#METABOLOMICS WORKBENCH TEXT OUTPUT STUDY_ID:	ANALYSIS_ID:	
VERSION             	1
CREATED_ON          	2017-08-01
#PROJECT
PR:PROJECT_TITLE    	Metabolic regulation by PARP-1 in myofibroblast differentiation and fibrosis
PR:PROJECT_TYPE     	MS analysis
PR:PROJECT_SUMMARY  	Analysis of wild type lung tissue after saline or bleomycin treatment
PR:INSTITUTE        	University of Michigan
PR:DEPARTMENT       	Deaprtment of Pathology
PR:LABORATORY       	Sem H. Phan
PR:LAST_NAME        	Hu
PR:FIRST_NAME       	Biao
PR:ADDRESS          	Ann Arbor, MI
PR:EMAIL            	biaohu@med.umich.edu
PR:PHONE            	734-7635731
PR:FUNDING_SOURCE   	
PR:PROJECT_COMMENTS 	
PR:PUBLICATIONS     	
#STUDY
ST:STUDY_TITLE      	Metabolic analysis of Parp1 ko/wt Saline & Bleo Mouse Lung Fiboblasts and Human IPF & Normal Lung Fiboblasts 3
ST:STUDY_TYPE       	MS analysis
ST:STUDY_SUMMARY    	Glycolysis/TCA/Nucleotide analysis (especially interested in alpha-ketoglutarate) and NAD+ and related metabolite analysis for all samples
ST:INSTITUTE        	University of Michigan
ST:DEPARTMENT       	Biomedical Research Core Facilities
ST:LABORATORY       	Metabolomics core
ST:LAST_NAME        	Kachman
ST:FIRST_NAME       	Maureen
ST:ADDRESS          	6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
ST:EMAIL            	mkachman@med.umich.edu
ST:PHONE            	(734) 232-8175
ST:SUBMIT_DATE      	08/08/2014 02:01:21 PM
ST:NUM_GROUPS       	6
ST:TOTAL_SUBJECTS   	16
ST:STUDY_COMMENTS   	
#SUBJECT
SU:SUBJECT_TYPE                   	HUMAN
SU:SUBJECT_SPECIES                	Homo sapiens
SU:TAXONOMY_ID                    	9606
#SUBJECT_SAMPLE_FACTORS:          	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Additional sample data
SUBJECT_SAMPLE_FACTORS            	SU0004492	S00015469	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:N | saline/HLF:Y | wt B6:Y	
SUBJECT_SAMPLE_FACTORS            	SU0004493	S00015470	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:N | saline/HLF:Y | wt B6:Y	
SUBJECT_SAMPLE_FACTORS            	SU0004494	S00015471	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	
SUBJECT_SAMPLE_FACTORS            	SU0004495	S00015472	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	
SUBJECT_SAMPLE_FACTORS            	SU0004496	S00015473	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	
SUBJECT_SAMPLE_FACTORS            	SU0004497	S00015474	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	
SUBJECT_SAMPLE_FACTORS            	SU0004498	S00015475	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004499	S00015476	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004500	S00015477	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004501	S00015478	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004502	S00015479	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004503	S00015480	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004504	S00015481	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004505	S00015482	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004506	S00015483	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	
SUBJECT_SAMPLE_FACTORS            	SU0004507	S00015484	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	
#COLLECTION
CO:COLLECTION_SUMMARY             	-
#TREATMENT
TR:TREATMENT_SUMMARY              	-
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY             	-
SP:SAMPLEPREP_PROTOCOL_FILENAME   	A010 - Ceramides.pdf
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE            	Phenyl
CH:INSTRUMENT_NAME                	6490A QQQ LC/MS (Agilent)
CH:COLUMN_NAME                    	Pinnacle DB Biphenyl, 140A, 1.9mkm, 2.1mm X 50mm (Restek)
CH:METHODS_FILENAME               	QM033_2mmC18_Ceramide_MRM
#ANALYSIS
AN:ANALYSIS_TYPE                  	MRM
AN:INSTRUMENT_NAME                	6490A QQQ LC/MS (Agilent)
AN:ANALYSIS_PROTOCOL_FILE         	A010 - Ceramides.pdf
AN:ACQUISITION_PARAMETERS_FILE    	QM033_2mmC18_Ceramide_MRM
AN:PROCESSING_PARAMETERS_FILE     	-
#MS
MS:INSTRUMENT_TYPE                	QQQ
MS:MS_TYPE                        	ESI
MS:ION_MODE                       	POSITIVE
#MS_METABOLITE_DATA
MS_METABOLITE_DATA:UNITS	uM
MS_METABOLITE_DATA_START
Sample	S00015469	S00015470	S00015471	S00015472	S00015473	S00015474	S00015475	S00015476	S00015477	S00015478	S00015479	S00015480	S00015481	S00015482	S00015483	S00015484
Factors	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:N | saline/HLF:Y | wt B6:Y	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:N | saline/HLF:Y | wt B6:Y	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	Sample type:Tissues | Species:Mus musculus | bleomycin/IPF:Y | saline/HLF:N | wt B6:Y	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:N | saline/HLF:Y | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N	Sample type:Cells | Species:Homo sapiens | bleomycin/IPF:Y | saline/HLF:N | wt B6:N
C14 CER	13.18467456	11.3554499	16.71693126	17.5211094	14.99545025	16.52230241	4.341071808	4.523389516	3.910946385	3.72642603	3.686349582	2.567389296	2.579638735	3.295066866	3.169451064	2.82618964
N-(OLEOYL)-CERAMIDE	60.09308441	56.13348308	79.88984208	80.01543077	47.18888104	52.99986529	8.563245435	8.477443107	8.287113223	8.085358	8.100988521	7.322380042	7.567238928	7.561450824	7.569146526	7.309183262
N-PALMITOYLSPHINGOSINE	3589.962036	3102.803433	5239.218675	4368.8023	2968.105857	3291.572604	111.2430941	134.7340545	102.0941312	106.2026024	96.60617206	129.5525361	121.4395177	158.712242	153.9979781	138.7477852
N-STEAROYLSPHINGOSINE	541.0739629	408.8605058	688.209609	530.1515236	523.4719251	650.0436023	6.172734398	8.660236358	6.583264455	6.456199665	5.610454373	3.182783523	2.541264579	3.43938129	3.66297448	3.129887079
N-ICOSANOYLSPHINGOSINE	842.957053	842.3758328	982.6844946	833.68724	916.7110151	1578.309097	7.319720471	8.581557899	7.358170248	6.659164131	6.719343166	6.324317278	5.929982975	6.889094001	7.170088474	6.964446368
C24 CER	1279.74824	1379.284799	542.9248375	1478.376646	1147.90664	1505.891429	130.060554	159.1229516	308.3833215	112.5124306	292.9832778	32.53552938	30.83932337	37.78045285	41.90340042	35.88320168
MS_METABOLITE_DATA_END
#METABOLITES
METABOLITES_START
metabolite_name	moverz_quant	ri	ri_type	pubchem_id	inchi_key	kegg_id	other_id	other_id_type
C14 CER				5282310				
N-(OLEOYL)-CERAMIDE				5283563				
N-PALMITOYLSPHINGOSINE				5283564				
N-STEAROYLSPHINGOSINE				5283565				
N-ICOSANOYLSPHINGOSINE				5283566				
C24 CER				5283571				
METABOLITES_END
