice urine with TCDF_long.9.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__10 urine.with.TCDF_long__10 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=13.mice urine with TCDF_long.10.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__11 urine.with.TCDF_long__11 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=13.mice urine with TCDF_long.11.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_long__12 urine.with.TCDF_long__12 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=13.mice urine with TCDF_long.12.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__1 urine.with.TCDF_short__1 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=14.mice urine with TCDF_short.1.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__2 urine.with.TCDF_short__2 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=14.mice urine with TCDF_short.2.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__3 urine.with.TCDF_short__3 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=14.mice urine with TCDF_short.3.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__4 urine.with.TCDF_short__4 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=14.mice urine with TCDF_short.4.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__5 urine.with.TCDF_short__5 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=14.mice urine with TCDF_short.5.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__6 urine.with.TCDF_short__6 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle RAW_FILE_NAME=14.mice urine with TCDF_short.6.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__7 urine.with.TCDF_short__7 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=14.mice urine with TCDF_short.7.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__8 urine.with.TCDF_short__8 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=14.mice urine with TCDF_short.8.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__9 urine.with.TCDF_short__9 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=14.mice urine with TCDF_short.9.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__10 urine.with.TCDF_short__10 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=14.mice urine with TCDF_short.10.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__11 urine.with.TCDF_short__11 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=14.mice urine with TCDF_short.11.fid SUBJECT_SAMPLE_FACTORS urine.with.TCDF_short__12 urine.with.TCDF_short__12 Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF RAW_FILE_NAME=14.mice urine with TCDF_short.12.fid #COLLECTION CO:COLLECTION_SUMMARY Blood collection via cardiac puncture was performed post-sacrifice, and serum CO:COLLECTION_SUMMARY samples were obtained by centrifugation (5,000 g, 4°C) for 5 min using BD CO:COLLECTION_SUMMARY Microtainer Boold Collection Tubes (BD, Franklin Lakes, NJ). Liver, cecal CO:COLLECTION_SUMMARY content, adipose, and intestinal tissue samples were collected immediately after CO:COLLECTION_SUMMARY sacrifice by carbon dioxide asphyxiation and kept at -80°C. Urine and feces CO:COLLECTION_SUMMARY were collected using separate cages before sacrifice and kept at -80°C. CO:SAMPLE_TYPE Liver #TREATMENT TR:TREATMENT_SUMMARY 1. After feed training, mice were fed pills containing TCDF (dissolved in TR:TREATMENT_SUMMARY acetone) or acetone alone as vehicle, and one pill uniformly contained 0.46 µg TR:TREATMENT_SUMMARY TCDF (24 µg/kg as final dose). Mice were housed singly in an empty cage and TR:TREATMENT_SUMMARY monitored to ensure the pill was consumed in the morning for 5 days. 2. TCDF (24 TR:TREATMENT_SUMMARY µg/kg) or corn oil as vehicle were administered to age-matched male GF and TR:TREATMENT_SUMMARY Ahr-/- mice by oral gavage once daily for five days (n = 4 per group). 