#METABOLOMICS WORKBENCH iuk41_20240328_131847 DATATRACK_ID:4750 STUDY_ID:ST003150 ANALYSIS_ID:AN005168 PROJECT_ID:PR001958 VERSION 1 CREATED_ON March 29, 2024, 11:56 am #PROJECT PR:PROJECT_TITLE Impact of early-life exposure to a potent aryl hydrocarbon receptor ligand on PR:PROJECT_TITLE gut microbiota and host glucose homeostasis in C57BL/6J male mice PR:PROJECT_SUMMARY This study aimed to explore the association between early-life exposure to a PR:PROJECT_SUMMARY potent aryl hydrocarbon receptor (AHR) agonist and persistent disruptions in the PR:PROJECT_SUMMARY microbiota, leading to impaired metabolic homeostasis later in life. This study PR:PROJECT_SUMMARY utilized metagenomics, NMR- and mass spectrometry-based metabolomics, and PR:PROJECT_SUMMARY biochemical assays to analyze the gut microbiome composition and function, as PR:PROJECT_SUMMARY well as the physiological and metabolic effects of early-life exposure to PR:PROJECT_SUMMARY 2,3,7,8-tetrachlorodibenzofuran (TCDF) in conventional, germ-free (GF), and PR:PROJECT_SUMMARY Ahr-null mice. The impact of TCDF on Akkermansia muciniphila (A. muciniphila) in PR:PROJECT_SUMMARY vitro was assessed using optical density (OD 600), flow cytometry, PR:PROJECT_SUMMARY transcriptomics, and mass spectrometry-based metabolomics. TCDF-exposed mice PR:PROJECT_SUMMARY exhibited disruption in the gut microbiome community structure and function, PR:PROJECT_SUMMARY characterized by lower abundances of A. muciniphila, lower levels of cecal short PR:PROJECT_SUMMARY chain fatty acids (SCFAs) and indole-3-lactic acid (ILA), and a reduction in gut PR:PROJECT_SUMMARY hormones GLP-1 and PYY. Importantly, microbial and metabolic phenotypes PR:PROJECT_SUMMARY associated with early-life POP exposure were transferable to GF recipients in PR:PROJECT_SUMMARY the absence of POP carry-over. In addition, AHR-independent interactions between PR:PROJECT_SUMMARY POPs and the microbiota were observed, significantly affected the growth, PR:PROJECT_SUMMARY physiology, gene expression, and metabolic activity of A. muciniphila, resulting PR:PROJECT_SUMMARY in suppressed activity along the ILA pathway. PR:INSTITUTE Penn State University PR:DEPARTMENT Department of Veterinary and Biomedical Sciences PR:LAST_NAME Koo PR:FIRST_NAME Imhoi PR:ADDRESS 307B Life Science Building PR:EMAIL iuk41@psu.edu PR:PHONE 18148657803 #STUDY ST:STUDY_TITLE Impact of early-life exposure to a potent aryl hydrocarbon receptor ligand on ST:STUDY_TITLE gut microbiota and host glucose homeostasis in C57BL/6J male mice (Part II) ST:STUDY_SUMMARY This study aimed to explore the association between early-life exposure to a ST:STUDY_SUMMARY potent aryl hydrocarbon receptor (AHR) agonist and persistent disruptions in the ST:STUDY_SUMMARY microbiota, leading to impaired metabolic homeostasis later in life. This study ST:STUDY_SUMMARY utilized metagenomics, NMR- and mass spectrometry-based metabolomics, and ST:STUDY_SUMMARY biochemical assays to analyze the gut microbiome composition and function, as ST:STUDY_SUMMARY well as the physiological and metabolic effects of early-life exposure to ST:STUDY_SUMMARY 2,3,7,8-tetrachlorodibenzofuran (TCDF) in conventional, germ-free (GF), and ST:STUDY_SUMMARY Ahr-null mice. The impact of TCDF on Akkermansia muciniphila (A. muciniphila) in ST:STUDY_SUMMARY vitro was assessed using optical density (OD 600), flow cytometry, ST:STUDY_SUMMARY transcriptomics, and mass spectrometry-based metabolomics. TCDF-exposed mice ST:STUDY_SUMMARY exhibited disruption in the gut microbiome community structure and function, ST:STUDY_SUMMARY characterized by lower abundances of A. muciniphila, lower levels of cecal short ST:STUDY_SUMMARY chain fatty acids (SCFAs) and indole-3-lactic acid (ILA), and a reduction in gut ST:STUDY_SUMMARY hormones GLP-1 and PYY. Importantly, microbial and metabolic phenotypes ST:STUDY_SUMMARY associated with early-life POP exposure were transferable to GF recipients in ST:STUDY_SUMMARY the absence