#METABOLOMICS WORKBENCH jravilap_20250815_114739 DATATRACK_ID:6297 STUDY_ID:ST004133 ANALYSIS_ID:AN006852 PROJECT_ID:PR002599 VERSION 1 CREATED_ON August 20, 2025, 9:18 am #PROJECT PR:PROJECT_TITLE Portal Vein Enriched Metabolites as Intermediate Regulators of the Gut PR:PROJECT_TITLE Microbiome in Insulin Resistance PR:PROJECT_SUMMARY Diet and obesity significantly contribute to insulin resistance and type 2 PR:PROJECT_SUMMARY diabetes, in part via the gut microbiome. To explore the role of gut-derived PR:PROJECT_SUMMARY metabolites on host metabolism, we assessed portal/peripheral blood metabolites PR:PROJECT_SUMMARY in mice with different risks of obesity/diabetes challenged with high-fat diet PR:PROJECT_SUMMARY (HFD) +/- antibiotics. In diabetes/obesity-prone C57Bl/6J mice, 111 were PR:PROJECT_SUMMARY portally-enriched and 74 were peripherally-enriched, many of which differed in PR:PROJECT_SUMMARY metabolic-syndrome-resistant 129S1/129S6 mice. Vancomycin treatment of HFD-fed PR:PROJECT_SUMMARY C57Bl/6J mice modified the microbiome and portal/peripheral ratio of many PR:PROJECT_SUMMARY metabolites, including upregulating multiple TCA cycle-related metabolites, like PR:PROJECT_SUMMARY mesaconate, in portal blood. Treatment of hepatocytes in vitro with mesaconate PR:PROJECT_SUMMARY and its isomers (itaconate, citraconate) improved insulin signaling and PR:PROJECT_SUMMARY transcriptionally regulated genes involved in gluconeogenesis, fatty acid PR:PROJECT_SUMMARY oxidation and lipogenesis both in vitro and in vivo. Thus, portal vs. peripheral PR:PROJECT_SUMMARY metabolites play important roles in mediating effects of the microbiome on PR:PROJECT_SUMMARY hepatic metabolism and the pathogenesis of HFD-related insulin resistance. This PR:PROJECT_SUMMARY data deposition contains two studies: one assessing the role of diet and the PR:PROJECT_SUMMARY microbiome on portal metabolites, and another estimating the role of genetic PR:PROJECT_SUMMARY background on portal-enriched metabolites. PR:INSTITUTE Broad Institute of MIT and Harvard PR:DEPARTMENT Metabolomics Platform PR:LAST_NAME Kahn PR:FIRST_NAME Ronald PR:ADDRESS One Joslin Place, Boston, MA 02215 PR:EMAIL c.ronald.kahn@joslin.harvard.edu PR:PHONE (617) 309-2635 PR:FUNDING_SOURCE R01DK121967, R01DK031036, R01DK128429, P30DK036836 (to Joslin Diabetes Center), PR:FUNDING_SOURCE the Mary K. Iacocca Professorship (to C.R.K), and the FAPESP Process No.: PR:FUNDING_SOURCE 2022/05957-0 PR:PROJECT_COMMENTS Two part study (Part 2) PR:CONTRIBUTORS Vitor Rosetto Muñoz, Francois Moreau, Marion Soto, Loc Duyen Pham, Jimmy Zhong, PR:CONTRIBUTORS Sam Zimmerman, Bruna B. Brandao, Khyati Girdhar, Julian Avila, Hui Pan, Jonathan PR:CONTRIBUTORS Dreyfuss, Emrah Altindis, Aleksandar Kostic, Clary B. Clish, C. Ronald Kahn #STUDY ST:STUDY_TITLE Metabolite profiling of portal and cardiac puncture plasma in C57Bl6 mice ST:STUDY_TITLE treated with Vancomycin or Metronidazole under a regular or high fat diet. ST:STUDY_SUMMARY In obesity- and diabetes-prone C57Bl/6J (B6J) mice, high-fat diet (HFD) feeding ST:STUDY_SUMMARY induces weight gain, insulin resistance, and glucose intolerance. In this study ST:STUDY_SUMMARY we explore circulating metabolites in this process, LC-MS profiling of portal ST:STUDY_SUMMARY and cardiac blood under chow, HFD, and HFD plus vancomycin or metronidazole ST:STUDY_SUMMARY revealed distinct metabolomic signatures primarily determined by vascular site. ST:STUDY_SUMMARY On chow, portal blood was enriched in lipids, bile acids, amino acids, bacterial ST:STUDY_SUMMARY food-derived metabolites, and TCA cycle intermediates, while cardiac blood was ST:STUDY_SUMMARY enriched in lipids, amino acids, and nucleosides, suggesting ST:STUDY_SUMMARY intestinal/microbial versus hepatic/systemic contributions, respectively. HFD ST:STUDY_SUMMARY reduced the number of portally enriched metabolites, particularly lipids, and ST:STUDY_SUMMARY shifted some lipid species from portal to cardiac enrichment, while also ST:STUDY_SUMMARY increasing pro-inflammatory omega-6 fatty acids and reducing anti-inflammatory ST:STUDY_SUMMARY omega-3s. Antibiotic treatment significantly altered portal and cardiac ST:STUDY_SUMMARY metabolite profiles—vancomycin increased certain primary bile acids and TCA ST:STUDY_SUMMARY cycle metabolites, reduced bacterial-derived bile acids, and shifted enrichment ST:STUDY_SUMMARY patterns for multiple amino acids and lipids; metronidazole induced similar but ST:STUDY_SUMMARY distinct changes. These results highlight strong diet- and microbiome-dependent ST:STUDY_SUMMARY regulation of metabolite distribution between portal and systemic circulation, ST:STUDY_SUMMARY with potential implications for metabolic health. ST:INSTITUTE Broad Institute of MIT and Harvard ST:LAST_NAME Kahn ST:FIRST_NAME Ronald ST:ADDRESS One Joslin Place, Boston, MA 02215 ST:EMAIL c.ronald.kahn@joslin.harvard.edu ST:PHONE (617) 309-2635 #SUBJECT SU:SUBJECT_TYPE Mammal SU:SUBJECT_SPECIES Mus musculus SU:TAXONOMY_ID 10090 SU:GENOTYPE_STRAIN B6J SU:AGE_OR_AGE_RANGE 8 week, 20 weeks at end of treatment SU:GENDER Male SU:ANIMAL_ANIMAL_SUPPLIER B6J from Jackson Laboratory (Bar Harbor, ME) SU:ANIMAL_HOUSING Housed 4 animals per cage SU:ANIMAL_FEED Chow diet (Mouse Diet 9F 5020, PharmaServ) or High fat diet containing 60% fat SU:ANIMAL_FEED by calories (HFD, D12492, Research Diets) #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS - Chow_1_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:60 RAW_FILE_NAME(HILIC-POS)=0060_KAH_Portal_HIL-Chow_1_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0060_KAH_Portal_CMH_Chow_1_CP.raw; RAW_FILE_NAME(C8-POS)=0060_KAH_Portal_LIP-Chow_1_CP.raw; RAW_FILE_NAME(C18-NEG)=0060_KAH_Portal_FFA-Chow_1_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_2_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:36 RAW_FILE_NAME(HILIC-POS)=0035_KAH_Portal_HIL-Chow_2_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0035_KAH_Portal_CMH_Chow_2_CP.raw; RAW_FILE_NAME(C8-POS)=0035_KAH_Portal_LIP-Chow_2_CP.raw; RAW_FILE_NAME(C18-NEG)=0035_KAH_Portal_FFA-Chow_2_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_3_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:45 RAW_FILE_NAME(HILIC-POS)=0044_KAH_Portal_HIL-Chow_3_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0044_KAH_Portal_CMH_Chow_3_CP.raw; RAW_FILE_NAME(C8-POS)=0044_KAH_Portal_LIP-Chow_3_CP.raw; RAW_FILE_NAME(C18-NEG)=0044_KAH_Portal_FFA-Chow_3_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_4_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:64 RAW_FILE_NAME(HILIC-POS)=0064_KAH_Portal_HIL-Chow_4_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0064_KAH_Portal_CMH_Chow_4_CP.raw; RAW_FILE_NAME(C8-POS)=0064_KAH_Portal_LIP-Chow_4_CP.raw; RAW_FILE_NAME(C18-NEG)=0064_KAH_Portal_FFA-Chow_4_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_5_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:56 RAW_FILE_NAME(HILIC-POS)=0056_KAH_Portal_HIL-Chow_5_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0056_KAH_Portal_CMH_Chow_5_CP.raw; RAW_FILE_NAME(C8-POS)=0056_KAH_Portal_LIP-Chow_5_CP.raw; RAW_FILE_NAME(C18-NEG)=0056_KAH_Portal_FFA-Chow_5_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_6_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:63 RAW_FILE_NAME(HILIC-POS)=0063_KAH_Portal_HIL-Chow_6_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0063_KAH_Portal_CMH_Chow_6_CP.raw; RAW_FILE_NAME(C8-POS)=0063_KAH_Portal_LIP-Chow_6_CP.raw; RAW_FILE_NAME(C18-NEG)=0063_KAH_Portal_FFA-Chow_6_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_7_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:61 RAW_FILE_NAME(HILIC-POS)=0061_KAH_Portal_HIL-Chow_7_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0061_KAH_Portal_CMH_Chow_7_CP.raw; RAW_FILE_NAME(C8-POS)=0061_KAH_Portal_LIP-Chow_7_CP.raw; RAW_FILE_NAME(C18-NEG)=0061_KAH_Portal_FFA-Chow_7_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_8_CP Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:42 RAW_FILE_NAME(HILIC-POS)=0041_KAH_Portal_HIL-Chow_8_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0041_KAH_Portal_CMH_Chow_8_CP.raw; RAW_FILE_NAME(C8-POS)=0041_KAH_Portal_LIP-Chow_8_CP.raw; RAW_FILE_NAME(C18-NEG)=0041_KAH_Portal_FFA-Chow_8_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_9_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:39 RAW_FILE_NAME(HILIC-POS)=0038_KAH_Portal_HIL-HFD_9_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0038_KAH_Portal_CMH_HFD_9_CP.raw; RAW_FILE_NAME(C8-POS)=0038_KAH_Portal_LIP-HFD_9_CP.raw; RAW_FILE_NAME(C18-NEG)=0038_KAH_Portal_FFA-HFD_9_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_10_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:35 RAW_FILE_NAME(HILIC-POS)=0034_KAH_Portal_HIL-HFD_10_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0034_KAH_Portal_CMH_HFD_10_CP.raw; RAW_FILE_NAME(C8-POS)=0034_KAH_Portal_LIP-HFD_10_CP.raw; RAW_FILE_NAME(C18-NEG)=0034_KAH_Portal_FFA-HFD_10_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_11_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:57 RAW_FILE_NAME(HILIC-POS)=0057_KAH_Portal_HIL-HFD_11_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0057_KAH_Portal_CMH_HFD_11_CP.raw; RAW_FILE_NAME(C8-POS)=0057_KAH_Portal_LIP-HFD_11_CP.raw; RAW_FILE_NAME(C18-NEG)=0057_KAH_Portal_FFA-HFD_11_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_12_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:34 RAW_FILE_NAME(HILIC-POS)=0033_KAH_Portal_HIL-HFD_12_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0033_KAH_Portal_CMH_HFD_12_CP.raw; RAW_FILE_NAME(C8-POS)=0033_KAH_Portal_LIP-HFD_12_CP.raw; RAW_FILE_NAME(C18-NEG)=0033_KAH_Portal_FFA-HFD_12_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_13_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:46 RAW_FILE_NAME(HILIC-POS)=0045_KAH_Portal_HIL-HFD_13_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0045_KAH_Portal_CMH_HFD_13_CP.raw; RAW_FILE_NAME(C8-POS)=0045_KAH_Portal_LIP-HFD_13_CP.raw; RAW_FILE_NAME(C18-NEG)=0045_KAH_Portal_FFA-HFD_13_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_14_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:51 RAW_FILE_NAME(HILIC-POS)=0051_KAH_Portal_HIL-HFD_14_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0051_KAH_Portal_CMH_HFD_14_CP.raw; RAW_FILE_NAME(C8-POS)=0051_KAH_Portal_LIP-HFD_14_CP.raw; RAW_FILE_NAME(C18-NEG)=0051_KAH_Portal_FFA-HFD_14_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_15_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:62 RAW_FILE_NAME(HILIC-POS)=0062_KAH_Portal_HIL-HFD_15_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0062_KAH_Portal_CMH_HFD_15_CP.raw; RAW_FILE_NAME(C8-POS)=0062_KAH_Portal_LIP-HFD_15_CP.raw; RAW_FILE_NAME(C18-NEG)=0062_KAH_Portal_FFA-HFD_15_CP.raw SUBJECT_SAMPLE_FACTORS - HFD_16_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:41 RAW_FILE_NAME(HILIC-POS)=0040_KAH_Portal_HIL-HFD_16_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0040_KAH_Portal_CMH_HFD_16_CP.raw; RAW_FILE_NAME(C8-POS)=0040_KAH_Portal_LIP-HFD_16_CP.raw; RAW_FILE_NAME(C18-NEG)=0040_KAH_Portal_FFA-HFD_16_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_17_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:48 