3. TR:TREATMENT_SUMMARY Four-week-old male GF C57BL/6J mice were orally gavaged with 100 µL of cecal TR:TREATMENT_SUMMARY suspension (100 mg in 1 mL sterile BHI CHV media) from vehicle or TCDF treated TR:TREATMENT_SUMMARY mice in long-duration model. 4. A. muciniphila was administered to GF mice by TR:TREATMENT_SUMMARY oral gavage at one dose 107 CFU/0.1 mL suspended in sterile BHI CHV media TR:TREATMENT_SUMMARY containing an end concentration of glycerol (15% vol/vol). #SAMPLEPREP SP:SAMPLEPREP_SUMMARY Each plasma sample (200 μL) was mixed with 400 μL of saline solution SP:SAMPLEPREP_SUMMARY (containing 75% D2O, 0.9% NaCl, 0.04% NaN3) and transferred into 5 mm NMR tubes SP:SAMPLEPREP_SUMMARY for NMR analysis. For preparation of urine samples, 550 μL urine was blended SP:SAMPLEPREP_SUMMARY with 55 μL of phosphate buffer (K2HPO4/NaH2PO4, 1.5 M, pH 7.4, 100% D2O) SP:SAMPLEPREP_SUMMARY containing 0.01% TSP for chemical shift reference (δ0.00). After centrifugation SP:SAMPLEPREP_SUMMARY (11 180 ×g, 4 °C) for 10 min, 550 μL supernatant was transferred into 5 mm SP:SAMPLEPREP_SUMMARY NMR tubes for NMR analysis. Each liver tissue sample (55 ± 5 mg) was extracted SP:SAMPLEPREP_SUMMARY three times with 600 μL of methanol/H2O (2:1) using a Qiagen tissue-lyzer. SP:SAMPLEPREP_SUMMARY Three resultant supernatants were combined and subjected to centrifugation SP:SAMPLEPREP_SUMMARY (16 099 ×g, 4 °C, 10 min). After removing methanol in vacuo, the resultant SP:SAMPLEPREP_SUMMARY supernatant was lyophilized, weighed, and reconstituted into 600 μL phosphate SP:SAMPLEPREP_SUMMARY buffer (0.1 M, K2HPO4/NaH2PO4, pH 7.4) containing 0.005% TSP, 50% D2O and 0.01% SP:SAMPLEPREP_SUMMARY NaN3. After final centrifugation (16 099 ×g, 4 °C, 10 min), each supernatant SP:SAMPLEPREP_SUMMARY (550 μL) was transferred into a 5 mm NMR tube for NMR analysis. Each fecal SP:SAMPLEPREP_SUMMARY sample (55 ± 5 mg) were extracted twice with 500 μL phosphate buffer (0.1 M, SP:SAMPLEPREP_SUMMARY K2HPO4/NaH2PO4, pH 7.4) containing 0.005% TSP, 30% D2O and 0.01% NaN3. After SP:SAMPLEPREP_SUMMARY centrifugation (16 099 ×g, 4 °C, 10 min), 600 μL combined supernatants were SP:SAMPLEPREP_SUMMARY transferred into 5 mm NMR tubes for NMR analysis. For liver lipid SP:SAMPLEPREP_SUMMARY quantification, 50 mg of liver tissue was homogenized in 1 mL pre-cooled SP:SAMPLEPREP_SUMMARY chloroform/methanol mix [1:1 (v/v)], followed by adding 296 µL water. After SP:SAMPLEPREP_SUMMARY centrifugation (10,000 g, 4°C) for 10 min, the lower phase was dried in a SP:SAMPLEPREP_SUMMARY vacuum and reconstituted in 600 µL of deuterated chloroform containing 0.03% SP:SAMPLEPREP_SUMMARY (v/v) tetramethylsilane (TMS). #ANALYSIS AN:ANALYSIS_TYPE NMR #NMR NM:INSTRUMENT_NAME Bruker Avance NEO 600 MHz NM:INSTRUMENT_TYPE FT-NMR NM:NMR_EXPERIMENT_TYPE 1D-1H NM:SPECTROMETER_FREQUENCY 600 MHz #NMR_METABOLITE_DATA NMR_METABOLITE_DATA:UNITS µmol/g NMR_METABOLITE_DATA_START Samples liver.with.TCDF_short__1 liver.with.TCDF_short__2 liver.with.TCDF_short__3 liver.with.TCDF_short__4 liver.with.TCDF_short__5 liver.with.TCDF_short__6 liver.with.TCDF_short__7 liver.with.TCDF_short__8 liver.with.TCDF_short__9 liver.with.TCDF_short__10 liver.with.TCDF_short__11 liver.with.TCDF_short__12 liver.with.TCDF_.long__1 liver.with.TCDF_.long__2 liver.with.TCDF_.long__3 liver.with.TCDF_.long__4 liver.with.TCDF_.long__5 liver.with.TCDF_.long__6 liver.with.TCDF_.long__7 liver.with.TCDF_.long__8 liver.with.TCDF_.long__9 liver.with.TCDF_.long__10 liver.with.TCDF_.long__11 liver.with.TCDF_.long__12 liver.lipid.with.TCDF_short__101 liver.lipid.with.TCDF_short__102 liver.lipid.with.TCDF_short__103 