#METABOLOMICS WORKBENCH jaredmayers_20240426_133747 DATATRACK_ID:4794 STUDY_ID:ST003186 ANALYSIS_ID:AN005234 PROJECT_ID:PR001807
VERSION             	1
CREATED_ON             	April 29, 2024, 12:00 pm
#PROJECT
PR:PROJECT_TITLE                 	A metabolomics pipeline highlights microbial metabolism in bloodstream
PR:PROJECT_TITLE                 	infections - untargeted metabolomics on mouse model of cecal slurry (CS)
PR:PROJECT_SUMMARY               	untargeted metabolomics on plasma from male B6 mice 24hrs after IP injection of
PR:PROJECT_SUMMARY               	PBS, heat killed cecal slurry, or live cecal slurry
PR:INSTITUTE                     	Harvard University
PR:LAST_NAME                     	Mayers
PR:FIRST_NAME                    	Jared
PR:ADDRESS                       	12 Oxford St Conant 200S, Cambridge, MA, 02138, USA
PR:EMAIL                         	jrmayers@gmail.com
PR:PHONE                         	4259417747
#STUDY
ST:STUDY_TITLE                   	CS Large Group
ST:STUDY_SUMMARY                 	untargeted metabolomics on plasma from male B6 mice 24hrs after IP injection of
ST:STUDY_SUMMARY                 	PBS, heat killed cecal slurry, or live cecal slurry
ST:INSTITUTE                     	Harvard University
ST:LAST_NAME                     	Mayers
ST:FIRST_NAME                    	Jared
ST:ADDRESS                       	12 Oxford St Conant 200S Cambridge, MA 02138
ST:EMAIL                         	jrmayers@gmail.com
ST:PHONE                         	4259417747
#SUBJECT
SU:SUBJECT_TYPE                  	Mammal
SU:SUBJECT_SPECIES               	Mus musculus
SU:TAXONOMY_ID                   	10090
#SUBJECT_SAMPLE_FACTORS:         	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data
SUBJECT_SAMPLE_FACTORS           	-	24hr_1	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_1
SUBJECT_SAMPLE_FACTORS           	-	24hr_2	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_2
SUBJECT_SAMPLE_FACTORS           	-	24hr_3	Factor:Live | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_3
SUBJECT_SAMPLE_FACTORS           	-	24hr_4	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_4
SUBJECT_SAMPLE_FACTORS           	-	24hr_5	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_5
SUBJECT_SAMPLE_FACTORS           	-	24hr_6	Factor:Live | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_6
SUBJECT_SAMPLE_FACTORS           	-	24hr_7	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_7
SUBJECT_SAMPLE_FACTORS           	-	24hr_8	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_8
SUBJECT_SAMPLE_FACTORS           	-	24hr_10	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_10
SUBJECT_SAMPLE_FACTORS           	-	24hr_11	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_11
SUBJECT_SAMPLE_FACTORS           	-	24hr_12	Factor:Live | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_12
SUBJECT_SAMPLE_FACTORS           	-	24hr_13	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_13
SUBJECT_SAMPLE_FACTORS           	-	24hr_14	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_14
SUBJECT_SAMPLE_FACTORS           	-	24hr_16	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_16
SUBJECT_SAMPLE_FACTORS           	-	24hr_17	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_17
SUBJECT_SAMPLE_FACTORS           	-	24hr_19	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_19
SUBJECT_SAMPLE_FACTORS           	-	24hr_22	Factor:Control | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_22
SUBJECT_SAMPLE_FACTORS           	-	24hr_23	Factor:Heat Killed | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_23
SUBJECT_SAMPLE_FACTORS           	-	24hr_24	Factor:Live | Sample source:Plasma	RAW_FILE_NAME(File Name)=24hr_24
#COLLECTION
CO:COLLECTION_SUMMARY            	Plasma samples from terminal bleed via cardiac puncture under anesthesia
CO:SAMPLE_TYPE                   	Blood (plasma)
#TREATMENT
TR:TREATMENT_SUMMARY             	IP injection with either PBS, heat killed cecal slurry or live cecal slurry
TR:TREATMENT_SUMMARY             	24hrs prior to blood draw
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY            	1 part plasma with 9 parts 75:25:0.2 ACN:MetOH:Formic Acid with internal val-d8
SP:SAMPLEPREP_SUMMARY            	and phe-d8 standards; vortexed, centrifuged, supernatant removed and run on
SP:SAMPLEPREP_SUMMARY            	LC-MS
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE           	HILIC
CH:INSTRUMENT_NAME               	Agilent 1260 Infinity HPLC
CH:COLUMN_NAME                   	Waters Atlantis HILIC (150 x 2.1mm,3um)
CH:SOLVENT_A                     	100% water; 0.1% formic acid
CH:SOLVENT_B                     	100% acetonitrile; 0.1% formic acid
CH:FLOW_GRADIENT                 	0.5 minute at 5% mobile phase B followed by a linear gradient to 40% mobile
CH:FLOW_GRADIENT                 	phase B over 10 minutes
CH:FLOW_RATE                     	250 μL/min
CH:COLUMN_TEMPERATURE            	30
#ANALYSIS
AN:ANALYSIS_TYPE                 	MS
#MS
MS:INSTRUMENT_NAME               	Agilent 6530 QTOF
MS:INSTRUMENT_TYPE               	QTOF
MS:MS_TYPE                       	ESI
MS:ION_MODE                      	POSITIVE
MS:MS_COMMENTS                   	Raw data from the LC–MS were analyzed using Agilent MassHunter Qualitative
MS:MS_COMMENTS                   	Analysis 10.0 software.
MS:MS_RESULTS_FILE               	ST003186_AN005234_Results.txt	UNITS:ion counts	Has m/z:Yes	Has RT:Yes	RT units:Minutes
#END