RAW_FILE_NAME(HILIC-POS)=0047_KAH_Portal_HIL-Vanco_17_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0047_KAH_Portal_CMH_Vanco_17_CP.raw; RAW_FILE_NAME(C8-POS)=0047_KAH_Portal_LIP-Vanco_17_CP.raw; RAW_FILE_NAME(C18-NEG)=0047_KAH_Portal_FFA-Vanco_17_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_18_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:37 RAW_FILE_NAME(HILIC-POS)=0036_KAH_Portal_HIL-Vanco_18_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0036_KAH_Portal_CMH_Vanco_18_CP.raw; RAW_FILE_NAME(C8-POS)=0036_KAH_Portal_LIP-Vanco_18_CP.raw; RAW_FILE_NAME(C18-NEG)=0036_KAH_Portal_FFA-Vanco_18_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_19_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:40 RAW_FILE_NAME(HILIC-POS)=0039_KAH_Portal_HIL-Vanco_19_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0039_KAH_Portal_CMH_Vanco_19_CP.raw; RAW_FILE_NAME(C8-POS)=0039_KAH_Portal_LIP-Vanco_19_CP.raw; RAW_FILE_NAME(C18-NEG)=0039_KAH_Portal_FFA-Vanco_19_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_21_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:44 RAW_FILE_NAME(HILIC-POS)=0043_KAH_Portal_HIL-Vanco_21_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0043_KAH_Portal_CMH_Vanco_21_CP.raw; RAW_FILE_NAME(C8-POS)=0043_KAH_Portal_LIP-Vanco_21_CP.raw; RAW_FILE_NAME(C18-NEG)=0043_KAH_Portal_FFA-Vanco_21_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_22_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:59 RAW_FILE_NAME(HILIC-POS)=0059_KAH_Portal_HIL-Vanco_22_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0059_KAH_Portal_CMH_Vanco_22_CP.raw; RAW_FILE_NAME(C8-POS)=0059_KAH_Portal_LIP-Vanco_22_CP.raw; RAW_FILE_NAME(C18-NEG)=0059_KAH_Portal_FFA-Vanco_22_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_23_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:49 RAW_FILE_NAME(HILIC-POS)=0048_KAH_Portal_HIL-Vanco_23_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0048_KAH_Portal_CMH_Vanco_23_CP.raw; RAW_FILE_NAME(C8-POS)=0048_KAH_Portal_LIP-Vanco_23_CP.raw; RAW_FILE_NAME(C18-NEG)=0048_KAH_Portal_FFA-Vanco_23_CP.raw SUBJECT_SAMPLE_FACTORS - Vanco_24_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:54 RAW_FILE_NAME(HILIC-POS)=0054_KAH_Portal_HIL-Vanco_24_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0054_KAH_Portal_CMH_Vanco_24_CP.raw; RAW_FILE_NAME(C8-POS)=0054_KAH_Portal_LIP-Vanco_24_CP.raw; RAW_FILE_NAME(C18-NEG)=0054_KAH_Portal_FFA-Vanco_24_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_25_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:47 RAW_FILE_NAME(HILIC-POS)=0046_KAH_Portal_HIL-Metro_25_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0046_KAH_Portal_CMH_Metro_25_CP.raw; RAW_FILE_NAME(C8-POS)=0046_KAH_Portal_LIP-Metro_25_CP.raw; RAW_FILE_NAME(C18-NEG)=0046_KAH_Portal_FFA-Metro_25_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_26_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:52 RAW_FILE_NAME(HILIC-POS)=0052_KAH_Portal_HIL-Metro_26_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0052_KAH_Portal_CMH_Metro_26_CP.raw; RAW_FILE_NAME(C8-POS)=0052_KAH_Portal_LIP-Metro_26_CP.raw; RAW_FILE_NAME(C18-NEG)=0052_KAH_Portal_FFA-Metro_26_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_27_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:50 RAW_FILE_NAME(HILIC-POS)=0049_KAH_Portal_HIL-Metro_27_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0049_KAH_Portal_CMH_Metro_27_CP.raw; RAW_FILE_NAME(C8-POS)=0049_KAH_Portal_LIP-Metro_27_CP.raw; RAW_FILE_NAME(C18-NEG)=0049_KAH_Portal_FFA-Metro_27_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_28_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:58 RAW_FILE_NAME(HILIC-POS)=0058_KAH_Portal_HIL-Metro_28_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0058_KAH_Portal_CMH_Metro_28_CP.raw; RAW_FILE_NAME(C8-POS)=0058_KAH_Portal_LIP-Metro_28_CP.raw; RAW_FILE_NAME(C18-NEG)=0058_KAH_Portal_FFA-Metro_28_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_29_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:55 RAW_FILE_NAME(HILIC-POS)=0055_KAH_Portal_HIL-Metro_29_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0055_KAH_Portal_CMH_Metro_29_CP.raw; RAW_FILE_NAME(C8-POS)=0055_KAH_Portal_LIP-Metro_29_CP.raw; RAW_FILE_NAME(C18-NEG)=0055_KAH_Portal_FFA-Metro_29_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_30_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:38 RAW_FILE_NAME(HILIC-POS)=0037_KAH_Portal_HIL-Metro_30_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0037_KAH_Portal_CMH_Metro_30_CP.raw; RAW_FILE_NAME(C8-POS)=0037_KAH_Portal_LIP-Metro_30_CP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Metro_31_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:43 RAW_FILE_NAME(HILIC-POS)=0042_KAH_Portal_HIL-Metro_31_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0042_KAH_Portal_CMH_Metro_31_CP.raw; RAW_FILE_NAME(C8-POS)=0042_KAH_Portal_LIP-Metro_31_CP.raw; RAW_FILE_NAME(C18-NEG)=0042_KAH_Portal_FFA-Metro_31_CP.raw SUBJECT_SAMPLE_FACTORS - Metro_32_CP Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:53 RAW_FILE_NAME(HILIC-POS)=0053_KAH_Portal_HIL-Metro_32_CP.raw; RAW_FILE_NAME(HILIC-NEG)=0053_KAH_Portal_CMH_Metro_32_CP.raw; RAW_FILE_NAME(C8-POS)=0053_KAH_Portal_LIP-Metro_32_CP.raw; RAW_FILE_NAME(C18-NEG)=0053_KAH_Portal_FFA-Metro_32_CP.raw SUBJECT_SAMPLE_FACTORS - Chow_1_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:29 RAW_FILE_NAME(HILIC-POS)=0028_KAH_Portal_HIL-Chow_1_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0028_KAH_Portal_CMH_Chow_1_PVP.raw; RAW_FILE_NAME(C8-POS)=0028_KAH_Portal_LIP-Chow_1_PVP.raw; RAW_FILE_NAME(C18-NEG)=0028_KAH_Portal_FFA-Chow_1_PVP.raw SUBJECT_SAMPLE_FACTORS - Chow_2_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:5 RAW_FILE_NAME(HILIC-POS)=0003_KAH_Portal_HIL-Chow_2_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0003_KAH_Portal_CMH_Chow_2_PVP.raw; RAW_FILE_NAME(C8-POS)=Insufficient sample for analysis; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Chow_3_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:13 RAW_FILE_NAME(HILIC-POS)=0012_KAH_Portal_HIL-Chow_3_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0012_KAH_Portal_CMH_Chow_3_PVP.raw; RAW_FILE_NAME(C8-POS)=0012_KAH_Portal_LIP-Chow_3_PVP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Chow_4_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:33 RAW_FILE_NAME(HILIC-POS)=0032_KAH_Portal_HIL-Chow_4_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0032_KAH_Portal_CMH_Chow_4_PVP.raw; RAW_FILE_NAME(C8-POS)=0032_KAH_Portal_LIP-Chow_4_PVP.raw; RAW_FILE_NAME(C18-NEG)=0032_KAH_Portal_FFA-Chow_4_PVP.raw SUBJECT_SAMPLE_FACTORS - Chow_5_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:25 RAW_FILE_NAME(HILIC-POS)=0024_KAH_Portal_HIL-Chow_5_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0024_KAH_Portal_CMH_Chow_5_PVP.raw; RAW_FILE_NAME(C8-POS)=Insufficient sample for analysis; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Chow_6_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:32 RAW_FILE_NAME(HILIC-POS)=0031_KAH_Portal_HIL-Chow_6_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0031_KAH_Portal_CMH_Chow_6_PVP.raw; RAW_FILE_NAME(C8-POS)=0031_KAH_Portal_LIP-Chow_6_PVP.raw; RAW_FILE_NAME(C18-NEG)=0031_KAH_Portal_FFA-Chow_6_PVP.raw SUBJECT_SAMPLE_FACTORS - Chow_7_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:30 RAW_FILE_NAME(HILIC-POS)=0029_KAH_Portal_HIL-Chow_7_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0029_KAH_Portal_CMH_Chow_7_PVP.raw; RAW_FILE_NAME(C8-POS)=0029_KAH_Portal_LIP-Chow_7_PVP.raw; RAW_FILE_NAME(C18-NEG)=0029_KAH_Portal_FFA-Chow_7_PVP.raw SUBJECT_SAMPLE_FACTORS - Chow_8_PVP Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:10 RAW_FILE_NAME(HILIC-POS)=0009_KAH_Portal_HIL-Chow_8_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0009_KAH_Portal_CMH_Chow_8_PVP.raw; RAW_FILE_NAME(C8-POS)=0009_KAH_Portal_LIP-Chow_8_PVP.raw; RAW_FILE_NAME(C18-NEG)=0009_KAH_Portal_FFA-Chow_8_PVP.raw SUBJECT_SAMPLE_FACTORS - HFD_9_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:8 RAW_FILE_NAME(HILIC-POS)=0006_KAH_Portal_HIL-HFD_9_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0006_KAH_Portal_CMH_HFD_9_PVP.raw; RAW_FILE_NAME(C8-POS)=0006_KAH_Portal_LIP-HFD_9_PVP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - HFD_10_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:4 RAW_FILE_NAME(HILIC-POS)=0002_KAH_Portal_HIL-HFD_10_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0002_KAH_Portal_CMH_HFD_10_PVP.raw; RAW_FILE_NAME(C8-POS)=0002_KAH_Portal_LIP-HFD_10_PVP; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - HFD_11_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:26 RAW_FILE_NAME(HILIC-POS)=0025_KAH_Portal_HIL-HFD_11_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0025_KAH_Portal_CMH_HFD_11_PVP.raw; RAW_FILE_NAME(C8-POS)=0025_KAH_Portal_LIP-HFD_11_PVP.raw; RAW_FILE_NAME(C18-NEG)=0025_KAH_Portal_FFA-HFD_11_PVP.raw SUBJECT_SAMPLE_FACTORS - HFD_12_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:3 RAW_FILE_NAME(HILIC-POS)=0001_KAH_Portal_HIL-HFD_12_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=Insufficient sample for analysis; RAW_FILE_NAME(C8-POS)=Insufficient sample for analysis; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - HFD_13_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:14 RAW_FILE_NAME(HILIC-POS)=0013_KAH_Portal_HIL-HFD_13_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0013_KAH_Portal_CMH_HFD_13_PVP.raw; RAW_FILE_NAME(C8-POS)=0013_KAH_Portal_LIP-HFD_13_PVP.raw; RAW_FILE_NAME(C18-NEG)=0013_KAH_Portal_FFA-HFD_13_PVP.raw SUBJECT_SAMPLE_FACTORS - HFD_14_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:20 RAW_FILE_NAME(HILIC-POS)=0019_KAH_Portal_HIL-HFD_14_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0019_KAH_Portal_CMH_HFD_14_PVP.raw; RAW_FILE_NAME(C8-POS)=0019_KAH_Portal_LIP-HFD_14_PVP.raw; RAW_FILE_NAME(C18-NEG)=0019_KAH_Portal_FFA-HFD_14_PVP.raw SUBJECT_SAMPLE_FACTORS - HFD_15_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:31 RAW_FILE_NAME(HILIC-POS)=0030_KAH_Portal_HIL-HFD_15_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0030_KAH_Portal_CMH_HFD_15_PVP.raw; RAW_FILE_NAME(C8-POS)=0030_KAH_Portal_LIP-HFD_15_PVP.raw; RAW_FILE_NAME(C18-NEG)=0030_KAH_Portal_FFA-HFD_15_PVP.raw SUBJECT_SAMPLE_FACTORS - HFD_16_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:9 RAW_FILE_NAME(HILIC-POS)=0008_KAH_Portal_HIL-HFD_16_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0008_KAH_Portal_CMH_HFD_16_PVP.raw; RAW_FILE_NAME(C8-POS)=0008_KAH_Portal_LIP-HFD_16_PVP.raw; RAW_FILE_NAME(C18-NEG)=0008_KAH_Portal_FFA-HFD_16_PVP.raw SUBJECT_SAMPLE_FACTORS - Vanco_17_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:16 RAW_FILE_NAME(HILIC-POS)=0015_KAH_Portal_HIL-Vanco_17_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0015_KAH_Portal_CMH_Vanco_17_PVP.raw; RAW_FILE_NAME(C8-POS)=0015_KAH_Portal_LIP-Vanco_17_PVP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Vanco_18_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:6 