#METABOLOMICS WORKBENCH TEXT OUTPUT STUDY_ID:	ANALYSIS_ID:	
VERSION             	1
CREATED_ON          	2017-06-17
#PROJECT
PR:PROJECT_TITLE    	Antibiotic treatments and Breast Cancer
PR:PROJECT_TYPE     	MS analysis
PR:PROJECT_SUMMARY  	Breast cancer model mouse have gone through bariatric surgery and antibiotics treatments.
PR:INSTITUTE        	University of Michigan
PR:DEPARTMENT       	Surgery
PR:LABORATORY       	Seeley Lab
PR:LAST_NAME        	Seeley
PR:FIRST_NAME       	Randy
PR:ADDRESS          	Ann Arbor, MI
PR:EMAIL            	seeleyrj@umich.edu
PR:PHONE            	734-615-2880
PR:FUNDING_SOURCE   	
PR:PROJECT_COMMENTS 	
PR:PUBLICATIONS     	
#STUDY
ST:STUDY_TITLE      	Effects of bariatric and antibiotic treatment surgery on mammary carcinogenesis
ST:STUDY_TYPE       	MS analysis
ST:STUDY_SUMMARY    	The purpose of this study is to understand the effects of bariatric surgery on mammary carcinogenesis in C3 Tag (1) mouse model. My animals have gone through antibiotic treatments in drinking water vs. no abx in their water. Also animals have been though vertical sleeve gasteroctomy (VSG) vs sham surgery vs no surgery group. It is expected that these surgeries will affect the tumor proliferation and growth. One potential explanation can be the changes of SCFAs following the bariatric surgery.
ST:INSTITUTE        	University of Michigan
ST:DEPARTMENT       	Biomedical Research Core Facilities
ST:LABORATORY       	Metabolomics core
ST:LAST_NAME        	Kachman
ST:FIRST_NAME       	Maureen
ST:ADDRESS          	6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
ST:EMAIL            	mkachman@med.umich.edu
ST:PHONE            	(734) 232-8175
ST:SUBMIT_DATE      	08/24/2016 12:39:20 PM
ST:NUM_GROUPS       	5
ST:TOTAL_SUBJECTS   	36
ST:STUDY_COMMENTS   	
#SUBJECT_SAMPLE_FACTORS:          	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Additional sample data
SUBJECT_SAMPLE_FACTORS            	SU0015748	S00024574	Antibiotic:yes | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015749	S00024575	Antibiotic:yes | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015750	S00024576	Antibiotic:yes | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015751	S00024577	Antibiotic:yes | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015752	S00024578	Antibiotic:yes | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015753	S00024579	Antibiotic:yes | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015754	S00024580	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015755	S00024581	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015756	S00024582	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015757	S00024583	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015758	S00024584	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015759	S00024585	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015760	S00024586	Antibiotic:yes | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015761	S00024587	Antibiotic:yes | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015762	S00024588	Antibiotic:yes | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015763	S00024589	Antibiotic:yes | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015764	S00024590	Antibiotic:yes | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015765	S00024591	Antibiotic:yes | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015766	S00024592	Antibiotic:yes | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015767	S00024593	Antibiotic:no | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015768	S00024594	Antibiotic:no | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015769	S00024595	Antibiotic:no | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015770	S00024596	Antibiotic:no | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015771	S00024597	Antibiotic:no | Surgery:SHAM	
SUBJECT_SAMPLE_FACTORS            	SU0015772	S00024598	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015773	S00024599	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015774	S00024600	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015775	S00024601	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015776	S00024602	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015777	S00024603	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015778	S00024604	Antibiotic:no | Surgery:VSG	