liver.lipid.with.TCDF_short__104 liver.lipid.with.TCDF_short__105 liver.lipid.with.TCDF_short__106 liver.lipid.with.TCDF_short__107 liver.lipid.with.TCDF_short__108 liver.lipid.with.TCDF_short__109 liver.lipid.with.TCDF_short__110 liver.lipid.with.TCDF_short__111 liver.lipid.with.TCDF_short__112 liver.lipid.with.TCDF_long__201 liver.lipid.with.TCDF_long__202 liver.lipid.with.TCDF_long__203 liver.lipid.with.TCDF_long__204 liver.lipid.with.TCDF_long__205 liver.lipid.with.TCDF_long__206 liver.lipid.with.TCDF_long__207 liver.lipid.with.TCDF_long__208 liver.lipid.with.TCDF_long__209 liver.lipid.with.TCDF_long__210 liver.lipid.with.TCDF_long__211 liver.lipid.with.TCDF_long__212 AHR.KO.liver.lipid.with.TCDF__1 AHR.KO.liver.lipid.with.TCDF__2 AHR.KO.liver.lipid.with.TCDF__3 AHR.KO.liver.lipid.with.TCDF__7 AHR.KO.liver.lipid.with.TCDF__4 AHR.KO.liver.lipid.with.TCDF__5 AHR.KO.liver.lipid.with.TCDF__6 AHR.KO.liver.lipid.with.TCDF__8 cecal.content.with.TCDF_short__1 cecal.content.with.TCDF_short__2 cecal.content.with.TCDF_short__3 cecal.content.with.TCDF_short__4 cecal.content.with.TCDF_short__5 cecal.content.with.TCDF_short__6 cecal.content.with.TCDF_short__7 cecal.content.with.TCDF_short__8 cecal.content.with.TCDF_short__9 cecal.content.with.TCDF_short__10 cecal.content.with.TCDF_short__11 cecal.content.with.TCDF_short__12 cecal.content.with.TCDF_long__1 cecal.content.with.TCDF_long__2 cecal.content.with.TCDF_long__3 cecal.content.with.TCDF_long__4 cecal.content.with.TCDF_long__5 cecal.content.with.TCDF_long__6 cecal.content.with.TCDF_long__7 cecal.content.with.TCDF_long__8 cecal.content.with.TCDF_long__9 cecal.content.with.TCDF_long__10 cecal.content.with.TCDF_long__11 cecal.content.with.TCDF_long__12 GF.cecal.content_cecal.bacteria__1 GF.cecal.content_cecal.bacteria__2 GF.cecal.content_cecal.bacteria__3 GF.cecal.content_cecal.bacteria__4 GF.cecal.content_cecal.bacteria__6 GF.cecal.content_cecal.bacteria__7 GF.cecal.content_cecal.bacteria__8 GF.cecal.content_cecal.bacteria__9 GF.cecal.content_Akkermansia__6 GF.cecal.content_Akkermansia__7 GF.cecal.content_Akkermansia__11 GF.cecal.content_Akkermansia__12 GF.cecal.content_Akkermansia__8 GF.cecal.content_Akkermansia__9 GF.cecal.content_Akkermansia__10 GF.cecal.content_Akkermansia__1 GF.cecal.content_Akkermansia__2 GF.cecal.content_Akkermansia__3 GF.cecal.content_Akkermansia__4 GF.cecal.content_Akkermansia__5 GF.liver.lipid.with.TCDF__1 GF.liver.lipid.with.TCDF__2 GF.liver.lipid.with.TCDF__3 GF.liver.lipid.with.TCDF__4 GF.liver.lipid.with.TCDF__5 GF.liver.lipid.with.TCDF__6 GF.liver.lipid.with.TCDF__7 GF.liver.lipid.with.TCDF__8 urine.with.TCDF_short__1 urine.with.TCDF_short__2 urine.with.TCDF_short__3 urine.with.TCDF_short__4 urine.with.TCDF_short__5 urine.with.TCDF_short__6 urine.with.TCDF_short__7 urine.with.TCDF_short__8 urine.with.TCDF_short__9 urine.with.TCDF_short__10 urine.with.TCDF_short__11 urine.with.TCDF_short__12 urine.with.TCDF_long__1 urine.with.TCDF_long__2 urine.with.TCDF_long__3 urine.with.TCDF_long__4 urine.with.TCDF_long__5 urine.with.TCDF_long__6 urine.with.TCDF_long__7 urine.with.TCDF_long__8 urine.with.TCDF_long__9 urine.with.TCDF_long__10 urine.with.TCDF_long__11 urine.with.TCDF_long__12 GF.liver.lipid._cecal.bacteria__1 GF.liver.lipid._cecal.bacteria__2 GF.liver.lipid._cecal.bacteria__3 GF.liver.lipid._cecal.bacteria__4 GF.liver.lipid._cecal.bacteria__5 GF.liver.lipid._cecal.bacteria__6 GF.liver.lipid._cecal.bacteria__7 GF.liver.lipid._cecal.bacteria__8 GF.liver.lipid._cecal.bacteria__9 GF.liver.lipid._cecal.bacteria__10 Factors Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:Ahr-/- C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia +ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:ABX water Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia Sample source:cecal content | Genotype:GF C57BL/6J mice | Treatment:Akkermansia Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:vehicle Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:vehicle Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:urine | Genotype:WT C57BL/6J mice | Treatment:TCDF Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from vehicle group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Sample source:liver | Genotype:GF C57BL/6J mice | Treatment:cecal gavage from TCDF group Glucose 66.02902 75.79344 70.41737 63.63052 85.19608 76.70708 69.56393 73.12726 69.72163 74.73473 62.46688 70.54906 103.0413 101.0058 134.6952 115.9444 151.0738 141.1366 123.8619 121.5149 126.8191 144.8771 135.6114 132.9753 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.33618 37.2586 38.40408 40.2208 39.71111 78.7489 47.77667 81.01283 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Glycogen 19.94113 26.85743 25.9732 23.81134 39.47917 30.93883 32.27313 32.78453 34.85019 33.85168 31.98295 31.38004 55.77097 56.48978 57.83388 47.33013 52.43069 50.39642 63.96238 57.32349 78.73663 62.00393 55.74141 58.87782 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.700958 21.83558 7.072365 17.41225 7.642695 29.69382 5.76027 21.7857 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA UDP-glucose 0.4109 0.289775 0.3819413 0.2699497 0.2186186 0.2668992 0.3642009 0.4043367 0.4454258 0.4413837 0.3587001 0.4259163 0.1308585 0.1553957 0.1837168 0.1338053 0.2850325 0.2304951 0.2511628 0.319604 0.3490446 0.4271186 0.5128571 0.4191781 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.1394656 0.301875 0.3200716 0.3232 0.4854348 0.3277002 0.5966492 0.4566667 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.023964 9.338853 8.173699 8.061214 8.1494325 6.168451 10.35686 11.94655 9.461932 9.507602 9.304702 11.01635 6.576452 5.964225 8.211788 7.032209 8.194062 7.767 9.368967 7.253826 8.868746 8.43811 7.415814 7.915371 9.491859 10.08946 10.39166 7.634554 10.48966 10.53121 10.01207 10.3358 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.113708 9.532438 8.471268 9.101681 8.50759 10.30199 8.801509 9.392556 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.5616 5.098736 7.754075 7.614361 8.261654 7.740592 9.413283 7.066124 7.320296 7.866289 FC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.650217 5.929155 5.650921 5.296528 5.38170525 4.069854 6.689655 7.79514 6.270033 6.136998 6.042828 7.366307 3.829609 3.206401 5.063986 4.006115 4.874099 4.26762 5.744823 4.278979 5.108466 6.980002 5.437412 4.711935 5.956626 6.413453 5.205439 5.761773 6.791201 6.655051 7.375246 7.581978 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.21938 6.484486 5.528374 6.059191 5.546655 6.982674 5.820913 6.335359 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.354215 3.133956 4.705973 4.900633 4.970266 4.92206 5.677358 4.371984 4.542395 5.017689 CE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.373747 3.409697 2.522778 2.764685 2.76772675 2.098598 3.6672 4.151408 3.191899 3.370604 3.261874 3.650041 2.746843 2.757824 3.147802 3.026094 3.319963 3.499379 3.624143 2.974847 3.760281 3.458109 3.978402 3.203437 3.535234 3.676006 5.186226 1.872781 3.698456 3.876162 2.636829 2.753817 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.894328 3.047952 2.942893 3.04249 2.960935 3.319318 2.980597 3.057197 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.207386 1.96478 3.048102 2.713727 3.291389 2.818532 3.735925 2.69414 2.777901 2.8486 PE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.31901 11.68516 14.93038 14.95011 13.721165 12.08262 14.71727 19.12129 16.5109 13.93843 15.71954 16.83195 11.60913 11.32087 14.60821 