RAW_FILE_NAME(HILIC-POS)=0004_KAH_Portal_HIL-Vanco_18_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0004_KAH_Portal_CMH_Vanco_18_PVP.raw; RAW_FILE_NAME(C8-POS)=0004_KAH_Portal_LIP-Vanco_18_PVP.raw; RAW_FILE_NAME(C18-NEG)=0004_KAH_Portal_FFA-Vanco_18_PVP.raw SUBJECT_SAMPLE_FACTORS - Vanco_20_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:19 RAW_FILE_NAME(HILIC-POS)=0018_KAH_Portal_HIL-Vanco_20_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0018_KAH_Portal_CMH_Vanco_20_PVP.raw; RAW_FILE_NAME(C8-POS)=0018_KAH_Portal_LIP-Vanco_20_PVP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Vanco_21_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:12 RAW_FILE_NAME(HILIC-POS)=0011_KAH_Portal_HIL-Vanco_21_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0011_KAH_Portal_CMH_Vanco_21_PVP.raw; RAW_FILE_NAME(C8-POS)=0011_KAH_Portal_LIP-Vanco_21_PVP.raw; RAW_FILE_NAME(C18-NEG)=0011_KAH_Portal_FFA-Vanco_21_PVP.raw SUBJECT_SAMPLE_FACTORS - Vanco_22_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:28 RAW_FILE_NAME(HILIC-POS)=0027_KAH_Portal_HIL-Vanco_22_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0027_KAH_Portal_CMH_Vanco_22_PVP.raw; RAW_FILE_NAME(C8-POS)=0027_KAH_Portal_LIP-Vanco_22_PVP.raw; RAW_FILE_NAME(C18-NEG)=0027_KAH_Portal_FFA-Vanco_22_PVP.raw SUBJECT_SAMPLE_FACTORS - Vanco_23_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:17 RAW_FILE_NAME(HILIC-POS)=0016_KAH_Portal_HIL-Vanco_23_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0016_KAH_Portal_CMH_Vanco_23_PVP.raw; RAW_FILE_NAME(C8-POS)=0016_KAH_Portal_LIP-Vanco_23_PVP.raw; RAW_FILE_NAME(C18-NEG)=0016_KAH_Portal_FFA-Vanco_23_PVP.raw SUBJECT_SAMPLE_FACTORS - Vanco_24_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:23 RAW_FILE_NAME(HILIC-POS)=0022_KAH_Portal_HIL-Vanco_24_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0022_KAH_Portal_CMH_Vanco_24_PVP.raw; RAW_FILE_NAME(C8-POS)=0022_KAH_Portal_LIP-Vanco_24_PVP.raw; RAW_FILE_NAME(C18-NEG)=0022_KAH_Portal_FFA-Vanco_24_PVP.raw SUBJECT_SAMPLE_FACTORS - Metro_25_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:15 RAW_FILE_NAME(HILIC-POS)=0014_KAH_Portal_HIL-Metro_25_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=Insufficient sample for analysis; RAW_FILE_NAME(C8-POS)=0014_KAH_Portal_LIP-Metro_25_PVP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Metro_26_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:21 RAW_FILE_NAME(HILIC-POS)=0020_KAH_Portal_HIL-Metro_26_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0020_KAH_Portal_CMH_Metro_26_PVP.raw; RAW_FILE_NAME(C8-POS)=0020_KAH_Portal_LIP-Metro_26_PVP.raw; RAW_FILE_NAME(C18-NEG)=Insufficient sample for analysis SUBJECT_SAMPLE_FACTORS - Metro_27_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:18 RAW_FILE_NAME(HILIC-POS)=0017_KAH_Portal_HIL-Metro_27_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0017_KAH_Portal_CMH_Metro_27_PVP.raw; RAW_FILE_NAME(C8-POS)=0017_KAH_Portal_LIP-Metro_27_PVP.raw; RAW_FILE_NAME(C18-NEG)=0017_KAH_Portal_FFA-Metro_27_PVP.raw SUBJECT_SAMPLE_FACTORS - Metro_28_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:27 RAW_FILE_NAME(HILIC-POS)=0026_KAH_Portal_HIL-Metro_28_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0026_KAH_Portal_CMH_Metro_28_PVP.raw; RAW_FILE_NAME(C8-POS)=0026_KAH_Portal_LIP-Metro_28_PVP.raw; RAW_FILE_NAME(C18-NEG)=0026_KAH_Portal_FFA-Metro_28_PVP.raw SUBJECT_SAMPLE_FACTORS - Metro_29_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:24 RAW_FILE_NAME(HILIC-POS)=0023_KAH_Portal_HIL-Metro_29_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0023_KAH_Portal_CMH_Metro_29_PVP.raw; RAW_FILE_NAME(C8-POS)=0023_KAH_Portal_LIP-Metro_29_PVP.raw; RAW_FILE_NAME(C18-NEG)=0023_KAH_Portal_FFA-Metro_29_PVP.raw SUBJECT_SAMPLE_FACTORS - Metro_30_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:7 RAW_FILE_NAME(HILIC-POS)=0005_KAH_Portal_HIL-Metro_30_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0005_KAH_Portal_CMH_Metro_30_PVP.raw; RAW_FILE_NAME(C8-POS)=0005_KAH_Portal_LIP-Metro_30_PVP.raw; RAW_FILE_NAME(C18-NEG)=0005_KAH_Portal_FFA-Metro_30_PVP.raw SUBJECT_SAMPLE_FACTORS - Metro_31_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:11 RAW_FILE_NAME(HILIC-POS)=0010_KAH_Portal_HIL-Metro_31_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0010_KAH_Portal_CMH_Metro_31_PVP.raw; RAW_FILE_NAME(C8-POS)=0010_KAH_Portal_LIP-Metro_31_PVP.raw; RAW_FILE_NAME(C18-NEG)=0010_KAH_Portal_FFA-Metro_31_PVP.raw SUBJECT_SAMPLE_FACTORS - Metro_32_PVP Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:22 RAW_FILE_NAME(HILIC-POS)=0021_KAH_Portal_HIL-Metro_32_PVP.raw; RAW_FILE_NAME(HILIC-NEG)=0021_KAH_Portal_CMH_Metro_32_PVP.raw; RAW_FILE_NAME(C8-POS)=0021_KAH_Portal_LIP-Metro_32_PVP.raw; RAW_FILE_NAME(C18-NEG)=0021_KAH_Portal_FFA-Metro_32_PVP.raw #COLLECTION CO:COLLECTION_SUMMARY At the end of the 18 week Antibiotic and diet treatment, animals (n = 6) for CO:COLLECTION_SUMMARY each genotype were fasted for 2 hours, anesthetized with Avertin (100 ul per 10 CO:COLLECTION_SUMMARY g of BW), after which cecal contents, intestinal and liver biopsies, and portal CO:COLLECTION_SUMMARY and cardiac blood were collected. All experiments were approved by the IACUC of CO:COLLECTION_SUMMARY the Joslin Diabetes Center and were in accordance with NIH guidelines. CO:SAMPLE_TYPE Blood (plasma) CO:STORAGE_CONDITIONS -80℃ #TREATMENT TR:TREATMENT_SUMMARY Five-week-old mice were randomized according to body weight and housed 4 per TR:TREATMENT_SUMMARY cage. After one week of acclimation, the mice were divided into 4 groups: two TR:TREATMENT_SUMMARY groups received normal autoclaved drinking water, one received water containing TR:TREATMENT_SUMMARY vancomycin (1g/L, sc-224363A, Santa Cruz) and the fourth received water TR:TREATMENT_SUMMARY containing metronidazole (1g/L, M3761-25G, Sigma). Drinking water solutions were TR:TREATMENT_SUMMARY prepared and changed weekly. After one week, one group of mice on water TR:TREATMENT_SUMMARY continued on the regular chow diet (Mouse Diet 9F 5020, PharmaServ) while the TR:TREATMENT_SUMMARY other three groups, one on plain water and the two on antibiotics, were started TR:TREATMENT_SUMMARY on a high fat diet containing 60% fat by calories (HFD, D12492, Research Diets). TR:TREATMENT_SUMMARY All mice continued these diets from 7 to 18 weeks of age. TR:TREATMENT_COMPOUND Vancomycin (1g/L, sc-224363A, Santa Cruz) or Metronidazole (1g/L, M3761-25G, TR:TREATMENT_COMPOUND Sigma) TR:ANIMAL_ENDP_EUTHANASIA Cardiac Puncture Plasma, Portal Vein Plasma #SAMPLEPREP SP:SAMPLEPREP_SUMMARY Plasma samples were profiled in each LC-MS method as follows: - HILIC-pos: SP:SAMPLEPREP_SUMMARY Plasma samples (10 μL) were extracted with the addition of nine volumes of SP:SAMPLEPREP_SUMMARY 74.9:24.9:0.2 v/v/v acetonitrile/methanol/formic acid containing stable SP:SAMPLEPREP_SUMMARY isotope-labeled internal standards (valine-d8, Isotec; and phenylalanine-d8, SP:SAMPLEPREP_SUMMARY Cambridge Isotope Laboratories). The samples were centrifuged (10 min, 9,000g, SP:SAMPLEPREP_SUMMARY 4°C), and the supernatants (10 μL) injected directly onto column. - C8-pos: SP:SAMPLEPREP_SUMMARY Samples (10 μL) were extracted using 190 μL isopropanol containing SP:SAMPLEPREP_SUMMARY 1-dodecanoyl-2-tridecanoyl-sn-glycero-3-phosphocholine as an internal standard SP:SAMPLEPREP_SUMMARY (Avanti Polar Lipids; Alabaster, AL). After centrifugation (10 min, 9,000g, SP:SAMPLEPREP_SUMMARY ambient temperature), supernatants (2 μL) were injected directly onto column. - SP:SAMPLEPREP_SUMMARY C18-neg: Samples (30 μL) were extracted using 90 μl methanol containing SP:SAMPLEPREP_SUMMARY 15R-15-methyl Prostaglandin A2,15R-15-methyl Prostaglandin F2α, 15S-15-methyl SP:SAMPLEPREP_SUMMARY Prostaglandin D2, 15S-15-methyl Prostaglandin E1, and 15S-15-methyl SP:SAMPLEPREP_SUMMARY Prostaglandin E2 as internal standards (Cayman Chemical Co.) and centrifuged (10 SP:SAMPLEPREP_SUMMARY min, 9,000g, 4°C). The supernatants (10 μL) were injected onto column. - SP:SAMPLEPREP_SUMMARY HILIC-neg: Samples (30 μL) were extracted with the addition of four volumes of SP:SAMPLEPREP_SUMMARY 80% methanol containing inosine-15N4, thymine-d4 and glycocholate-d4 internal SP:SAMPLEPREP_SUMMARY standards (Cambridge Isotope Laboratories). The samples were centrifuged (10 SP:SAMPLEPREP_SUMMARY min, 9,000g, 4°C) and the supernatants 10 μL) were injected directly onto SP:SAMPLEPREP_SUMMARY column. #CHROMATOGRAPHY CH:CHROMATOGRAPHY_TYPE HILIC CH:INSTRUMENT_NAME Shimadzu Nexera X2 CH:COLUMN_NAME Phenomenex Luna NH2 (150 x 2 mm, 5 um) CH:SOLVENT_A 100% water; 20 mM ammonium acetate; 20 mM ammonium hydroxide CH:SOLVENT_B 75% acetonitrile/25% methanol; 10 mM ammonium hydroxide CH:FLOW_GRADIENT Elution began with 10% mobile phase A and 90% mobile phase B, followed by a CH:FLOW_GRADIENT linear gradient to 100% mobile phase A over 10 minutes. The gradient was then CH:FLOW_GRADIENT returned to 10% mobile phase A over 2 minutes and held for 13 minutes to CH:FLOW_GRADIENT equilibrate the column. MS acquisition stopped at 16 minutes. CH:FLOW_RATE 400 µL/min CH:COLUMN_TEMPERATURE 30°C CH:INTERNAL_STANDARD Inosine-15N4,Thymine-d4, Glycocholate-d4, CIL NLM-4264-0.01, DLM-2742-0, CH:INTERNAL_STANDARD DLM-1089-1 respectively #ANALYSIS AN:ANALYSIS_TYPE MS #MS MS:INSTRUMENT_NAME Thermo Q Exactive Plus Orbitrap MS:INSTRUMENT_TYPE Orbitrap MS:MS_TYPE ESI MS:ION_MODE NEGATIVE MS:MS_COMMENTS Raw data were processed using TraceFinder 3.3 software (Thermo Fisher MS:MS_COMMENTS Scientific; Waltham, MA) and Progenesis QI (Nonlinear Dynamics; Newcastle upon MS:MS_COMMENTS Tyne, UK). Metabolite identities were confirmed using authentic reference MS:MS_COMMENTS standards or reference samples. MS:MS_RESULTS_FILE ST004133_AN006852_Results.txt UNITS:Abudances Has m/z:Yes Has RT:Yes RT units:Minutes #MS_METABOLITE_DATA MS_METABOLITE_DATA:UNITS Abudances MS_METABOLITE_DATA_START Samples Chow_1_CP Chow_2_CP Chow_3_CP Chow_4_CP Chow_5_CP Chow_6_CP Chow_7_CP Chow_8_CP HFD_9_CP HFD_10_CP HFD_11_CP HFD_12_CP HFD_13_CP HFD_14_CP HFD_15_CP HFD_16_CP Vanco_17_CP Vanco_18_CP Vanco_19_CP Vanco_21_CP Vanco_22_CP Vanco_23_CP Vanco_24_CP Metro_25_CP Metro_26_CP Metro_27_CP Metro_28_CP Metro_29_CP Metro_30_CP Metro_31_CP Metro_32_CP Chow_1_PVP Chow_2_PVP Chow_3_PVP Chow_4_PVP Chow_5_PVP Chow_6_PVP Chow_7_PVP Chow_8_PVP HFD_9_PVP HFD_10_PVP HFD_11_PVP HFD_13_PVP HFD_14_PVP HFD_15_PVP HFD_16_PVP Vanco_17_PVP Vanco_18_PVP Vanco_20_PVP Vanco_21_PVP Vanco_22_PVP Vanco_23_PVP Vanco_24_PVP Metro_27_PVP Metro_28_PVP Metro_29_PVP Metro_30_PVP Metro_31_PVP Metro_32_PVP Factors Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:60 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:36 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:45 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:64 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:56 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:63 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:61 Sample source:Cardiac Puncture Plasma | Diet:Chow | Antibiotic:- | Injection order:42 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:39 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:35 