of POP carry-over. In addition, AHR-independent interactions between ST:STUDY_SUMMARY POPs and the microbiota were observed, significantly affected the growth, ST:STUDY_SUMMARY physiology, gene expression, and metabolic activity of A. muciniphila, resulting ST:STUDY_SUMMARY in suppressed activity along the ILA pathway. ST:INSTITUTE Penn State University ST:DEPARTMENT Department of Veterinary and Biomedical Sciences ST:LAST_NAME Koo ST:FIRST_NAME Imhoi ST:ADDRESS 307B Life Science Building ST:EMAIL iuk41@psu.edu ST:PHONE 8148107425 #SUBJECT SU:SUBJECT_TYPE Mammal SU:SUBJECT_SPECIES Mus musculus SU:TAXONOMY_ID 10090 SU:AGE_OR_AGE_RANGE 4 weeks to 5 months SU:GENDER Male #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS YT200819_02 YT200819_02 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_02.CDF SUBJECT_SAMPLE_FACTORS YT200819_03 YT200819_03 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_03.CDF SUBJECT_SAMPLE_FACTORS YT200819_04 YT200819_04 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_04.CDF SUBJECT_SAMPLE_FACTORS YT200819_05 YT200819_05 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_05.CDF SUBJECT_SAMPLE_FACTORS YT200819_06 YT200819_06 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_06.CDF SUBJECT_SAMPLE_FACTORS YT200819_07 YT200819_07 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_07.CDF SUBJECT_SAMPLE_FACTORS YT200819_08 YT200819_08 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_08.CDF SUBJECT_SAMPLE_FACTORS YT200819_09 YT200819_09 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_09.CDF SUBJECT_SAMPLE_FACTORS YT200819_10 YT200819_10 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_10.CDF SUBJECT_SAMPLE_FACTORS YT200819_11 YT200819_11 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_11.CDF SUBJECT_SAMPLE_FACTORS YT200819_12 YT200819_12 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_12.CDF SUBJECT_SAMPLE_FACTORS YT200819_13 YT200819_13 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_13.CDF SUBJECT_SAMPLE_FACTORS YT200819_21 YT200819_21 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_21.CDF SUBJECT_SAMPLE_FACTORS YT200819_22 YT200819_22 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_22.CDF SUBJECT_SAMPLE_FACTORS YT200819_101 YT200819_101 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_101.CDF SUBJECT_SAMPLE_FACTORS YT200819_102 YT200819_102 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_102.CDF SUBJECT_SAMPLE_FACTORS YT200819_103 YT200819_103 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_103.CDF SUBJECT_SAMPLE_FACTORS YT200819_104 YT200819_104 Sample source:liver | Treatment:vehicle RAW_FILE_NAME=YT200819_104.CDF SUBJECT_SAMPLE_FACTORS YT200819_105 YT200819_105 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_105.CDF SUBJECT_SAMPLE_FACTORS YT200819_106 YT200819_106 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_106.CDF SUBJECT_SAMPLE_FACTORS YT200819_107 YT200819_107 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_107.CDF SUBJECT_SAMPLE_FACTORS YT200819_108 YT200819_108 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_108.CDF SUBJECT_SAMPLE_FACTORS YT200819_109 YT200819_109 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_109.CDF SUBJECT_SAMPLE_FACTORS YT200819_110 YT200819_110 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT200819_110.CDF SUBJECT_SAMPLE_FACTORS YT201026_14 YT201026_14 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT201026_14.CDF SUBJECT_SAMPLE_FACTORS YT201026_15 YT201026_15 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT201026_15.CDF SUBJECT_SAMPLE_FACTORS YT201026_16 YT201026_16 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT201026_16.CDF SUBJECT_SAMPLE_FACTORS YT201026_17 YT201026_17 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT201026_17.CDF SUBJECT_SAMPLE_FACTORS YT201026_18 YT201026_18 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT201026_18.CDF SUBJECT_SAMPLE_FACTORS YT201026_19 YT201026_19 