13.01064 12.86576 14.14383 16.71051 12.90673 15.29 14.59413 12.84609 14.6472 11.2426 11.0656 10.50611 10.24487 11.47475 11.97973 10.84418 11.20539 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.38343 14.74388 13.22702 14.27045 12.15538 16.18004 13.81336 15.0176 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.24491 9.179545 13.27939 13.4573 14.26693 13.78099 13.37346 12.49934 13.58699 14.89479 LPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 1.985336 3.587187 3.512746 2.229119 2.828597 2.376541 10.12079 4.001 12.57522 3.015267 2.843744 3.824854 3.313661 1.713902 4.066705 2.283039 2.141127 2.25878 2.578141 2.29802 2.226648 3.580908 2.284835 2.062072 2.212778 2.354884 2.374694 1.733888 2.424483 2.744589 2.061165 2.093544 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.569523 3.48271 2.912659 2.993091 2.396099 3.92955 2.688695 2.990434 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.445049 1.414673 2.342518 2.236741 2.387568 2.253719 2.29485 2.256921 2.30453 2.413952 PC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.43064 13.72721 19.77146 20.79825 18.18189 17.06546 16.44851 30.14924 17.9391 22.95961 26.48176 27.6631 15.75915 15.77591 21.67218 18.88794 21.56993 21.89988 25.05193 19.41482 24.44903 23.90031 20.51984 21.51287 22.14274 20.13373 21.3557 17.0815 21.1864 20.57437 19.90721 22.65038 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.26998 22.22052 21.84318 22.17756 25.67418 27.47849 26.47858 29.02569 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.77021 13.56442 18.99005 19.4989 19.5686 20.6393 19.01215 17.95483 18.89013 21.34138 total FA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 154.3317 185.2361 168.1752 251.4556 189.79965 140.7847 232.6057 264.9508 215.8696 226.0595 212.4494 246.5769 135.9659 128.6336 171.9046 145.1712 145.418825 165.9092 182.8791 153.5055 170.946 246.2577 196.0287 155.2156 174.5598 155.1475 155.7252 135.0911 157.645 157.981 137.0467 148.0066 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 165.5336 160.078 155.028 153.2675 173.211 191.9855 182.6532 190.9097 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 184.4204 128.2146 178.5828 201.6631 214.7581 178.7939 198.4025 173.9663 171.7586 182.5038 SFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.56734 58.89104 61.76015 82.99891 64.30436 49.88279 32.54035 74.40389 24.48528 58.62226 59.325 59.49236 42.67827 47.77448 56.5741 50.32287 49.33743 59.05086 65.13467 52.92668 61.51322 78.46966 71.576 57.31265 60.8269 53.30843 51.87406 47.32892 52.17337 53.2607 46.82604 51.61034 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 59.92835 57.45874 56.56307 58.38036 54.16209 58.30152 56.20181 62.54207 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.49966 28.26706 37.8818 49.56224 49.98656 37.13381 41.38633 38.70865 32.57565 35.13793 UFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.7644 126.3451 106.4151 168.4567 125.495325 90.90195 200.0653 190.5469 191.3843 167.4373 153.1244 187.0845 93.28764 80.85912 115.3305 94.84834 96.0814 106.8583 117.7445 100.5789 109.4328 167.788 124.4527 97.90292 113.7329 101.8391 103.8511 87.76216 105.4716 104.7203 90.22065 96.39628 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 105.6052 102.6193 98.46492 94.88719 119.0489 133.684 126.4514 128.3677 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 119.7139 84.53165 117.9778 134.9055 142.6471 116.9949 132.7574 115.065 108.7687 116.7669 MUFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.28231 49.81249 35.7885 69.64348 48.381695 32.48282 101.8587 88.80986 97.40171 83.58284 67.42692 89.24808 33.97854 24.76989 48.02497 32.88595 34.9148375 36.53009 41.66145 36.21559 35.78132 80.82412 45.60098 33.18519 49.45579 36.06272 36.66937 36.36197 