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:57 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:34 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:46 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:51 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:62 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:- | Injection order:41 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:48 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:37 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:40 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:44 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:59 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:49 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:54 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:47 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:52 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:50 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:58 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:55 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:38 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:43 Sample source:Cardiac Puncture Plasma | Diet:HFD | Antibiotic:Met | Injection order:53 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:29 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:5 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:13 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:33 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:25 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:32 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:30 Sample source:Portal Vein Plasma | Diet:Chow | Antibiotic:- | Injection order:10 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:8 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:4 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:26 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:14 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:20 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:31 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:- | Injection order:9 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:16 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:6 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:19 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:12 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:28 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:17 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Vanco | Injection order:23 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:18 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:27 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:24 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:7 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:11 Sample source:Portal Vein Plasma | Diet:HFD | Antibiotic:Met | Injection order:22 thymine-d4 194743 215403 212998 211037 193924 216544 203768 216570 197661 187641 203595 191482 207262 199698 214673 192525 192803 192464 186852 178263 196894 183711 223461 204216 193383 246196 194608 205610 204525 201138 193784 163868 211791 196017 197190 212102 180648 209324 211754 159836 169734 178333 170831 185196 204185 216720 194577 193005 186512 236313 198908 166382 224672 230024 195884 192328 224177 195261 194507 inosine-15N4 37844 39444 40138 37828 33857 38874 37534 39818 38718 38889 37681 43189 39405 41957 41102 39379 39280 38903 38537 42569 37016 42071 37436 42885 42010 43081 37084 36389 41117 41294 43569 38732 39539 33887 37865 40482 46650 45260 45694 37464 36275 44616 42131 36028 44745 42139 36077 39498 33103 43451 44464 37829 41053 40933 43571 40806 56159 43214 42651 glycocholate-d4 366312 292768 320006 298754 219356 418098 343939 363657 302821 307213 323443 317183 388554 359666 405979 351825 336030 359650 280476 321664 347220 359871 374265 314010 349407 392476 354258 366623 359706 380604 327703 370758 354332 241983 276860 335032 342709 277600 405270 302583 392604 347773 305515 340402 392336 358415 336307 413133 292558 366293 395930 301575 394622 341662 393735 329986 531510 459435 384034 10Z-heptadecenoate 155193 420069 125385 67429 97599 119714 124960 175685 334175 256214 264267 123233 188095 147915 95667 61951 434964 288629 202357 80979 211267 115858 159985 329761 322323 307683 103816 89044 177908 156492 70893 46063 183889 33045 19002 38786 44935 47414 120537 176026 131956 161696 34987 103280 114097 44495 255436 239035 58116 64696 175844 41696 121538 328982 77003 84772 102252 133481 45048 1-methylhistidine 34007 36396 42206 46344 34594 58353 50341 59364 31909 33688 31794 35174 38159 46091 42421 46460 38165 32616 36516 32333 44675 36781 40609 26540 32977 43188 36800 40070 36691 38799 35532 29256 30085 35569 36726 27536 53323 42056 50408 27398 28633 32173 26428 35399 40171 43385 28205 28207 23689 27889 43146 32355 37979 35827 39562 33954 33225 36228 32352 2-aminoadipate 39336 22339 30221 30234 29085 36383 37023 28570 47975 50993 40393 59702 35999 37959 37974 50926 44858 48279 42984 44458 47773 36693 32296 51608 51078 49816 52447 51915 45771 50427 38403 34626 21912 30488 25999 14685 31013 15630 24337 51427 43193 35864 32729 31398 28908 43328 44152 36503 27101 27780 31634 32074 26452 32470 45658 36425 38011 38240 27214 2-aminooctanoate 12707 12434 13440 7837 14348 14877 10524 14261 20341 18631 18089 11311 9293 8157 10583 9166 15718 16885 11277 6674 10062 8110 7738 13763 17314 20586 10079 15519 12523 11984 11233 7890 7525 7663 4209 9704 10116 7135 9356 13309 11696 14060 5214 5637 8010 7723 12015 11350 8520 5312 6184 6425 3722 15020 7291 8125 6275 8731 8583 2-hydroxy-3-methylpentanoate/hydroxyisocaproate 123454 113963 109435 129813 125924 126218 99479 124890 250620 207051 241752 142190 206189 250838 184115 199226 309985 264320 224519 228375 159477 178247 159357 218432 268809 371637 169371 197273 156191 229222 209504 151306 152366 94074 113850 108902 160444 92001 159925 283257 203359 361410 190730 201015 190721 184400 246029 296454 213417 178170 170076 120156 160127 325192 200873 272336 222330 228433 189940 2-hydroxyglutarate 294294 216875 227290 239073 184961 264523 199439 309509 368429 229400 420066 280574 317603 374810 201023 358605 327007 529652 428189 387636 358380 278395 615375 297620 420647 821718 431923 329505 336761 290482 335111 294581 325594 409236 473973 487857 546071 472725 288775 420021 409850 539537 408720 351191 351458 542974 412498 784437 576145 585335 561905 468468 911919 972556 464200 529121 324951 452607 486144 2-isopropylmalate 31256 41383 37365 20515 17922 64053 27810 38674 7815 5762 6521 6308 3646 4727 5514 4982 4647 5920 4101 4627 12052 4314 12898 14353 19852 36481 21274 14470 5092 2926 4001 46699 70453 72014 33420 25383 96815 33234 60331 12363 10795 6360 5288 7766 6487 8711 8119 6864 10521 4892 9563 7255 9960 27545 20684 12417 3279 4176 3033 2-phosphoglycerate 8633 4385 15029 9875 3755 9752 23127 12579 4512 12195 11712 6235 4264 15554 18395 15566 13961 29333 10990 14319 5493 27941 8388 12969 6595 6845 10734 4642 4018 11703 9382 14461 45811 57658 20164 29427 40838 23066 33052 5173 44723 38455 30501 32217 29640 36246 21603 35168 27969 15155 33573 40400 29454 21903 29900 31115 47234 31777 28505 3-methyladipate/pimelate 31572 24708 25464 22111 19815 23624 27193 23380 23644 19953 20413 22497 23843 24696 16631 19614 20538 24939 18086 18958 26288 21193 22122 21674 21301 25232 19700 25824 18291 19030 19894 49022 36963 43550 53932 33006 34533 30391 25853 39548 32215 30115 28945 32682 24136 32296 34579 33139 49368 25523 30110 28243 23191 26449 23449 35170 22027 27877 22294 3-methylhistidine 4620 4049 4584 8396 11014 9594 8041 10992 9688 13421 11299 8491 10944 12999 12228 14042 12025 12243 12324 11487 13664 11383 9965 10892 11494 13759 12541 18760 9945 13341 9149 4253 4120 3563 5541 7774 8646 6999 8709 8293 10120 9534 9063 10378 12343 13384 12119 9724 10678 10187 11499 10501 10096 14493 13972 16082 8712 10516 7715 3-phosphoglycerate 68612 30402 101590 63102 24435 58566 134157 78812 29029 63410 66054 34856 32666 93270 101024 106448 110310 168881 68666 82344 47503 179515 49409 78071 45636 46800 94233 45698 30924 78247 75256 73667 277065 348513 94391 177848 224723 141567 251589 42423 238154 199871 173633 220804 150351 245886 143491 219432 154230 95879 208706 244004 217131 142773 170067 177811 260713 187587 198921 4-hydroxybenzaldehyde 392889 198617 450189 758691 296631 523801 392878 605032 286115 368983 386796 498766 255708 361991 389397 618776 420894 256074 287946 417623 492423 346303 341788 343411 269144 396783 451096 583351 323946 567682 932963 289511 184168 286061 300179 192639 435898 110606 577157 180410 432900 380198 218096 388879 376437 670635 395146 346323 278234 193414 553988 393472 453306 389993 545964 674084 354495 502872 939670 4-methylcatechol 34961 23192 27451 32442 32130 43436 34748 35001 35396 46163 46934 36595 37545 45691 40492 39422 33695 43910 42583 48755 38761 42333 19888 32485 40860 7701 35365 41380 30649 36321 21902 45342 22083 22077 15690 35181 43310 18577 40095 42224 68497 54007 49238 54260 45602 45812 36157 54758 48073 20160 45459 50175 29938 17839 34109 44765 40576 44090 25336 4-pyridoxate 64754 37402 107175 69958 56574 99884 88523 48374 46305 24583 68820 27745 37557 56024 69429 28974 90573 120701 98844 53598 67668 57003 79386 55234 55313 87382 38134 31628 36724 29213 56186 134544 77316 139798 94047 37104 154838 71933 49181 122889 63960 96703 83759 43614 54142 23363 57219 75818 12175 25233 34452 75876 47268 50559 29634 25717 36473 21807 31312 5-dodecenoate 57894 75652 43824 24955 15005 35211 32450 34715 176595 208100 237777 88785 60377 71340 86029 65244 230371 193989 187909 70519 124090 109815 132102 201136 225184 298837 122951 86438 145053 119441 142329 37162 30909 34581 23630 10432 29389 21391 27437 168016 177362 234122 60082 62434 82257 64346 188543 195015 68382 52649 81737 113469 119272 258506 119970 78307 100890 108707 125372 6-phosphogluconate 9368 2905 11182 10097 3285 1390 21048 2316 3419 11410 14595 7146 3732 17179 16547 16621 18840 19056 6447 14297 13958 16351 7863 12026 3921 15479 11171 10566 3496 9075 8714 6403 11010 25150 9002 14378 13322 17580 5282 6521 7824 7773 10313 8903 3673 7029 9055 7646 15185 6749 9791 12735 8435 7743 8514 8185 7388 2823 5254 acetylalanine 23076 23600 35150 28220 19973 24959 22316 26888 21300 15370 19012 18574 19018 18390 20806 18652 25789 25732 23849 19879 21244 14180 26738 23099 21176 27300 18302 20383 19529 18386 19376 26903 23900 37556 29635 17300 28526 23093 22477 25521 15197 20147 19289 18585 21115 21072 25428 27891 19021 22997 20125 18926 25816 28703 25267 19587 18271 17400 18412 aconitate 1030905 1175227 1116551 1228887 897645 1226149 1029865 1231577 1208485 1090561 1190960 1117768 1030925 1019773 896525 1124337 1460272 1458522 1269919 1208506 1188268 921629 1484538 1433203 1349042 1426497 1148051 1108133 1167101 1107002 1172076 1159821 1041221 2552880 2734545 2148563 2802066 2093928 1914370 1014999 1977637 2341027 2103184 2408029 2036165 2454049 1654793 3486068 2735807 2790336 2916513 2214887 3519845 2978124 2919739 2774087 2047371 2276523 2297369 adipate/methylglutarate 53014 47838 53475 