SUBJECT_SAMPLE_FACTORS            	SU0015779	S00024605	Antibiotic:no | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015780	S00024606	Antibiotic:no | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015781	S00024607	Antibiotic:no | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015782	S00024608	Antibiotic:no | Surgery:NONE	
SUBJECT_SAMPLE_FACTORS            	SU0015783	S00024609	Antibiotic:no | Surgery:NONE	
#SUBJECT
SU:SUBJECT_TYPE                   	MOUSE
SU:SUBJECT_SPECIES                	Mus musculus
SU:TAXONOMY_ID                    	10090
#COLLECTION
CO:COLLECTION_SUMMARY             	-
#TREATMENT
TR:TREATMENT_SUMMARY              	-
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY             	-
SP:SAMPLEPREP_PROTOCOL_FILENAME   	A007 - Short Chain Fatty Acids.pdf
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE            	
CH:INSTRUMENT_NAME                	GC_7890N MS_5975 (Agilent)
CH:COLUMN_NAME                    	 ()
CH:METHODS_FILENAME               	WAXPLUS_100-250C_3_SPLITLESS_SIM.M
#ANALYSIS
AN:ANALYSIS_TYPE                  	MS
AN:INSTRUMENT_NAME                	GC_7890N MS_5975 (Agilent)
AN:ANALYSIS_PROTOCOL_FILE         	A007 - Short Chain Fatty Acids.pdf
AN:ACQUISITION_PARAMETERS_FILE    	WAXPLUS_100-250C_3_SPLITLESS_SIM.M
AN:PROCESSING_PARAMETERS_FILE     	-
#MS
MS:INSTRUMENT_TYPE                	Q
MS:MS_TYPE                        	EI
MS:ION_MODE                       	POSITIVE
#MS_METABOLITE_DATA
MS_METABOLITE_DATA:UNITS	uM
MS_METABOLITE_DATA_START
Sample	S00024574	S00024575	S00024576	S00024577	S00024578	S00024579	S00024580	S00024581	S00024582	S00024583	S00024584	S00024585	S00024586	S00024587	S00024588	S00024589	S00024590	S00024591	S00024592	S00024593	S00024594	S00024595	S00024596	S00024597	S00024598	S00024599	S00024600	S00024601	S00024602	S00024603	S00024604	S00024605	S00024606	S00024607	S00024608	S00024609
Factors	Antibiotic:yes | Surgery:SHAM	Antibiotic:yes | Surgery:SHAM	Antibiotic:yes | Surgery:SHAM	Antibiotic:yes | Surgery:SHAM	Antibiotic:yes | Surgery:SHAM	Antibiotic:yes | Surgery:SHAM	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:VSG	Antibiotic:yes | Surgery:NONE	Antibiotic:yes | Surgery:NONE	Antibiotic:yes | Surgery:NONE	Antibiotic:yes | Surgery:NONE	Antibiotic:yes | Surgery:NONE	Antibiotic:yes | Surgery:NONE	Antibiotic:no | Surgery:SHAM	Antibiotic:no | Surgery:SHAM	Antibiotic:no | Surgery:SHAM	Antibiotic:no | Surgery:SHAM	Antibiotic:no | Surgery:SHAM	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:VSG	Antibiotic:no | Surgery:NONE	Antibiotic:no | Surgery:NONE	Antibiotic:no | Surgery:NONE	Antibiotic:no | Surgery:NONE	Antibiotic:no | Surgery:NONE
PROPIONIC ACID	5.432434303	6.893039505	7.590830619	4.702076013	9.704052375	5.462059007	3.957806637	5.030557957	5.91935985	5.23677784	5.302708869	4.63880698	7.097182117	4.479132694	4.857185384	7.415286369	6.19264653	11.61134852	8.039707325	12.23371219	18.0792507	4.783430233	5.242082265	6.827853394	6.684902026	8.093633347	5.25178575	15.24506922	10.444978	15.17946284	15.32362011	12.24180263	15.24543709	3.832142186	5.400510554	8.384563377
ACETIC ACID	177.9322891	191.9792453	264.4409766	116.1258286	147.5231537	150.2370198	71.37946709	155.8702225	126.5503101	128.6646369	154.1427294	270.0898231	203.9769987	103.6850849	150.9190642	150.0703722	172.481167	211.6133321	180.4650813	286.7994087	335.8978138	206.0276394	172.5134581	173.5795451	160.5979074	207.0516275	145.086147	264.85096	279.844235	302.2752123	301.580251	268.9112359	362.6800722	127.6190479	89.94958208	231.0220242
BUTYRIC ACID	4.936472965	5.461949054	5.378846764	3.27265639	6.693285899	6.280350863	3.52689921	7.376379868	8.070454282	3.204406993	7.225977156	5.044628701	6.460205541	2.958998606	6.524558901	5.989369631	4.41382927	8.156647509	6.394012697	11.80395236	17.67590449	4.473255063	5.04268686	6.8090649	9.958230291	7.836214183	6.12899432	9.377111429	11.51271683	15.8898689	16.94950627	14.24845137	16.13281423	3.631686341	5.214119081	12.00199577
HEXANOIC ACID	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.159901947	0	0	0	0	0	0	0	0	0	5.072759522	2.076515345	1.33027762	0	0	0	0
MS_METABOLITE_DATA_END
#METABOLITES
METABOLITES_START
metabolite_name	moverz_quant	ri	ri_type	pubchem_id	inchi_key	kegg_id	other_id	other_id_type
PROPIONIC ACID				1032				
ACETIC ACID				176				
BUTYRIC ACID				264				
HEXANOIC ACID				8892				
METABOLITES_END