37.60285 36.58757 34.58414 37.63326 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.33318 34.06948 34.28381 29.02538 49.8542 52.47811 49.28278 48.60563 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 64.70657 43.68294 60.60502 66.75759 72.11104 61.79901 65.64517 58.90138 62.98993 65.73688 PUFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 62.48205 76.53256 70.62658 98.81319 77.113595 58.41912 98.20665 101.7371 93.98264 83.85441 85.6975 97.83641 59.3091 56.08923 67.30548 61.96239 61.16655 70.32821 76.08302 64.36326 73.65148 86.96388 78.85175 64.71773 64.2771 65.77638 67.18175 51.4002 67.86878 68.13276 55.63651 58.76301 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.27202 68.5498 64.18111 65.86181 69.19471 81.20592 77.16863 79.76203 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.21419 56.26459 80.09601 85.34324 92.66052 79.86106 91.37105 76.3563 76.193 81.62895 TG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.19814 12.01032 10.75409 14.73858 12.17296 11.57527 9.819244 10.72271 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.401133 7.859552 10.48678 8.634265 14.9345 14.48264 17.30995 16.25679 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Acetate NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.36574 39.41539 30.16777 24.87761 41.76824 52.33333 37.97345 26.64307 47.45042 31.90559 26.17154 37.39346 38.78609 41.42647 38.97368 31.41766 44.15924 43.84396 34.03008 35.56779 28.11119 33.35196 36.14776 36.18 23.48727 25.23273 17.25818 24.88364 19.60364 12.55091 16.94182 12.67091 0.3444109 0.3467422 0.508772 0.5242321 0.2711864 0.3680982 0.3242424 0.6138614 0.6503226 0.6513158 0.87 0.9263844 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Propionate NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.808765 8.763956 5.61327 5.281024 10.40601 9.935898 7.51349 6.478465 8.984874 7.242236 5.266533 6.647664 10.26587 10.27466 8.36449 8.021489 9.938216 8.332759 11.2388 9.08004 9.530921 9.71709 9.972921 9.870309 4.429091 3.698182 3.354545 4.298182 5.007273 3.501818 3.267273 2.492727 0.05438067 0.006798867 0.01403509 0.02457338 0.01694915 0.02208589 0.01212121 0.03564356 0.07354838 0.06315789 0.07333333 0.1563518 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Butyrate NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.619124 7.98066 6.338388 6.767591 10.58112 15.61282 9.815846 6.373561 17.76303 10.61615 8.65491 11.95794 11.30478 11.05656 8.755714 8.209149 9.598089 9.965948 7.140249 7.776285 5.800658 7.70716 6.165672 6.543093 5.007273 6.987273 4.216363 5.481818 4.32 2.252727 3.016364 2.46 0.05075529 0.05779037 0.03859649 0.08600683 0.02372881 0.06625767 0.05454546 0.1861386 0.1587097 0.1855263 0.07666667 0.07035831 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA Urine hippurate NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.005303 0.005071 0.00531 0.006493 0.005804 0.005314 0.005726 0.004861 0.006596 0.006958 0.005755 0.005607 0.004376 0.007388 0.00583 0.006907 0.00711 0.006283 0.005844 0.004702 0.005352 0.004868 0.003813 0.004774 NA NA NA NA NA NA NA NA NA NA Urine indoxyl sulfate NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.002918 0.002793 0.002891 0.002784 0.002709 0.003415 0.002627 0.002583 0.003198 0.003397 0.00345 0.002858 0.003487 0.003792 0.003982 0.003537 0.003491 0.003769 0.002981 0.002865 0.002922 0.003023 0.002119 0.00262 NA NA NA NA NA NA NA NA NA NA NMR_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name PubChem ID Glucose 5793 Glycogen 439177 UDP-glucose 8629 TC 23957 FC 18218231 CE 23974 PE NA LPC NA PC NA total FA NA SFA 5388925 UFA NA MUFA NA PUFA NA TG 2723601 Acetate 175 Propionate 104745 Butyrate 264 Urine hippurate NA Urine indoxyl sulfate NA METABOLITES_END #END