49139 44207 49611 63462 57684 56623 50267 47001 54962 50249 55987 39802 54752 60224 64949 49333 52385 62091 57256 68402 52115 54687 62820 45789 60637 48687 47912 51776 74606 68913 88641 117647 77725 88110 71872 53960 98279 74069 73170 81395 77253 61016 82731 64066 103025 87431 84309 88372 69876 131065 58453 75084 92914 75447 70301 69083 adonitol/arabitol 797179 731759 840331 951667 827611 667905 814952 843815 543092 449819 485018 599252 531428 587345 545978 686877 645047 615750 572871 551025 667441 531109 867974 475868 597446 839922 486113 592434 530661 536888 682931 1355921 1030475 1355529 1629882 848649 1192342 1425704 833025 888303 833244 867811 905440 561716 550263 656527 678711 624065 696496 545058 650097 906698 933914 814969 494005 573615 616567 514022 674450 ADP 46457 159543 108265 72497 2575 94398 120741 179145 6136 48811 111614 566 7093 1209 111301 163715 49621 21822 20037 35528 35496 83171 46736 974 647 427 2088 5117 90248 69018 203391 566822 49386 171708 389743 84858 116881 41069 157233 154739 176166 167748 79459 145681 82784 161353 142392 26970 135889 138952 124071 67996 141175 299489 113160 65904 87440 alanine 707304 734474 819163 1040889 1214561 1123755 1023696 1039053 856310 758671 587604 1594196 911824 810209 653653 1037475 708121 781823 786339 1306739 1189947 934086 1197553 831419 603457 592285 1042869 1570147 954575 1010068 952444 399824 590608 596720 683316 1414247 953395 845643 1323017 594685 459917 401584 625593 1153987 841410 1607234 748374 1132126 1307671 1599851 1681006 768856 1417557 576228 1429024 1759221 1135405 1201415 1071170 alpha-glycerophosphate 110054 120684 229302 119082 181588 173576 332411 113886 137404 112679 150107 299814 119671 147344 131073 153530 130796 242047 316265 259962 210807 203497 200548 220916 169175 132507 195876 130594 144046 118508 102315 172880 163478 265161 189208 178328 339391 314097 96456 251367 144425 145413 173827 118256 107204 127313 171268 164890 108157 112928 110970 259451 158100 108689 149864 117734 138504 92028 93486 alpha-keto-beta-methylvalerate/alpha-ketoisocaproate 118622 114643 135023 262496 155591 222214 158809 303534 183456 98575 121345 243616 230587 202632 244694 230009 115209 167109 125039 175405 194997 181793 270175 117780 90341 151151 189756 236869 186086 238963 218421 39323 84093 53490 69141 189755 81587 88777 323137 132528 67051 60101 53732 259394 244852 282967 139862 205431 221406 342487 285120 96720 331160 231348 267271 304749 248364 299053 323570 aminobutyrate 24619 18608 28804 25379 25761 42122 29360 39289 37064 33868 33480 30774 33324 52187 29378 33572 76448 49593 47510 35557 40962 44994 65495 42818 36893 48002 34934 35986 46020 32916 49002 21268 16702 26935 21040 21291 37308 27209 35240 34654 30122 30210 29553 46847 29394 37631 97276 51540 28769 38548 39044 51291 69251 47646 40722 31473 34818 30304 47107 AMP 796052 1091178 1300643 1214957 787536 1202918 1033364 1129762 1154212 881415 1226683 545172 1020836 985377 1101583 908894 1057128 1212338 1411010 921654 1008872 1192873 702524 1328375 1138900 773621 1191760 741943 977316 1577253 937335 1217007 1587069 270420 87570 127313 217056 76228 383600 978599 130243 159316 116930 209981 102099 111708 1555978 161702 117929 33108 151440 119560 137431 136127 243015 228917 463238 84430 89860 arginine 359335 305705 302705 437759 413290 412944 280501 306146 254195 276000 289093 289614 325657 327129 265937 330286 282467 203967 308439 283128 270144 278328 320517 345433 287817 297578 333011 340404 276226 269050 269166 233269 154031 139277 141238 71672 159884 73416 210870 129501 85379 114553 108373 211654 160718 268849 205698 152072 141018 241933 156684 106030 220308 117066 289427 201267 152389 170317 156547 ascorbate 77397 51356 56197 57886 46994 76672 32683 29067 7044 8300 6690 7153 12994 18483 11783 26319 5971 7106 5601 8029 96857 11338 61446 8685 9210 6464 8883 306211 17489 123157 21652 86375 47072 55628 72228 35014 88124 26949 25026 7779 7934 7364 12293 14928 13309 26262 6307 7147 6815 7308 50973 10768 36765 5730 9620 176621 11977 119000 13349 asparagine 129438 127384 156735 251753 238618 244442 168791 249712 162408 204317 147440 351116 193996 180558 160685 277884 152047 187583 135345 286955 262830 164314 355603 161066 145604 143966 215079 328211 192238 251992 293123 74903 91216 103539 137518 243252 180448 108793 396676 107487 119274 99133 114953 255486 185557 460808 161910 299634 250454 458360 411438 118145 375045 134646 400777 367097 274551 301252 356451 aspartate 17976 19843 28396 16421 21479 22264 16736 31783 27584 22678 26406 28442 17338 31133 28718 28684 21674 43435 33010 31417 42797 21729 34757 27714 30771 19429 49970 47022 32257 31359 29837 41342 61639 60509 37993 70952 82611 29292 92011 32382 49692 40784 49117 41202 32814 49357 55734 42282 38742 37342 44396 72393 39466 27276 50481 45961 52173 36524 39400 ATP 2938 492 130809 20381 70247 86623 31746 2414 54978 28119 41763 5413 36790 30931 33454 48629 7568 40913 28100 21957 11138 4153 82156 577 25521 50674 azelate 450063 314012 397863 561420 315381 220152 361957 256013 647936 406604 378784 336200 654565 620326 256358 248389 449972 508268 341677 291793 414395 307083 452842 738098 436099 469825 545085 662863 484617 301443 286419 1432204 1125868 1050400 638225 1225558 435373 786391 379719 1315568 792068 798338 691172 891337 585521 556292 1422924 795145 2096742 810365 648599 651727 346554 613804 648519 536538 493393 475041 356592 butyrate 2867 2168 1773 1072 1751 1837 1627 1814 2182 1569 1888 1791 2568 3742 1630 2386 1964 2768 2570 2058 2452 2701 2524 1522 2052 902 1394 2344 1244 1519 993 12368 26248 10404 6732 51144 19079 6792 40941 4286 3570 3719 6776 18088 11179 13434 5185 3778 7546 2825 3632 4652 1625 2713 5074 7833 4569 5217 2814 caffeate 73667 73362 72795 74247 73440 73104 75041 75330 74543 74278 72586 76369 76501 75668 76257 75419 75359 76093 73812 77147 73433 78551 70506 78541 76364 74557 74791 75505 71535 76752 76293 77165 78070 81965 70775 81256 79732 90976 75549 77399 71472 73316 85748 70630 82166 68748 75337 68965 97512 99040 72090 72360 70306 73414 73312 74788 76067 72970 80842 caproate 46196 26968 39588 38484 30039 53256 56488 57470 78946 96534 101542 90828 63047 91425 74142 74785 75698 73140 90481 108938 95771 98833 33343 60045 74878 23032 54921 79000 58307 81474 64729 37849 32830 31380 10113 31446 69585 10392 76882 63051 110228 141074 86671 152875 114427 129285 107704 169473 95632 15449 158635 138991 78607 45979 111110 137520 82847 119754 99058 caprylate 563051 449400 459962 355301 291883 436457 702582 454581 465210 497911 451022 387917 540827 417260 396456 453448 327725 532984 457941 448309 458940 484458 414148 396704 505885 513492 506232 493995 492508 408702 545851 479466 532512 396431 393022 524605 486429 446208 393378 369379 763625 390617 362661 509931 437299 570390 476225 441879 341201 310199 471162 591275 506269 392184 454602 424429 519478 516557 531702 chenodeoxycholate/deoxycholate 2745 289 2756 71621 2363 313 78201 79539 1011 239325 634 1286 21228 15141 982 3097 cinnamoylglycine 171005 140907 239563 206022 530 1164 618 481 566 2089 822 981 903 1331 365 1114 502 546 638 360 226139 224616 292317 327236 1481 431 1212 10229 1434 491 957 403 601 416 8387 452 520 2396 1063 554 442 693 724 988 citrate/isocitrate 24194276 26887332 25495823 27160825 20943473 26413350 24435756 26004242 26527448 25270317 26963915 26181195 22928796 22896668 20301243 24916431 30784273 33695683 28981190 28104525 27779946 22417187 34006968 31008326 29050339 29785443 26750403 24874951 25226756 24503635 25228911 26308717 25335820 28084125 35289603 26098799 32621411 26307895 28268926 24994834 26263267 30269442 25610278 29090684 26371437 29943334 34062542 39177463 30831735 33019310 34192754 27060531 37951420 33070626 35546917 33315604 28788522 27764618 28497553 citrulline 63811 71886 81463 104334 69125 77711 55073 86737 65313 71318 73473 69418 67245 58105 75425 83634 87420 73058 82187 108554 83420 58389 82894 78667 70756 63079 75355 78972 53825 76577 69020 74415 82113 94066 122868 73295 95185 59711 98251 68747 66573 88498 85265 82405 84137 91802 103104 95657 103041 124381 121061 63208 104123 84100 108280 98795 73963 79969 71121 CMP 1296 294 462 815 795 531 285 513 2111 525 89 13354 1431 959 344 3173 1371 102 1240 2959 755 270 359 131 108 10738 2829 3167 9446 12236 2751 1649 4482 2784 10603 3701 3186 1553 19750 6218 3188 5487 384 15896 10348 13144 10945 3801 1169 1628 corticosterone 52167 111166 95020 66914 40778 31086 45201 69613 153032 103153 139986 76129 86336 146940 70789 52042 126230 161440 85631 98281 86635 42578 117296 99248 114199 160447 38509 77705 43206 80017 30604 25251 70437 72862 47584 2241 26973 36625 37781 108729 47759 135235 64551 76140 54171 30464 75483 119454 53316 79777 62129 42443 86234 137907 31077 48039 23468 45607 33778 cystathionine 7217 6306 10390 4717 3001 3423 3544 4351 3482 1212 894 3729 1927 2145 1584 4056 2751 1181 4107 4830 5110 2616 5586 2410 4955 1726 3421 2787 2103 745 6025 6474 7399 6063 6761 322 2973 790 3394 4057 404 693 2098 1376 593 2708 1428 728 3244 4068 1854 3725 467 3092 3112 1579 756 2986 cystine 190485 191486 183367 228645 217450 238533 167497 226485 210093 186541 236299 185822 223528 153876 183177 138073 175201 204467 187598 137668 144943 133502 89711 229660 216345 106167 198721 238892 219218 157529 88659 117345 79261 110737 141659 209296 112440 151305 216107 134195 129916 161096 115973 127058 179941 142417 111472 143795 176717 146810 105032 114395 98341 101143 189852 128488 104007 158607 90136 cytidine 63663 51369 76935 49714 83728 74517 62625 26156 69436 60108 42544 39716 59433 38791 22686 40213 57215 74109 73381 20643 47789 44837 68163 74802 75570 91132 41293 77977 69597 3410 65208 15537 41795 57160 11145 47515 32734 35420 6885 14641 23277 11628 9516 35172 14218 43450 43734 75720 20336 11317 5936 29361 47767 56773 14223 67039 67211 1768 29269 DHAP/glyceraldehyde 3P 12383 11993 24057 6963 3396 8847 23364 11444 5647 5934 9009 2816 4166 4363 6329 9060 9208 15145 19424 9129 9468 8698 9924 10165 8470 6961 7076 3836 5204 3816 5879 12475 35202 30015 13899 6397 8043 9342 9799 6746 15197 7688 5023 7759 832 7246 22761 6114 5729 4040 4747 11518 6841 4002 7607 1770 11439 3271 806 docosapentaenoate 628415 1031445 438010 368823 329440 410771 384880 600938 632039 549176 579802 401078 444528 632241 348515 195701 639199 546484 436676 282683 381861 325757 581004 450510 749093 799713 301827 333958 525649 310771 251510 174861 423450 133633 97922 140496 129585 163661 345226 343420 185642 292834 126311 389726 260754 169052 372144 576776 235946 292494 296009 125278 388034 631483 213382 272972 362984 230484 181392 eicosapentaenoate 736821 1131657 476457 464398 523070 430618 472483 586347 196199 180581 197522 119976 176570 264590 143968 73952 262987 180939 163823 109678 169797 137918 160172 154424 237087 259735 112164 120227 214880 102026 55298 203252 462778 158239 139065 244515 148040 196300 366717 126672 69220 113778 58799 144145 85679 61819 144131 186443 71374 110227 109443 49895 90408 163557 64131 78151 139708 64503 34569 ethylmalonate 65229 51978 47754 38413 40044 58513 50083 50856 62275 46150 55973 35579 40646 45543 39840 38385 58482 59989 48682 35397 51240 40540 57438 