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT201026_19.CDF SUBJECT_SAMPLE_FACTORS YT210427_16 YT210427_16 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT210427_16.CDF SUBJECT_SAMPLE_FACTORS YT210427_17 YT210427_17 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT210427_17.CDF SUBJECT_SAMPLE_FACTORS YT210427_18 YT210427_18 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT210427_18.CDF SUBJECT_SAMPLE_FACTORS YT210427_19 YT210427_19 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT210427_19.CDF SUBJECT_SAMPLE_FACTORS YT210427_20 YT210427_20 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT210427_20.CDF SUBJECT_SAMPLE_FACTORS YT210427_21 YT210427_21 Sample source:liver | Treatment:TCDF RAW_FILE_NAME=YT210427_21.CDF #COLLECTION CO:COLLECTION_SUMMARY Liver tissue samples were collected immediately after sacrifice by carbon CO:COLLECTION_SUMMARY dioxide asphyxiation and kept at -80°C. CO:SAMPLE_TYPE Liver #TREATMENT TR:TREATMENT_SUMMARY 1. After feed training, mice were fed pills containing TCDF (dissolved in TR:TREATMENT_SUMMARY acetone) or acetone alone as vehicle, and one pill uniformly contained 0.46 µg TR:TREATMENT_SUMMARY TCDF (24 µg/kg as final dose). Mice were housed singly in an empty cage and TR:TREATMENT_SUMMARY monitored to ensure the pill was consumed in the morning for 5 days. 2. TCDF (24 TR:TREATMENT_SUMMARY µg/kg) or corn oil as vehicle were administered to age-matched male GF and TR:TREATMENT_SUMMARY Ahr-/- mice by oral gavage once daily for five days (n = 4 per group). 3. TR:TREATMENT_SUMMARY Four-week-old male GF C57BL/6J mice were orally gavaged with 100 µL of cecal TR:TREATMENT_SUMMARY suspension (100 mg in 1 mL sterile BHI CHV media) from vehicle or TCDF treated TR:TREATMENT_SUMMARY mice in long-duration model. 4. A. muciniphila was administered to GF mice by TR:TREATMENT_SUMMARY oral gavage at one dose 107 CFU/0.1 mL suspended in sterile BHI CHV media TR:TREATMENT_SUMMARY containing an end concentration of glycerol (15% vol/vol). #SAMPLEPREP SP:SAMPLEPREP_SUMMARY For liver lipid quantification, 50 mg of liver tissue was homogenized in 1 mL SP:SAMPLEPREP_SUMMARY pre-cooled chloroform/methanol mix [1:1 (v/v)], followed by adding 296 µL SP:SAMPLEPREP_SUMMARY water. After centrifugation (10,000 g, 4°C) for 10 min, the lower phase was SP:SAMPLEPREP_SUMMARY dried in a vacuum and reconstituted in 600 µL of deuterated chloroform SP:SAMPLEPREP_SUMMARY containing 0.03% (v/v) tetramethylsilane (TMS). SP:SAMPLEPREP_PROTOCOL_FILENAME PSU_Methyl_esterification_GCMS_032724.pdf #CHROMATOGRAPHY CH:CHROMATOGRAPHY_TYPE GC CH:INSTRUMENT_NAME Agilent 7890A CH:COLUMN_NAME Restek Rtx-5Sil MS (30m x 0.25mm, 0.25um) CH:SOLVENT_A N/A CH:SOLVENT_B N/A CH:FLOW_GRADIENT N/A CH:FLOW_RATE 0.5658 mL/min CH:COLUMN_TEMPERATURE 325 #ANALYSIS AN:ANALYSIS_TYPE MS AN:ANALYSIS_PROTOCOL_FILE PSU_tissue_POP_measurement_GCMS_032724.pdf #MS MS:INSTRUMENT_NAME Agilent 5975C MS:INSTRUMENT_TYPE Single quadrupole MS:MS_TYPE EI MS:ION_MODE POSITIVE MS:MS_COMMENTS For ionization, the EI source was used with the following settings: filament MS:MS_COMMENTS source temperature at 230 °C and electron ionization energy at 70 eV. Mass MS:MS_COMMENTS spectra were collected in a mass range of m/z 50 - 600 at a scan rate of 2 MS:MS_COMMENTS spectra/s. Mass calibration was performed after every injection with internal MS:MS_COMMENTS reference masses m/z 68.9947, 263.9866 and 501.9706. Data acquisition was MS:MS_COMMENTS performed using the Agilent MassHunter Workstation GC-MS Data Acquisition v 10.0 MS:MS_COMMENTS (Agilent Technologies, Waldbronn, Germany). #MS_METABOLITE_DATA MS_METABOLITE_DATA:UNITS peak area MS_METABOLITE_DATA_START Samples YT201026_14 YT201026_15 YT201026_16 YT201026_17 YT201026_18 YT201026_19 YT210427_16 YT210427_17 YT210427_18 YT210427_19 YT210427_20 YT210427_21 YT200819_02 YT200819_03 YT200819_04 YT200819_05 YT200819_06 YT200819_07 YT200819_08 YT200819_09 YT200819_10 YT200819_11 YT200819_12 YT200819_13 YT200819_21 YT200819_22 