47527 57157 67236 38071 35021 48244 45597 47529 68643 48946 50240 35567 36269 53532 43676 45328 59633 43619 53319 37713 41692 43069 39510 62022 61689 43061 31872 48220 40630 57146 66292 40041 31735 42100 41253 44440 fructose/glucose/galactose 37535859 42457203 40798495 40219098 34201993 38477782 40777462 40491601 38412463 40602317 40982233 39671187 37298922 41455101 37200174 35219881 31073262 38065479 37384473 42357541 37438230 38511772 32132727 36652794 37352681 30548958 36535075 28486970 38160461 40607199 32228823 49481294 44288912 47971541 56418891 31926825 49954052 48069948 35091772 56792560 52498602 47480091 48170601 38773065 37458985 33161249 34040563 34242282 37239168 36025668 35171581 51088966 32027793 28767493 39653747 28117209 32170441 38194746 30536253 fucose 4305013 4531507 4014886 4011861 7291095 7368502 6814236 6241213 4786862 4237158 3997196 4012840 4388937 4564401 4765771 4798488 5506501 5093543 5548285 6663254 5855171 5794840 5261557 6193600 4751951 6215862 6145397 6851753 6545825 7069146 6928895 3700386 3906192 3468767 3745685 7350533 7200204 6909812 6022377 3988107 3311037 4015920 3589783 4746618 5479845 5014965 5710357 6005298 5683711 8082528 6538047 5374361 5908701 6387965 7645797 7464751 6141496 7424188 7140660 fumarate/maleate 1716113 1390919 1481165 1686306 1628736 2026115 1777867 2080585 1645823 1471585 1601642 1666664 1624544 1622236 1590652 1748193 1438564 1867631 1574151 1735602 1817301 1473903 2108749 1554420 1545902 1732425 1915601 1902460 1570403 1681306 1747046 1525131 1514460 1625327 1870887 2019664 2141451 1805061 2106593 1555159 1744264 1494198 1695839 1679050 1652226 1919412 1691239 1923083 1723781 1855959 1915648 1851805 2127312 1832988 1721189 1910343 1669727 1961257 1902965 furosemide 4430 2146 2688 567 2305 1997 5482 3656 3847 11637 313 700 2252 1819 3329 1778 6097 1280 4260 2335 553 1733 268 693 655 2524 1650 6543 1715 2160 4922 1106 1333 1189 GDP 1035 56230 3079 16563 38537 5319 12426 16211 20927 19229 24919 7405 16335 21759 15910 22479 16065 12286 6016 22210 30815 14515 6387 8384 gemfibrozil 13169 12401 12792 13877 11930 12053 14319 13556 15041 16588 21316 20112 23102 26982 17056 15213 10057 11489 18305 28258 21079 17162 4755 11971 15518 4523 11889 20364 15382 15403 9196 13408 10594 14452 14995 10031 23168 10903 16628 21554 25752 36877 36608 41878 30495 27135 13438 33057 31587 18263 28158 32117 11465 8871 27422 32079 27556 24765 14119 glutamate 95429 75657 137956 92141 130101 113472 106414 112786 160241 103685 133452 140318 112152 151421 88672 120448 114544 292399 149413 125467 198825 132862 306785 153964 157527 167356 226871 237308 157869 127947 143478 232366 349679 256906 219179 185623 266553 36992 227883 217929 226022 167100 152266 218347 134605 268424 251124 243078 142645 207009 201359 205855 229508 139028 241720 247748 301885 155560 139401 glutamine 1576936 1847083 2041002 2216627 2127121 2080189 2096750 2313389 2151124 1708158 1982709 1654301 2131236 2041056 1674556 1988153 1790577 1935922 2144767 1949876 2012504 1780557 1871335 2059103 2168186 1843906 1978175 2277725 1723137 1689379 1944261 865524 1118582 1073067 1032987 1278312 1550308 1402227 1585510 1508618 932926 1274984 1305670 1057241 1138715 1229559 1148208 894515 1323962 995002 1100095 1437847 923262 1050461 1344489 1379154 749010 1055315 1211257 glutathione oxidized 76796 110407 133541 55604 120396 97852 285586 119768 20467 29211 81243 121033 58435 116052 93838 125688 69048 156726 159999 320484 200932 139598 76723 64188 51441 54863 181892 35535 57530 124668 60796 332545 354765 511852 265284 189857 628979 467783 75462 118954 139700 195505 368602 74922 35591 67925 135243 64833 145323 19777 135177 402798 102207 59298 97575 64182 118366 41397 58943 glycerate 35495 36575 39346 33704 35060 35609 33247 31831 37763 30828 30890 40815 43283 45652 26883 37136 34850 58310 38059 38590 35605 33389 50517 55668 33100 38900 35898 41330 40082 35696 34075 24726 26592 30754 39522 32708 40574 34930 26853 25628 25553 28834 32142 38175 34205 40115 32781 52797 45310 46597 35333 36100 55142 31887 38040 45068 38662 36506 34254 glycolate 46373 47944 45494 39057 34400 40734 40863 44083 39613 41721 44749 30865 31101 36602 32496 32450 41984 42306 42120 35780 38181 34564 38679 42458 42584 50790 31612 35673 30492 36840 39248 50636 46667 46125 40230 30897 39384 39772 39357 52175 46168 50213 36074 34352 33315 36917 44051 41347 39978 32450 36440 38873 39257 47646 34880 34691 31246 35167 37154 GMP 149590 186911 201168 193602 111025 192071 191588 193199 173142 140078 241217 82282 154243 169869 184748 164623 201838 225271 235096 150385 159502 223046 109830 212466 201243 135190 198680 117485 155234 243982 153088 224774 310823 28476 13373 16411 91450 193775 20166 31853 16331 41105 11310 16303 288210 22967 318 5506 23631 18424 16745 24668 46380 31893 128658 13329 10764 guanidinosuccinate 179 120 164 1317 296 2028 1612 1763 1921 635 257 59 92 330 1086 4694 1575 2957 934 612 1979 guanosine 491 2801 5760 730 157 1282 14920 783 2928 1658 9855 2233 2041 3123 3916 770 444 4942 14519 1566 2105 3146 3094 1799 512 5115 126 heptadecanoate 198080 303928 151552 84746 120975 136195 112763 183811 335006 301412 268213 175360 178946 208884 115309 97553 363384 285347 208206 120414 250489 158615 219144 213786 316934 336350 166109 150960 184020 192621 111126 107763 211656 77413 51975 114050 90529 89809 166083 258458 209072 206562 83406 166029 154466 107419 319661 327767 133879 138347 228403 97772 192044 370007 139907 153286 166595 206140 97762 hexose diphosphate 3123 5442 2953 204 799 1520 210 576 950 1074 12612 59654 8535 20419 28125 25296 19652 25667 17260 17206 18905 13665 22620 6890 21960 14125 2607 21798 19175 16222 9326 13575 17529 25901 10867 16905 hexose monophosphate 24704 40244 17493 22498 24572 51849 34440 51579 15972 21759 24300 48410 21317 31017 34213 39592 19266 24072 37410 51330 28733 9352 50359 15392 23894 21364 38272 31256 27647 36047 23815 29520 11374 55624 67911 81178 127999 177697 43394 34163 41633 49474 85179 49672 39404 51345 23279 44523 46212 28787 45470 109443 52884 31724 51049 52364 29808 42315 35169 hippurate 615744 721580 699339 451616 35283 44009 22166 35538 10999 16297 23942 23882 5837 10852 19147 34349 11372 16322 10035 20528 28992 8344 16100 8999 6026 5292 38378 56505 9021 21076 26822 662464 750606 680052 433779 32629 49205 14156 37792 26764 30327 30742 14518 14520 12711 36269 18573 18536 25103 10812 30569 11776 16977 11483 42289 48683 17035 18508 23738 histidine 435772 455440 565282 631921 652557 560608 571668 600381 484974 592867 432395 731167 553501 530465 526543 653402 483985 551443 434873 630332 594737 508378 727288 466949 445893 483311 563573 762205 518958 547477 738433 345747 341650 489265 474866 558205 497402 470651 554104 412893 426555 339462 426366 487844 484638 724535 446034 503716 577358 679452 586397 449917 678731 411488 648620 639587 435048 462473 659513 homovanillate 9454 13127 10051 16219 13242 9041 7431 6645 6779 6434 6373 12033 8629 8978 3100 10671 6917 9891 4546 11636 9226 9174 26420 5358 9150 25094 11663 13410 9251 8408 15953 21172 10773 26659 30929 4625 16008 9116 1432 20425 11337 5667 9360 4120 2614 5354 3730 2485 9137 16867 5575 8859 11940 11321 7385 8234 4480 4479 9015 hydrocinnamate 7898 14936 19790 6007 30488 37628 29693 13581 114 82 hydroxyisovalerate/2-hydroxy-3-methylbutyrate 819263 973948 796579 835258 636419 757443 662771 645826 1423004 1393984 1767007 863504 1120039 1380139 1155850 1104277 1527884 1427293 1385876 1443870 1086874 1132473 978116 1553006 1615007 1941125 1313976 1088867 876702 1363928 1172266 990627 1176711 744164 824894 530547 889308 685102 782540 1590095 1520447 2351758 1269369 1265619 1201746 1029939 1332512 1554750 1452796 1244219 1180089 943369 1083989 1913190 1475019 1333525 1097787 1336061 1107181 hypoxanthine 140437 18420 161067 222731 678459 319512 346939 72405 390070 356183 177823 249442 322916 178517 16471 3943 302746 356933 337464 88581 116320 240522 167345 360986 645211 170766 301679 251185 146559 30751 6634 112873 11118 39193 48042 29029 82637 170188 5261 247523 94949 51400 57996 10346 48217 1242 1668 imidazolelactate 16922 12966 15422 25839 16793 19670 17226 12421 11227 11398 8665 21925 9288 11313 16168 18622 14317 18369 14452 31213 27235 17212 23351 17030 8618 8640 14937 17607 16102 15557 17072 7966 11512 9496 17240 14146 13306 11686 11907 11557 10441 6288 5658 8713 13384 20526 14337 17940 12004 25092 23338 16094 20965 7842 12685 17192 15113 16231 14006 IMP 1338 4299 3941 4168 284 5108 196 32498 2813 2706 723 429 15803 18478 23264 12197 116873 5862 8272 5436 4838 31813 10720 3307 4795 11596 8775 8039 6050 1898 2920 49863 1897 1107 17610 932 24275 16327 4009 212 1035 620 4268 4609 1939 4531 5180 480 1220 1286 2505 1264 1407 6131 indole-3-propionate 23466 18247 5880 14081 11666 13311 2835 2770 19547 12120 9167 15917 4646 11721 2977 805 indolelactate 10303 15985 11199 9034 7862 7393 5789 5922 14274 9721 10344 8025 12572 13707 3985 7802 14424 15068 17098 11296 8412 6737 18291 7089 17600 30000 7021 9938 9108 5219 8989 15186 12035 16439 14995 2971 12366 6781 3498 19605 8199 8934 8398 8803 5022 6511 10932 14773 10064 14759 5210 7981 13151 19251 5576 7702 4811 5257 4867 indoxylsulfate 30054 125462 32115 10902 120465 17257 3450 9282 35283 306 2108 10406 27874 7192 512 530 10810 48565 1733 9066 5499 6629 140928 63396 159467 318912 77034 108570 84820 991 239719 1550 93 16958 719 428 1678 411 2114 589 1074 inosine 56841 36924 67807 104358 414098 104640 112356 30838 357779 120905 92206 171598 331904 153787 6978 7522 126594 164442 196057 43368 59492 88639 77924 214078 497614 114639 158228 140203 121910 23472 11100 51142 9922 24488 17239 10274 24544 44993 125 214924 5899 266 9440 22423 212 11816 809 181 isoleucine/leucine 5410260 6035783 8715596 7180675 7946658 7180481 7124657 7344893 6621332 7968932 6689356 10503372 6485921 5948496 5521308 7096678 7209065 8828540 7021340 8766824 6780154 6833734 7850447 5974966 7361821 6058814 7537427 8708934 6756328 6690645 6703481 5349577 6212373 12120009 6942301 9579479 8418653 8890013 8172955 9040295 7708971 7004764 8261541 6843273 5977035 10786543 7464923 8669287 10901290 10875698 7863146 9712199 9023135 5285271 11776101 9524804 6355901 7278570 7683624 isovalerate/valerate/methylbutyrate 2669 1427 949 2004 3447 1639 2852 4310 3133 4010 3661 6320 6243 3035 3589 2609 3264 3889 5092 2229 4039 634 1253 2553 1546 1886 5418 2374 1607 1130 8424 11959 2213 1071 32417 11783 1848 37427 3888 2917 4877 3459 38813 18959 30199 4758 5537 6692 3992 4207 3257 1890 2184 6957 5273 4304 3224 4432 kynurenine 2699 490 5343 4329 1717 2253 3806 2407 481 1754 2952 5031 1551 2603 1870 4930 3417 1026 2732 3593 4704 2844 4965 2643 3168 1599 4342 2383 1112 2846 3129 2050 1553 2446 1799 1422 2299 2014 1895 1305 1378 1854 1370 2339 1004 2634 1962 990 2125 1394 2930 2981 3584 998 3593 2117 637 1751 2699 lactate 7693769 6615953 7449101 9286896 10434303 8337027 8165342 6870576 7795078 7878368 6403683 8976576 6653407 5622703 3089760 6747698 5773290 5288724 7135060 6747728 6731248 8246868 6181157 6289231 8111409 7155901 6421747 8140584 6366761 3270315 6880572 5560997 4591834 7047698 8849851 6282750 8059490 5951035 4819218 7097473 4266810 3234092 5517368 3800576 2599670 5209983 3479716 3710272 5330551 4801952 4068393 6840050 6052955 3311263 3895903 5883816 4756227 2624680 3386209 lysine 650351 579983 769745 883027 944209 773892 693229 776012 584802 720373 515538 1259265 842635 732327 780104 1063143 620231 573367 554606 1046917 866073 690903 888214 879623 548919 600330 1129985 1203033 675377 908769 865418 530942 511795 846844 646359 820416 650727 614146 695474 501339 456487 415295 557182 680724 730930 1212222 555270 505153 888591 1053440 813509 575685 865461 497792 1384227 1097590 562129 875469 786571 malate 7466283 5577133 6094532 7356585 7088930 9658083 7902410 9896750 7273385 6096687 6914128 7323983 7004846 7047340 6755319 7742555 5897493 8577268 6697037 7697384 8091825 6063608 10019626 6596667 6563785 7721910 8844717 8840757 6770255 7225474 7796436 6505069 6395344 7270289 9005243 10091423 10833089 8943575 10439087 6716056 8056247 6460372 7550465 7568697 7585625 9288641 7469369 9241909 7939315 8881852 9333957 8623568 10645588 8632047 8006923 9218608 7502227 9383505 9095233 malonate 89581 73974 76237 80508 78331 80388 76757 83163 89610 85287 98403 82379 81474 94453 86352 77637 102952 116604 96463 84903 83303 82164 70881 78342 100221 89305 74102 79006 77085 78400 65254 86412 70714 89879 76322 75950 93743 62775 78646 81901 91403 101811 98742 99106 96254 75466 108502 133829 91177 65559 91703 96334 80211 96041 85756 89182 86138 90061 71330 mesaconate 71026 52127 56200 60410 46900 64899 50941 74859 82328 51963 97921 64932 73790 85485 51166 82488 74032 117879 94528 89503 84836 64403 140799 71483 93386 181734 100845 78949 75440 68954 79020 69022 77057 92519 104639 110975 123019 108737 70601 96339 92203 116746 91080 80223 80220 121384 93055 170833 129880 133778 126680 107681 199772 209824 104539 117791 77434 100754 110712 methionine 692146 683754 811790 1460330 1254608 1108690 781746 1053808 538620 741099 447579 1557971 674493 649550 719722 1288863 509293 505252 471918 935461 847656 677701 811206 638669 432013 511453 1034760 1435012 788136 1051979 1069637 431438 468663 502139 954464 1270495 797958 702841 1026401 380563 453198 364309 396815 537043 704585 1546887 419081 497464 986711 1168979 843785 521367 774411 426505 1411071 1250181 634143 1085016 1040814 methylcysteine 220 92 199 419 246 1581 1704 3640 1150 5614 9882 1333 2358 3617 3491 6817 1728 536 7624 8442 8155 1619 1655 318 5720 5521 742 303 309 514 95 884 1138 1610 1850 80 368 210 125 1525 648 138 2964 892 858 652 methylsuccinate 188486 139690 133208 130468 156729 170489 157880 171466 146135 197663 125353 176906 149660 143438 93618 142525 122869 136665 112701 149630 166613 143402 160074 169026 175665 168041 145572 201501 156469 116647 136334 226768 191339 207635 169983 189172 199165 161479 136133 159092 235329 124191 139960 148627 97152 122346 154523 114185 146052 102586 108207 136670 144131 134344 264609 314856 234721 116879 135750 mucate/saccarate 1403 1438 839 4905 570 2664 141 179 119 169 102 176 113 677 251 285 180 188 76 274 1113 947 1515 8676 418 153 1540 188 489 762 679 95 197 138 781 428 359 73 919 317 82 130 87 N1-methyl-2-pyridone-5-carboxamide 123672 138646 201075 173226 165752 120685 126217 103093 154095 109826 148115 137192 174736 176978 165941 123382 119182 147150 143655 206550 141707 126436 89281 84803 134224 64710 124980 106808 113391 116648 44957 125232 158929 256793 213293 133667 126625 141202 101899 167638 126821 163508 188951 166998 173371 144457 115841 163605 188425 262928 139809 150937 89102 62991 134578 117554 119435 116459 49951 N6-acetyllysine 23786 30621 39055 42561 39021 34309 29225 37872 21104 22218 17877 22506 22025 19957 16993 21862 25339 21882 21674 25445 23142 15505 24789 27826 21771 21647 21476 24951 19853 19628 19817 21245 21820 35651 38445 22365 32013 25049 29048 17574 14968 16207 19423 17782 18567 18870 22085 18713 19926 19315 19839 14708 21118 20547 21992 20794 13590 14666 16760 N-acetylglutamate 73325 49556 150489 107723 75539 77767 112152 57779 83833 99043 93059 176274 54558 79443 59311 150983 96432 196430 129446 138857 134216 69049 129853 96665 103010 95182 100311 143995 76348 97904 83143 101072 55610 1028286 1050319 436394 782835 841583 223907 142107 1034657 707943 492869 316664 301306 740838 89639 687668 508747 455737 546799 519417 547544 479837 558572 821910 404236 524485 453622 N-acetylglutamine 754412 604879 888986 1012411 849372 713031 998187 748179 312912 282945 405505 584544 325402 374716 436192 639537 367679 579131 591108 742715 659970 400500 545957 377644 338325 409071 555279 605037 288752 424652 308140 1063296 686945 1107474 1486541 430534 963128 775140 558222 649261 393815 423522 533293 349554 310108 553552 404132 416536 486546 374241 410684 649396 387515 335562 424726 468381 258106 316238 241494 oxalate 61255 96681 87525 66501 72702 67743 67526 80307 78970 75781 70207 94560 106742 96421 89050 91388 87356 82433 79198 109388 71695 87769 70273 116428 88154 68276 84669 79797 85763 97934 86629 78691 82100 75060 122774 87466 96301 70566 79589 80566 79731 82736 112072 104495 92044 78893 86874 79665 60705 80579 85739 87886 84399 79025 93135 89410 90024 97649 83368 pantothenate 558102 457923 704805 871376 973315 715060 792740 687865 532539 519656 559238 857414 926839 895793 847357 911392 524476 847439 566801 831725 908611 746081 1183315 596037 563202 859691 782458 1038243 702819 627484 769900 421289 424753 526070 577285 856803 639661 606939 819655 612434 474875 494890 602530 743752 749577 950438 499865 818145 773076 786787 777492 603775 839651 762293 863741 1087931 793935 655577 636559 pentadecanoate 137590 257266 142851 58865 85300 131441 93228 192217 152204 132392 116241 78223 93438 108613 58707 60597 174689 141889 103912 64713 125295 87130 116606 131627 154010 164878 91092 71014 95615 81799 69262 75214 125409 58927 48195 103448 77939 74471 122772 117756 82894 87393 49654 81675 80046 60798 147224 124769 82285 60651 109300 52935 97362 135746 60814 68038 65432 74748 49258 pentose monophosphate 101289 100707 108163 112669 108184 80394 118829 77999 146456 95646 117304 118379 165510 189590 84169 58097 122389 168278 136292 111165 105623 92890 137341 162372 159412 127011 142822 118546 134427 124504 74505 108864 85457 45492 50337 51165 49931 72702 28429 133723 28303 32070 33930 33002 16611 19331 134850 23823 30520 19969 19682 42605 33040 26679 30898 24251 36197 16382 16167 PEP 496 508 140 507 39 3651 599 566 262 35 9317 5188 5401 7878 7238 2470 264 2254 2076 6410 6585 4061 4853 4537 4162 4189 4218 5629 4698 3716 5231 5107 7131 3197 2909 phenylalanine 1924092 2237876 2877173 2809804 2882663 2538976 2416087 2578159 1763134 2076926 2032566 2932184 2029817 1906879 2026248 2870218 1866522 2279865 2013218 2624982 2244240 2039596 2957507 1805791 1887176 2285872 2463561 2973467 2105489 2251027 2748279 1973675 1954673 3355331 2774344 2940039 2807678 2634367 2524252 2330957 1944604 2020230 2158261 1887274 1760047 3343705 1690949 1913240 2496942 2878409 2168145 2523826 2847779 1855445 3073573 2541386 1756373 2166343 2668800 phosphocreatine 1727 1645 1651 2527 954 1327 827 6607 282 958 1126 2218 408 1540 4632 5893 1373 707 3999 1429 164 4127 2018 394 3935 1984 1722 1925 1445 1722 2359 2146 8583 10600 6473 7171 7269 4345 2964 6543 3538 3798 6930 6704 5975 6185 8417 3958 4683 5488 5177 7442 6513 10954 4365 4667 3966 5098 proline 406150 398557 520883 818131 783059 695744 462443 721061 378435 587954 340039 1222928 373263 342832 338534 978105 349302 386873 341813 893307 582014 379316 679784 408643 310594 383791 642278 1459005 419438 720755 886036 277075 355381 413124 504746 866273 572847 408443 941623 317633 373198 270626 234780 407155 377964 1626230 454530 607534 1051496 1384751 774601 339321 787000 403745 1207008 1708687 574041 864285 982246 pseudouridine 2641181 2488590 2975632 2438136 2065845 2392767 2246233 2262671 2372156 1914177 2175643 1266515 2206769 2211185 2046289 1829877 2427148 2432742 2576837 2105990 2347382 1868012 2466394 2454082 2508572 3222441 1903274 1739219 1900992 1839800 1890438 2544842 2125307 2831276 2282678 1812765 2487225 2332130 2057280 2566735 1913071 2135138 1931759 2153042 2235799 2030804 2468071 2750270 1963135 2038310 2368148 2071800 2569935 3022811 2208457 1707984 1698704 1830574 1760734 pyruvate 196741 250872 257842 478860 188631 342605 252311 551112 220271 185020 162340 254111 248218 296183 300092 346396 197396 167560 201317 188106 217788 152842 540423 243502 169927 356803 234529 282212 254992 318443 440501 159280 101954 241650 201556 241375 157484 92027 376084 150054 118504 86531 83455 589758 164121 580357 187131 606483 159538 337861 447309 147295 605048 312197 474017 524191 556861 203892 402420 quinolinate 9138 7482 11246 8933 10385 14089 11744 10691 16162 9890 18955 22539 16156 22217 7931 28456 14797 18554 16496 19931 29057 20340 13140 9959 13814 12205 16854 13892 7549 23507 5705 8957 7745 15283 12892 9775 20814 21864 9177 18984 11153 18760 21228 17296 7464 24940 12946 16274 25589 24101 24729 21883 13453 9415 14068 15500 6902 21989 5465 sebacate 180621 103880 111602 53306 49387 55099 73854 58364 53610 46054 45076 36523 60106 68278 40075 39948 55809 77076 54193 36869 49728 39922 63228 57616 58384 54824 46659 56274 66646 40726 73552 257682 158391 174605 78157 107442 83841 125844 68805 98579 96522 80437 75403 101868 69464 73896 111138 123478 141403 85021 67359 72367 53801 73039 64953 60028 81242 62126 83318 serine 155695 156931 182613 248354 278505 256568 201485 240865 175714 226290 152086 303432 242140 224078 217285 278511 163866 172635 153679 261343 271749 215383 268410 224296 164424 159099 262509 357685 240888 266460 319575 76911 101058 101864 127749 276076 178996 135892 265706 109303 120460 100412 121457 220467 215495 370322 136716 181523 231997 307946 274764 137417 258025 126814 346517 306696 218689 280905 301634 sorbitol 4584208 1856166 2720499 2483968 1993286 1936330 2234715 1919337 2241698 2147960 1770435 3492370 2651905 1815358 2210316 2153365 3005289 2716830 2186805 1796086 2451558 3026947 2789933 3070490 2385221 2849464 2972299 4572686 2421553 2148198 2532627 3221125 2435062 2204395 2207858 6103813 1829355 2948094 1844169 1827495 3377509 1554955 1439500 2063760 3129160 3066125 2809932 3318492 3624242 3320087 2621042 3027627 3070899 2008112 3282391 4738151 4392948 3302226 9505840 suberate 35491 31311 33553 38864 26870 29046 32659 33911 39245 36264 34782 31349 39760 39426 25375 30909 39726 41953 29323 30118 40664 32493 35018 36898 34973 39524 34929 41346 29751 33071 29472 64294 55705 59653 41314 57984 35206 46517 33302 66244 55094 52764 43038 57004 41308 45541 60691 56408 99473 46918 49209 46544 33662 44826 44875 43956 37295 49254 36113 succinate 5748690 5705997 4762309 3949106 5787851 4471314 4594098 2189242 4777140 6046874 4177786 5683905 3943115 2602486 1019772 3195549 5444884 4230465 5098712 2957646 3988847 4531892 3713139 5286336 5443239 4024547 2905364 4467415 4436994 1481507 2667243 5862738 4135166 5490946 5092630 2600692 4947688 3381818 1410925 5351237 4372871 3218333 2805973 1651738 1013464 2133203 3105141 2972045 2133551 1931250 2082829 2772405 3020432 1607583 1663062 2787807 2652445 943337 1270289 sucrose/lactose/trehalose 129927 115934 164322 193278 