YT200819_101 YT200819_102 YT200819_103 YT200819_104 YT200819_105 YT200819_106 YT200819_107 YT200819_108 YT200819_109 YT200819_110 Factors Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:vehicle Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF Sample source:liver | Treatment:TCDF TCDF 0.231168 0.154591 0.081734 0.074493 0.139774 0.1 0 0 0 0 0 0 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A C16:0 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.714356 9.109897 10.4442 9.076806 6.502155 10.12332 14.29972 9.591216 9.406372 14.98615 12.9385 14.97875 6.621081 7.273706 8.110182 7.866466 7.46785875 8.355032 9.493909 8.237781 7.313237 7.503699 8.570585 7.962943 C18:0 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.017603 4.540166 5.985824 5.727115 4.642378 6.064295 8.217515 5.850448 5.52072 8.382533 7.859274 8.854275 4.522949 4.601932 4.725817 4.443347 4.57351125 4.813667 6.064409 5.742851 4.769916 4.56904 4.630344 4.843543 C20:0 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.254823 0.108724 0.221872 0.217146 0.116565 0.241748 0.385404 0.230283 0.280408 0.394579 0.293472 0.390559 0.1820141 0.161377 0.201303 0.149316 0.173502525 0.195993 0.192734 0.47069 0.270261 0.260266 0.308677 0.282657 C22:0 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.411161 0.140726 0.250938 0.324135 0.152745 0.279568 0.509807 0.360928 0.409804 0.435558 0.302404 0.446042 0.17899 0.185431 0.232172 0.196098 0.19817275 0.193019 0.246087 0.42677 0.360714 0.277184 0.289124 0.307164 C16:1 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.307017 0.396873 0.253792 0.103565 0.133489 0.273937 0.655933 0.393816 0.440213 0.562749 0.543906 0.63114 0.199829 0.177241 0.333917 0.299978 0.25274125 0.403835 0.372302 0.291641 0.288244 0.325352 0.536589 0.291749 C18:1n9c N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.765205 4.116987 4.942037 3.306199 2.853414 4.294367 10.8908 4.736905 6.205129 11.15688 8.282143 11.29047 2.863554 2.768324 3.488835 3.407728 3.13211025 3.179089 4.217233 3.333326 2.834725 3.990053 3.596399 3.036793 C18:1n9t N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.462033 0.325371 0.354513 0.232263 0.229115 0.44264 0.733317 0.351766 0.557657 1.083112 0.881167 1.137568 0.243778 0.210788 0.288425 0.307486 0.26261925 0.350553 0.415015 0.248542 0.276078 0.454936 0.386068 0.229469 C18:2n6c N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.237328 4.607274 6.777583 5.306724 3.729595 5.787339 11.10535 6.16135 6.693592 10.55787 9.587518 12.39909 3.781076 4.22695 4.457052 4.425214 4.222573 4.688378 6.18487 5.600456 4.110624 4.68588 4.268127 4.705901 C20:3n6 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.293287 0.180116 0.171638 0.182365 0.182672 0.291583 0.553868 0.212256 0.421617 0.745912 0.759214 0.912221 0.289723 0.215301 0.363198 0.284193 0.28810375 0.314659 0.43487 0.323408 0.30834 0.39283 0.377142 0.324264 C20:4n6 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.736463 1.503002 2.096839 2.007292 1.431748 2.752923 2.866362 1.941899 1.916765 3.323658 3.367212 3.854757 1.904886 2.017933 2.04906 1.897615 1.9673735 2.145538 2.687853 2.584469 2.023868 2.454301 2.20458 2.126906 C20:5n3 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.246837 0.14886 0.217684 0.119579 0.124146 0.149129 0.197877 0.142309 0.179085 0.230901 0.203923 0.223852 0.185128 0.146787 0.172943 0.216656 0.1803785 0.179263 0.262064 0.234519 0.252109 0.154614 0.141463 0.263216 C22:6n3 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.017069 1.7347 2.215918 2.284509 1.451863 2.322459 3.179898 2.553364 2.220038 3.888389 3.463768 4.146459 1.98433 2.047307 2.334741 2.113849 2.12005675 2.280213 3.039368 2.872819 2.177372 2.278205 2.039791 2.497095 MS_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name retention index PubChem ID TCDF N/A 39929 C16:0 N/A 985 C18:0 N/A 5281 C20:0 N/A 10467 C22:0 N/A 8215 C16:1 N/A C18:1n9c N/A C18:1n9t N/A C18:2n6c N/A C20:3n6 N/A C20:4n6 N/A C20:5n3 N/A C22:6n3 N/A METABOLITES_END #END