146962 122415 365588 167059 99164 221184 182623 302734 152491 110097 106593 244599 74646 160030 96583 295516 344059 137796 274883 94732 83556 71975 591966 568733 111674 275365 182297 130445 332313 249386 458147 1476230 416914 916788 108593 279629 338446 220566 415219 271099 100496 260076 261186 127956 681072 248700 387946 282213 179575 73197 796632 719992 133409 337080 186100 taurine 1814666 2294907 3121201 2546085 2348032 2260484 2484400 2843607 3607835 2586543 3334580 3892742 3085406 3351535 3295819 3611114 2653055 5923172 4362020 3835787 3822219 3347547 4983145 4342432 3123857 4374338 4184785 3671411 3104621 2992016 2865230 1112265 2320706 2230522 1528152 2682027 1373889 2487686 2481554 3068709 2417518 2746402 2048230 2699520 2472831 3106794 2776105 4071398 2966272 2684401 3070802 3555055 3519068 3859698 3043821 2863429 2375578 2509778 2465297 taurocholate 2097102 25863 326702 41999 31510 460381 2806737 109946 60694 2421 77203 3622 12653190 16408477 3128056 118559 160919 2777931 110254 459600 337045 914884 47779464 2440 79445 25253721 307662 20978 22922 60950 8486548 12481908 8451463 5977628 3580577 1925352 3573896 3821806 3926612 1570757 338624 8709957 3431331 11660445 9918626 14373919 18037575 36570948 34011014 30745870 20823489 14458414 61714275 31420032 20753703 3678698 9745762 4185171 8691997 taurodeoxycholate/taurochenodeoxycholate 160237 18799 36071 12726 4155 52312 277445 31047 22473 10067 49014 22330 1920510 2614064 267611 29571 36802 192196 22945 31545 44285 67900 2435339 16292 14767 1301345 58813 12104 9806 30739 665915 1719063 1366212 899042 440706 297349 577177 578511 446355 266233 217682 1673846 538360 2212854 1312109 1912551 1262223 2625882 3256582 1782558 1884639 714237 3231736 1567602 2433039 559683 1062554 587266 821330 threitol 40000 29358 32899 32194 23130 30321 26829 34501 31241 24381 28360 24828 24324 26329 23442 26163 31575 27875 26847 23298 30999 22943 27280 30562 27160 33074 19065 20814 19250 24009 22718 40487 25075 34766 36038 24847 35069 33593 28645 29536 20085 28211 22642 25063 27978 24854 31231 27834 26408 25801 34340 24727 31411 32293 23797 22030 15647 21287 22460 threonine 167937 154354 201043 296167 261324 297491 176504 265976 247371 260213 178383 490382 205645 179502 215687 321005 176472 190478 142918 289907 268348 206535 193213 201159 169853 119156 247540 314456 201336 272912 205604 102458 102750 149217 200290 242301 229496 139425 277026 155154 154352 138272 155366 179018 190940 344110 154010 167103 251469 305362 307671 169384 182414 99389 291648 299860 185011 258569 213409 thymine 114473 136410 312953 254666 272087 247981 202554 269752 233611 198879 178023 226019 266583 232760 254229 240284 200324 153221 222706 165474 174726 160793 240099 263021 215864 250738 235932 200885 225750 259337 292368 45317 83248 188401 138299 232146 172082 145727 288245 101429 92273 134113 112590 205129 287388 247912 173593 158098 196373 225344 185374 105216 236825 245163 304296 203138 196984 240118 278811 tryptophan 444352 539410 558457 447671 658143 483580 377834 411498 673149 516850 577591 806384 713507 591365 356631 613866 603387 625904 616708 654846 615491 682828 850344 625901 810974 891945 606318 714538 555953 566614 654720 643616 500804 907506 651035 538482 613436 750377 332466 1020542 490066 592107 651289 481225 349165 487406 540325 499642 620884 1038050 515622 683431 598339 521397 543209 491268 393977 498080 519823 tyrosine 171321 155038 191243 359776 332722 241444 195931 245819 189449 262484 169163 470469 217248 221987 211975 527602 197392 203928 152645 317139 352847 280566 442875 162825 176839 220621 393320 482335 276191 401427 567268 152615 144109 245709 323420 292625 249729 203880 247589 229938 191189 146073 212621 225668 206489 505239 179892 178291 355150 431395 342005 269732 379837 188325 489765 461609 246324 397717 521088 UMP 39019 55590 54420 54656 35512 59235 47920 56678 50892 36723 68918 26794 48600 45800 53541 42569 42442 76122 67551 45141 50487 50559 39734 63557 49486 39189 55784 37380 40616 67208 44272 58100 72548 15216 5270 13455 13411 19435 5835 64610 3223 3510 3352 13867 3803 2334 80836 13176 9915 3805 8300 2328 10694 12929 16329 14103 12486 205 796 uracil 434560 480044 460482 337007 477646 390140 459947 221170 400957 485402 379393 439023 369017 321639 185389 322649 547495 410167 489137 335443 404645 479937 287948 350329 635978 477202 262014 316814 362763 180941 344309 481113 439509 555447 277293 251728 488646 473334 101599 477051 465461 345191 376291 178392 134273 264301 314302 302506 232017 139082 132055 417277 182967 219691 133916 249089 365247 89625 157256 uridine 7585903 7758846 7617388 5449458 8354871 6717230 8317740 3700613 6706038 7932688 6343566 7114324 5849690 5101602 2919517 5204479 8561113 7261038 8425160 5599472 6824498 7618493 4455724 5796869 10747664 7455754 4452667 5467777 6365391 2952421 5362673 8171407 7725916 9241827 4884621 4039381 8551762 7834099 1658118 8207326 7590512 5889853 6342487 2929732 2046185 4557411 5004145 4774794 3784157 1995542 2038617 7747507 2623439 3352178 2234771 3982201 5456074 1477256 2484238 valine 2551543 2557414 3538955 3372797 3121410 3489652 2879112 3477721 2873702 3345220 2673229 5682827 2797393 2678965 2501008 3769362 3096731 3462799 2796231 4269718 3663835 3234300 3621166 2539576 2834520 2275969 3240673 4615261 3047696 3663511 3313474 2465163 2476929 4364126 2947846 3215572 3633145 3449647 3420605 3288778 3381808 2668271 3036009 2687709 2529230 4740169 3248116 3210579 4811980 4841660 3896429 3840137 3794655 1947282 4178717 4524576 2603859 3572210 3507053 MS_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name Study_Compound_ID MZ RT HMDB_ID thymine-d4 QI1 129.0609 1.28 Internal Standard inosine-15N4 QI2 271.0618 3.13 Internal Standard glycocholate-d4 QI3 468.3273 3.64 Internal Standard 10Z-heptadecenoate QI4 267.2331 2.97 HMDB60038 1-methylhistidine QI5 168.078 3.21 HMDB00001 2-aminoadipate QI6 160.0617 4.97 HMDB00510 2-aminooctanoate QI7 158.1187 2.35 HMDB00991 2-hydroxy-3-methylpentanoate/hydroxyisocaproate QI8 131.0715 3.23 HMDB00407* 2-hydroxyglutarate QI9 147.0301 6.43 HMDB59655* 2-isopropylmalate QI10 175.0612 6.66 HMDB00402 2-phosphoglycerate QI11 184.9861 8.95 HMDB00362 3-methyladipate/pimelate QI12 159.0664 6.36 HMDB00555* 3-methylhistidine QI13 168.0781 3.76 HMDB00479 3-phosphoglycerate QI14 184.9859 8.77 HMDB00807 4-hydroxybenzaldehyde QI15 121.0296 2.31 HMDB11718 4-methylcatechol QI16 123.0453 1.08 HMDB00873 4-pyridoxate QI17 182.0462 3.32 HMDB00017 5-dodecenoate QI18 197.1549 3.13 HMDB00529 6-phosphogluconate QI19 275.0174 8.38 HMDB01316 acetylalanine QI20 130.0511 3.56 HMDB00766 aconitate QI21 173.0092 8.8 HMDB00072* adipate/methylglutarate QI22 145.0508 6.36 HMDB00448* adonitol/arabitol QI23 151.0613 1.66 HMDB00508* ADP QI24 426.0226 9.4 HMDB01341 alanine QI25 88.0404 3.14 HMDB00161 alpha-glycerophosphate QI26 171.0067 6.93 HMDB00126 alpha-keto-beta-methylvalerate/alpha-ketoisocaproate QI27 115.0402 3.1 HMDB00491* aminobutyrate QI28 102.0561 2.87 HMDB00650 AMP QI29 346.0563 7.29 HMDB00045 arginine QI30 173.1045 4.17 HMDB00517 ascorbate QI31 175.0249 8.44 HMDB00044 asparagine QI32 131.0463 3.69 HMDB00168 aspartate QI33 132.0304 4.88 HMDB00191 ATP QI34 505.9887 11.36 HMDB00538 azelate QI35 187.0978 6.33 HMDB00784 butyrate QI36 87.0452 3.54 HMDB00039 caffeate QI37 179.0351 7.35 HMDB01964 caproate QI38 115.0766 3.38 HMDB00535 caprylate QI39 143.1078 3.21 HMDB00482 chenodeoxycholate/deoxycholate QI40 391.286 3.79 HMDB00626* cinnamoylglycine QI41 204.0668 3.62 HMDB11621 citrate/isocitrate QI42 191.0199 8.59 HMDB00094* citrulline QI43 174.0886 3.45 HMDB00904 CMP QI44 322.045 7.2 HMDB00095 corticosterone QI45 345.208 1.18 HMDB01547 cystathionine QI46 221.0603 5.09 HMDB00099 cystine QI47 239.0167 5.67 HMDB00192 cytidine QI48 242.0784 1.99 HMDB00089 DHAP/glyceraldehyde 3P QI49 168.991 7.86 HMDB01473* docosapentaenoate QI50 329.2489 2.91 HMDB01976 eicosapentaenoate QI51 301.2175 2.94 HMDB01999 ethylmalonate QI52 131.0351 6.71 HMDB00622 fructose/glucose/galactose QI53 179.0563 2.02 HMDB00122* fucose QI54 163.0614 1.56 HMDB00174 fumarate/maleate QI55 115.0038 6.56 HMDB00134* furosemide QI56 329.0006 3.7 HMDB01933 GDP QI57 442.0176 10.26 HMDB01201 gemfibrozil QI58 249.1498 3.05 HMDB15371 glutamate QI59 146.046 4.84 HMDB03339 glutamine QI60 145.062 3.47 HMDB00641 glutathione oxidized QI61 611.1479 7.44 HMDB03337 glycerate QI62 105.0194 3.99 HMDB00139 glycolate QI63 75.0087 3.91 HMDB00115 GMP QI64 362.0512 8.13 HMDB01397 guanidinosuccinate QI65 174.0522 4.83 HMDB03157 guanosine QI66 282.0846 2.84 HMDB00133 heptadecanoate QI67 269.2486 2.96 HMDB02259 hexose diphosphate QI68 338.9892 9.67 HMDB01058* hexose monophosphate QI69 259.0224 7.08 HMDB00124* hippurate QI70 178.0512 3.63 HMDB00714 histidine QI71 154.0623 3.76 HMDB00177 homovanillate QI72 181.0508 4.1 HMDB00118 hydrocinnamate QI73 149.0609 3.52 HMDB00764 hydroxyisovalerate/2-hydroxy-3-methylbutyrate QI74 117.0558 3.26 HMDB00407* hypoxanthine QI75 135.0314 2.99 HMDB00157 imidazolelactate QI76 155.0463 4.17 HMDB02320 IMP QI77 347.0403 8.34 HMDB00175 indole-3-propionate QI78 188.0719 4.15 HMDB02302 indolelactate QI79 204.0668 4.11 HMDB00671 indoxylsulfate QI80 212.0025 3.55 HMDB00682 inosine QI81 267.0735 3.14 HMDB00195 isoleucine/leucine QI82 130.0875 2.48 HMDB00172* isovalerate/valerate/methylbutyrate QI83 101.0608 3.44 HMDB00718* kynurenine QI84 207.0777 3.02 HMDB00684 lactate QI85 89.0245 3.65 HMDB00190 lysine QI86 145.0983 4.95 HMDB00182 malate QI87 133.0144 6.56 HMDB00156 malonate QI88 103.0037 6.75 HMDB00691 mesaconate QI89 129.0195 6.43 HMDB00749 methionine QI90 148.0439 2.95 HMDB00696 methylcysteine QI91 134.0283 3.3 HMDB02108 methylsuccinate QI92 131.0351 6.41 HMDB01844 mucate/saccarate QI93 209.0305 6.61 HMDB00639* N1-methyl-2-pyridone-5-carboxamide QI94 151.0515 1.24 HMDB04193 N6-acetyllysine QI95 187.109 2.82 HMDB00206 N-acetylglutamate QI96 188.0566 6.27 HMDB01138 N-acetylglutamine QI97 187.0726 3.73 HMDB06029 oxalate QI98 88.9881 7.07 HMDB02329 pantothenate QI99 218.1036 3.66 HMDB00210 pentadecanoate QI100 241.2175 3.01 HMDB00826 pentose monophosphate QI101 229.012 7 HMDB01548* PEP QI102 166.9754 9.22 HMDB00263 phenylalanine QI103 164.0719 3 HMDB00779 phosphocreatine QI104 210.0288 6.41 HMDB01511 proline QI105 114.0561 2.93 HMDB00162 pseudouridine QI106 243.0622 2.17 HMDB00767 pyruvate QI107 87.0088 5.16 HMDB00243 quinolinate QI108 166.0148 7.07 HMDB00232 sebacate QI109 201.1135 6.29 HMDB00792 serine QI110 104.0354 3.81 HMDB00187 sorbitol QI111 181.0719 1.77 HMDB00247 suberate QI112 173.0821 6.34 HMDB00893 succinate QI113 117.0194 6.49 HMDB00254 sucrose/lactose/trehalose QI114 341.1094 2.3 HMDB00258* taurine QI115 124.0075 3.46 HMDB00251 taurocholate QI116 514.2848 3.34 HMDB00036 taurodeoxycholate/taurochenodeoxycholate QI117 498.2898 3.19 HMDB00896* threitol QI118 121.0508 1.5 HMDB04136 threonine QI119 118.0511 3.43 HMDB00167 thymine QI120 125.0358 1.28 HMDB00262 tryptophan QI121 203.0829 3.24 HMDB00929 tyrosine QI122 180.0668 3.49 HMDB00158 UMP QI123 323.029 7.23 HMDB00288 uracil QI124 111.0201 1.68 HMDB00300 uridine QI125 243.0623 1.68 HMDB00296 valine QI126 116.0718 2.72 HMDB00883 METABOLITES_END #END